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Magda Bienko

Department of Microbiology

28H-index
93Paper Count
5.8KCitation Count
Published Papers 34
Publication Date
GPSeq maps the radial organization of eukaryotic genomes along the nuclear periphery–center axis
err2026-01-19
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PREAI
errWing Hin Yip; Kaja Harton; Ilaria Castiglioni; Britta A. M. Bouwman; Carlos Jiménez; Emily Georgiades; Luuk Harbers; Wenjing Kang; Erik Wernersson; Nicola Crosetto; Magda Bienko
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Translocations can drive expression changes of multiple genes in regulons covering entire chromosome arms
err2025-08-22
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errOAAI
errAnna Oncins; Roser Zaurin; Houyem Toukabri; Kimberly Quililan; José R Hernández Mora; Magdalena A Karpinska; Erik Wernersson; Alastair Smith; Agostina Bianchi; Leone Albinati; Luca Cozzuto; Andrea Rivero; Chloe Gulliver; Jessica Velten; Johanna Denkena; François Serra; Raúl Gómez; Cristina López; Sílvia Beà; Jonas Paulsen; Nadia Halidi; Alfonso Valencia; Magda Bienko; A Marieke Oudelaar; Renée Beekman
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Emerging methods and applications in 3D genomics
err2024-10-01
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errOAAI
errPedrotti, Simona; Castiglioni, Ilaria; Perez-Estrada, Cynthia; Zhao, Linxuan; Chen, Jinxin Phaedo; Crosetto, Nicola; Bienko, Magda
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Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images
err2024-06-06
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errOAAI
errWernersson, Erik; Gelali, Eleni; Girelli, Gabriele; Wang, Su; Castillo, David; Langseth, Christoffer Mattsson; Verron, Quentin; Nguyen, Huy Q.; Chattoraj, Shyamtanu; Martinez Casals, Anna; Blom, Hans; Lundberg, Emma; Nilsson, Mats; Marti-Renom, Marc A.; Wu, Chao-ting; Crosetto, Nicola; Bienko, Magda
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High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue
err2024-04-24
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errOAAI
errZhang, Ning; Harbers, Luuk; Simonetti, Michele; Diekmann, Constantin; Verron, Quentin; Berrino, Enrico; Bellomo, Sara E.; Longo, Gabriel M. C.; Ratz, Michael; Schultz, Niklas; Tarish, Firas; Su, Peng; Han, Bo; Wang, Wanzhong; Onorato, Sofia; Grassini, Dora; Ballarino, Roberto; Giordano, Silvia; Yang, Qifeng; Sapino, Anna; Frisen, Jonas; Alkass, Kanar; Druid, Henrik; Roukos, Vassilis; Helleday, Thomas; Marchio, Caterina; Bienko, Magda; Crosetto, Nicola
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scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells (vol 15, 1768, 2024)
err2024-04-22
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errOAAI
errChen, Jinxin Phaedo; Diekmann, Constantin; Wu, Honggui; Chen, Chong; Della Chiara, Giulia; Berrino, Enrico; Georgiadis, Konstantinos L.; Bouwman, Britta A. M.; Virdi, Mohit; Harbers, Luuk; Bellomo, Sara Erika; Marchio, Caterina; Bienko, Magda; Crosetto, Nicola
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scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells
err2024-02-27
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errOAAI
errChen, Jinxin Phaedo; Diekmann, Constantin; Wu, Honggui; Chen, Chong; Della Chiara, Giulia; Berrino, Enrico; Georgiadis, Konstantinos L.; Bouwman, Britta A. M.; Virdi, Mohit; Harbers, Luuk; Bellomo, Sara Erika; Marchio, Caterina; Bienko, Magda; Crosetto, Nicola
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Compartmentalizing damaged DNA A double-edged sword
err2024-01-01
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errOAAI
errGeorgiades, Emily; Crosetto, Nicola; Bienko, Magda
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Separation of transcriptional repressor and activator functions in Drosophila HDAC3
err2023-08-02
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errOAAI
errTang, Min; Regadas, Isabel; Belikov, Sergey; Shilkova, Olga; Xu, Lei; Wernersson, Erik; Liu, Xuewen; Wu, Hongmei; Bienko, Magda; Mannervik, Mattias
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A GC-centered view of 3D genome organization
err2023-02-01
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errOAAI
errBouwman, Britta A. M.; Crosetto, Nicola; Bienko, Magda
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Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases
err2022-12-01
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errOAAI
errNicos, Marcin; Harbers, Luuk; Patrucco, Enrico; Kramer-Drauberg, Maximilian; Zhang, Xiaolu; Voena, Claudia; Kowalczyk, Anna; Bozyk, Aleksandra; Peksa, Rafal; Jarosz, Bozena; Szumilo, Justyna; Simonetti, Michele; Zuk, Monika; Wasag, Bartosz; Reszka, Katarzyna; Duchnowska, Renata; Milanowski, Janusz; Chiarle, Roberto; Bienko, Magda; Krawczyk, Pawel; Jassem, Jacek; Ambrogio, Chiara; Crosetto, Nicola
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FRET-FISH probes chromatin compaction at individual genomic loci in single cells
err2022-11-05
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errOAAI
errMota, Ana; Berezicki, Szymon; Wernersson, Erik; Harbers, Luuk; Li-Wang, Xiaoze; Gradin, Katarina; Peuckert, Christiane; Crosetto, Nicola; Bienko, Magda
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The era of 3D and spatial genomics
err2022-10-01
err35
errOAAI
errBouwman, Britta A. M.; Crosetto, Nicola; Bienko, Magda
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RNA gradients: Shapers of 3D genome architecture
err2022-02-01
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errOAAI
errBouwman, Britta A. M.; Crosetto, Nicola; Bienko, Magda
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piRNAs initiate transcriptional silencing of spermatogenic genes during C. elegans germline development
err2022-01-01
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errOAAI
errCornes, Eric; Bourdon, Loan; Singh, Meetali; Mueller, Florian; Quarato, Piergiuseppe; Wernersson, Erik; Bienko, Magda; Li, Blaise; Cecere, Germano
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Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas
err2021-07-28
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errOAAI
errHarbers, Luuk; Agostini, Federico; Nicos, Marcin; Poddighe, Dimitri; Bienko, Magda; Crosetto, Nicola
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COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance
err2021-06-23
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errOAAI
errSimonetti, Michele; Zhang, Ning; Harbers, Luuk; Milia, Maria Grazia; Brossa, Silvia; Nguyen, Thi Thu Huong; Cerutti, Francesco; Berrino, Enrico; Sapino, Anna; Bienko, Magda; Sottile, Antonino; Ghisetti, Valeria; Crosetto, Nicola
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Genome-wide detection of DNA double-strand breaks by in-suspension BLISS
err2020-11-02
err29
PREAI
errBouwman, Britta A. M.; Agostini, Federico; Garnerone, Silvano; Petrosino, Giuseppe; Gothe, Henrike J.; Sayols, Sergi; Moor, Andreas E.; Itzkovitz, Shalev; Bienko, Magda; Roukos, Vassilis; Crosetto, Nicola
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