logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
J

Justin Wagner

National Institute of Standards and Technology

24H-index
68Paper Count
7.8KCitation Count
Published Papers 18
Publication Date
logo
Correction: Development and extensive sequencing of a broadly-consented Genome in a Bottle matched tumor-normal pair
errScientific Data
IF6.9
err2025-08-08
err0
errOAAI
errJennifer H. McDaniel; Vaidehi Patel; Nathan D. Olson; Hua-Jun He; Zhiyong He; Kenneth D. Cole; Alexander A. Gooden; Anthony Schmitt; Kristin Sikkink; Fritz J. Sedlazeck; Harsha Doddapaneni; Shalini N. Jhangiani; Donna M. Muzny; Marie-Claude Gingras; Heer Mehta; Sairam Behera; Luis F. Paulin; Alex R. Hastie; Hung-Chun Yu; Victor Weigman; Alison Rojas; Katie Kennedy; Jamie Remington; Isai Salas-González; Mitch Sudkamp; Kelly Wiseman; Bryan R. Lajoie; Shawn Levy; Miten Jain; Stuart Akeson; Giuseppe Narzisi; Zoe Steinsnyder; Catherine Reeves; Jennifer Shelton; Sarah B. Kingan; Christine Lambert; Primo Baybayan; Aaron M. Wenger; Ian J. McLaughlin; Aaron Adamson; Christopher Kingsley; Melanie Wescott; Young Kim; Benedict Paten; Jimin Park; Ivo Violich; Karen H. Miga; Joshua Gardner; Brandy McNulty; Gail L. Rosen; Rajiv McCoy; Francesco Brundu; Erfan Sayyari; Konrad Scheffler; Sean Truong; Severine Catreux; Lesley Chapman Hannah; Doron Lipson; Hila Benjamin; Nika Iremadze; Ilya Soifer; Gat Krieger; Stephen Eacker; Mary Wood; Erin Cross; Greg Husar; Stephen Gross; Michael Vernich; Mikhail Kolmogorov; Tanveer Ahmad; Ayse G. Keskus; Asher Bryant; Francoise Thibaud-Nissen; Jonathan Trow; Jacqueline Proszynski; Jeremy Wain Hirschberg; Krista Ryon; Christopher E. Mason; Mital S. Bhakta; J. Zachary Sanborn; Elizabeth M. Munding; Justin Wagner; Chunlin Xiao; Andrew S. Liss; Justin M. Zook
errShare
errSave
Small variant benchmark from a complete assembly of X and Y chromosomes
errNATURE COMMUNICATIONS
IF15.7
err2025-01-08
err0
errOAAI
errWagner, Justin; Olson, Nathan D.; Mcdaniel, Jennifer; Harris, Lindsay; Pinto, Brendan J.; Rubio-Rodriguez, Luis A.; Lorenzo-Salazar, Jose M.; Flores, Carlos; Sahraeian, Sayed Mohammad Ebrahim; Narzisi, Giuseppe; Byrska-Bishop, Marta; Evani, Uday S.; Xiao, Chunlin; Lake, Juniper A.; Fontana, Peter; Greenberg, Craig; Freed, Donald; Mootor, Mohammed Faizal Eeman; Boutros, Paul C.; Murray, Lisa; Shafin, Kishwar; Carroll, Andrew; Sedlazeck, Fritz J.; Wilson, Melissa; Zook, Justin M.
errShare
errSave
The GIAB genomic stratifications resource for human reference genomes
errNATURE COMMUNICATIONS
IF15.7
err2024-10-19
err0
errOAAI
errDwarshuis, Nathan; Kalra, Divya; McDaniel, Jennifer; Sanio, Philippe; Jerez, Pilar Alvarez; Jadhav, Bharati; Huang, Wenyu (Eddy); Mondal, Rajarshi; Busby, Ben; Olson, Nathan D.; Sedlazeck, Fritz J.; Wagner, Justin; Majidian, Sina; Zook, Justin M.
errShare
errSave
StratoMod: predicting sequencing and variant calling errors with interpretable machine learning
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-10-13
err1
errOAAI
errDwarshuis, Nathan; Tonner, Peter; Olson, Nathan D.; Sedlazeck, Fritz J.; Wagner, Justin; Zook, Justin M.
