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Christoph Kuppe

University Hospital RWTH Aachen

36H-index
154Paper Count
5.4KCitation Count
Published Papers 56
Publication Date
Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering
err2026-08-24
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errOAAI
errJieran Sun; Kirti Biharie; Peiying Cai; Niklas Müller-Bötticher; Paul Kiessling; Meghan A. Turner; Søren Helweg Dam; Florian Heyl; Sarusan Kathirchelvan; Martin Emons; Samuel Gunz; Sven Twardziok; Amin El-Heliebi; Martin Zacharias; Roland Eils; Marcel Reinders; Raphael Gottardo; Christoph Kuppe; Brian Long; Ahmed Mahfouz; Mark D. Robinson; Naveed Ishaque
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Spatial Multiomics Reveal Insights Into ADC Efficacy
err2026-05-04
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errOAAI
errOsman Goni; Niklas Klümper; Maria del Mar Muñiz Moreno; Markus Eckstein; Christoph Kuppe
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Identifying 3D signal overlaps in spatial transcriptomics data with ovrlpy
err2026-02-10
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PREAI
errSebastian Tiesmeyer; Niklas Müller-Bötticher; Alexander Malt; Leyao Ma; Sergio Marco-Salas; Paul Kiessling; Paul Horn; Adrien Guillot; Louis B. Kuemmerle; Frank Tacke; Fabian J. Theis; Christoph Kuppe; Mats Nilsson; Roland Eils; Brian Long; Naveed Ishaque
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Targeting modulated vascular smooth muscle cells in atherosclerosis via FAP-directed immunotherapy
errScience
IF45.8
err2026-01-29
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PREAI
errJunedh M. Amrute; In-Hyuk Jung; Tracy Yamawaki; Wen-Ling Lin; Andrea Bredemeyer; Johanna Diekmann; Sikander Hayat; Xianglong Zhang; Devin L. Wakefield; Xin Luo; Sidrah Maryam; Gyu Seong Heo; Steven Yang; Chang Jie Mick Lee; Chen Wang; Caroline Chou; Christoph Kuppe; Kevin D. Cook; Atilla Kovacs; Vishnu Chintalgattu; Danielle Pruitt; Jose Barreda; Nathan O. Stitziel; Paul Cheng; Yongjian Liu; Rafael Kramann; Daniel Kreisel; Roger S.-Y. Foo; Ingrid C. Rulifson; Scott Martin; David Grunert; Melissa Thomas; Jixin Cui; Thomas Quertermous; Frank M. Bengel; Simon Jackson; Chi-Ming Li; Brandon Ason; Kory J. Lavine
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Cell–cell crosstalk in kidney health and disease
err2025-11-25
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PREAI
errEmilia Marie Scheidereit; Lampros Mavrommatis; Christoph Kuppe
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Dissecting Normal and Abnormal Human Kidney Development Using Multiomics
err2025-11-01
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PREAI
errKlomp, Luna S.; Mavrommatis, Lampros; Arcolino, Fanny O.; Lantermans, Hildo C.; Levtchenko, Elena; Kuppe, Christoph; Westland, Rik
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PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories
err2025-10-23
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errOAAI
errMingbo Cheng; Jitske Jansen; Katharina C. Reimer; Vincent P. Grande; James S. Nagai; Zhijian Li; Paul Kießling; Martin Grasshoff; Christoph Kuppe; Michael T. Schaub; Rafael Kramann; Ivan G. Costa
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PILOT-GM-VAE: patient-level analysis of single-cell disease atlas with optimal transport of Gaussian mixture variational autoencoders
err2025-09-01
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errOAAI
errJoodaki, Mehdi; Shaigan, Mina; Samiei, Samaneh; Nagai, James; Maie, Tiago; Kuppe, Christoph; Costa, Ivan G.
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Pathology-oriented multiplexing enables integrative disease mapping
errNature
IF48.5
err2025-07-18
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errOAAI
errMalte Kuehl; Yusuke Okabayashi; Milagros N. Wong; Lukas Gernhold; Gabriele Gut; Nico Kaiser; Maria Schwerk; Stefanie K. Gräfe; Frank Y. Ma; Jovan Tanevski; Philipp S. L. Schäfer; Sam Mezher; Jacobo Sarabia del Castillo; Thiago Goldbeck-Strieder; Olga Zolotareva; Michael Hartung; Fernando M. Delgado Chaves; Lukas Klinkert; Ann-Christin Gnirck; Marc Spehr; David Fleck; Mehdi Joodaki; Victor Parra; Mina Shaigan; Martin Diebold; Marco Prinz; Jennifer Kranz; Johan M. Kux; Fabian Braun; Oliver Kretz; Hui Wu; Florian Grahammer; Sven Heins; Marina Zimmermann; Fabian Haas; Dominik Kylies; Nicola Wanner; Jan Czogalla; Bernhard Dumoulin; Nikolay Zolotarev; Maja Lindenmeyer; Pall Karlson; Jens R. Nyengaard; Marcial Sebode; Sören Weidemann; Thorsten Wiech; Hermann-Josef Groene; Nicola M. Tomas; Catherine Meyer-Schwesinger; Christoph Kuppe; Rafael Kramann; Alexandre Karras; Patrick Bruneval; Pierre-Louis Tharaux; Diego Pastene; Benito Yard; Jennifer A. Schaub; Phillip J. McCown; Laura Pyle; Ye Ji Choi; Takashi Yokoo; Jan Baumbach; Pablo J. Sáez; Ivan Costa; Jan-Eric Turner; Jeffrey B. Hodgin; Julio Saez-Rodriguez; Tobias B. Huber; Petter Bjornstad; Matthias Kretzler; Olivia Lenoir; David J. Nikolic-Paterson; Lucas Pelkmans; Stefan Bonn; Victor G. Puelles
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Vitamin K preserves gamma-glutamyl carboxylase activity against carbamylations in uremia: Implications for vascular calcification and adjunct therapies
err2025-04-09
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errOAAI
errKaesler, N; Kaushik, S; Frisch, J; Ziegler, S; Grommes, J; Gombert, A; Roma, LP; Kuppe, C; Jankowski, J; Floege, J; de la Puente-Secades, S; Kramann, R; Jankowski, V
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High-Resolution Spatial Profiling Unveils Cellular Heterogeneity in Murine Atherosclerosis
err2025-04-08
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PREAI
errWrobel, Jan; Jung, Samuel; Kiessling, Paul; Scheidereit, Emilia; Kuppe, Christoph; Bazioti, Venetia; Atzler, Dorothee; Winkels, Holger
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Generation of a conditional cellular senescence model using proximal tubule cells and fibroblasts from human kidneys
err2024-08-14
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errOAAI
errShao, Xiaohang; Xu, Huaming; Kim, Hyojin; Ljaz, Sadaf; Beier, Fabian; Jankowski, Vera; Lellig, Michaela; Vankann, Lucia; Werner, Jan Niklas; Chen, Lu; Ziegler, Susanne; Kuppe, Christoph; Zenke, Martin; Schneider, Rebekka K.; Hayat, Sikander; Saritas, Turgay; Kramann, Rafael
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High serum sodium predicts immunotherapy response in metastatic