errShare
errSave
Analysis and benchmarking of small and large genomic variants across tandem repeats
errNATURE BIOTECHNOLOGY
IF41.7
err2024-04-26
err5
PREAI
errEnglish, Adam C.; Dolzhenko, Egor; Jam, Helyaneh Ziaei; Mckenzie, Sean K.; Olson, Nathan D.; De Coster, Wouter; Park, Jonghun; Gu, Bida; Wagner, Justin; Eberle, Michael A.; Gymrek, Melissa; Chaisson, Mark J. P.; Zook, Justin M.; Sedlazeck, Fritz J.
errShare
errSave
Continued analysis of extensive data towards Genome in a Bottle benchmarks for a new tumor normal pair
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errWagner, Justin; McDaniel, Jennifer; Rosen, Gail L.; Olson, Nathan D.; Patel, Vaidehi; Xiao, Chunlin; Liss, Andrew; Zook, Justin
errShare
errSave
Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes
errNATURE METHODS
IF32.1
err2023-06-26
err11
errOAAI
errChin, Chen-Shan; Behera, Sairam; Khalak, Asif; Sedlazeck, Fritz J.; Sudmant, Peter H.; Wagner, Justin; Zook, Justin M.
errShare
errSave
Pangenome graph construction from genome alignments with Minigraph-Cactus
errNATURE BIOTECHNOLOGY
IF41.7
err2023-05-10
err49
errOAAI
errHickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.
errShare
errSave
Variant calling and benchmarking in an era of complete human genome sequences
errNATURE REVIEWS GENETICS
IF52
err2023-04-14
err34
PREAI
errOlson, Nathan D.; Wagner, Justin; Dwarshuis, Nathan; Miga, Karen H.; Sedlazeck, Fritz J.; Salit, Marc; Zook, Justin M.
errShare
errSave
Sequencing a new broadly-consented tumor/normal cell line for a Genome in a Bottle Benchmark
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errRosen, Gail; Wagner, Justin; Liss, Andrew; Zook, Justin
errShare
errSave
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
errCELL GENOMICS
IF9
err2022-05-01
err57
errOAAI
errOlson, Nathan D.; Wagner, Justin; McDaniel, Jennifer; Stephens, Sarah H.; Westreich, Samuel T.; Prasanna, Anish G.; Johanson, Elaine; Boja, Emily; Maier, Ezekiel J.; Serang, Omar; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Kyriakidis, Konstantinos; Malousi, Andigoni; Shafin, Kishwar; Pesout, Trevor; Jain, Miten; Paten, Benedict; Chang, Pi-Chuan; Kolesnikov, Alexey; Nattestad, Maria; Baid, Gunjan; Goel, Sidharth; Yang, Howard; Carroll, Andrew; Eveleigh, Robert; Bourgey, Mathieu; Bourque, Guillaume; Li, Gen; Ma, ChouXian; Tang, LinQi; Du, YuanPing; Zhang, ShaoWei; Morata, Jordi; Tonda, Raul; Parra, Genis; Trotta, Jean-Remi; Brueffer, Christian; Demirkaya-Budak, Sinem; Kabakci-Zorlu, Duygu; Turgut, Deniz; Kalay, Ozem; Narci, Kubra; Arslan, Elif; Brown, Richard; Johnson, Ivan J.; Dolgoborodov, Alexey; Semenyuk, Vladimir; Jain, Amit; Tetikol, H. Serhat; Jain, Varun; Ruehle, Mike; Lajoie, Bryan; Roddey, Cooper; Catreux, Severine; Mehio, Rami; Ahsan, Mian Umair; Liu, Qian; Wang, Kai; Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Mohiyuddin, Marghoob; Hung, Calvin; Jain, Chirag; Feng, Hanying; Li, Zhipan; Chen, Luoqi; Sedlazeck, Fritz J.; Zook, Justin M.
errShare
errSave
Benchmarking challenging small variants with linked and long reads
errCELL GENOMICS
IF9
err2022-05-01
err51
errOAAI
errWagner, Justin; Olson, Nathan D.; Harris, Lindsay; Khan, Ziad; Farek, Jesse; Mahmoud, Medhat; Stankovic, Ana; Kovacevic, Vladimir; Yoo, Byunggil; Miller, Neil; Rosenfeld, Jeffrey A.; Ni, Bohan; Zarate, Samantha; Kirsche, Melanie; Aganezov, Sergey; Schatz, Michael C.; Narzisi, Giuseppe; Byrska-Bishop, Marta; Clarke, Wayne; Evani, Uday S.; Markello, Charles; Shafin, Kishwar; Zhou, Xin; Sidow, Arend; Bansal, Vikas; Ebert, Peter; Marschall, Tobias; Lansdorp, Peter; Hanlon, Vincent; Mattsson, Carl-Adam; Barrio, Alvaro Martinez; Fiddes, Ian T.; Xiao, Chunlin; Fungtammasan, Arkarachai; Chin, Chen-Shan; Wenger, Aaron M.; Rowell, William J.; Sedlazeck, Fritz J.; Carroll, Andrew; Salit, Marc; Zook, Justin M.
errShare
errSave
Curated variation benchmarks for challenging medically relevant autosomal genes
errNATURE BIOTECHNOLOGY
IF41.7
err2022-02-07
err76
errOAAI
errWagner, Justin; Olson, Nathan D.; Harris, Lindsay; McDaniel, Jennifer; Cheng, Haoyu; Fungtammasan, Arkarachai; Hwang, Yih-Chii; Gupta, Richa; Wenger, Aaron M.; Rowell, William J.; Khan, Ziad M.; Farek, Jesse; Zhu, Yiming; Pisupati, Aishwarya; Mahmoud, Medhat; Xiao, Chunlin; Yoo, Byunggil; Sahraeian, Sayed Mohammad Ebrahim; Miller, Danny E.; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Narzisi, Giuseppe; Evani, Uday Shanker; Clarke, Wayne E.; Lee, Joyce; Mason, Christopher E.; Lincoln, Stephen E.; Miga, Karen H.; Ebbert, Mark T. W.; Shumate, Alaina; Li, Heng; Chin, Chen-Shan; Zook, Justin M.; Sedlazeck, Fritz J.
errShare
errSave
A diploid assembly-based benchmark for variants in the major histocompatibility complex
errNATURE COMMUNICATIONS
IF15.7
err2020-09-22
err40
errOAAI
errChin, Chen-Shan; Wagner, Justin; Zeng, Qiandong; Garrison, Erik; Garg, Shilpa; Fungtammasan, Arkarachai; Rautiainen, Mikko; Aganezov, Sergey; Kirsche, Melanie; Zarate, Samantha; Schatz, Michael C.; Xiao, Chunlin; Rowell, William J.; Markello, Charles; Farek, Jesse; Sedlazeck, Fritz J.; Bansal, Vikas; Yoo, Byunggil; Miller, Neil; Zhou, Xin; Carroll, Andrew; Barrio, Alvaro Martinez; Salit, Marc; Marschall, Tobias; Dilthey, Alexander T.; Zook, Justin M.
errShare
errSave
Assembly and annotation of an Ashkenazi human reference genome
errGENOME BIOLOGY
IF9.4
err2020-06-02
err36
errOAAI
errShumate, Alaina; Zimin, Aleksey, V; Sherman, Rachel M.; Puiu, Daniela; Wagner, Justin M.; Olson, Nathan D.; Pertea, Mihaela; Salit, Marc L.; Zook, Justin M.; Salzberg, Steven L.
errShare
errSave
An open resource for accurately benchmarking small variant and reference calls
errNATURE BIOTECHNOLOGY
IF41.7
err2019-04-01
err207
errOAAI
errZook, Justin M.; McDaniel, Jennifer; Olson, Nathan D.; Wagner, Justin; Parikh, Hemang; Heaton, Haynes; Irvine, Sean A.; Trigg, Len; Truty, Rebecca; McLean, Cory, V; De La Vega, Francisco M.; Xiao, Chunlin; Sherry, Stephen; Salit, Marc
errShare
errSave
Traumatic Brain Injury in Mice Induces Acute Bacterial Dysbiosis Within the Fecal Microbiome
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2018-11-27
err118
errOAAI
errTreangen, Todd J.; Wagner, Justin; Burns, Mark P.; Villapol, Sonia
errShare
errSave
Metaviz: interactive statistical and visual analysis of metagenomic data
errNUCLEIC ACIDS RESEARCH
IF13.1
err2018-02-26
err21
errOAAI
errWagner, Justin; Chelaru, Florin; Kancherla, Jayaram; Paulson, Joseph N.; Zhang, Alexander; Felix, Victor; Mahurkar, Anup; Elmqvist, Niklas; Bravo, Hector Corrada
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
E
Evan E. Eichler
H-index: 191 · Papers: 864
D
David Haussler
H-index: 175 · Papers: 720
P
Paul Flicek
H-index: 167 · Papers: 522
S
Steven L. Salzberg
H-index: 160 · Papers: 600
R
Robert S. Fulton
H-index: 154 · Papers: 584
View more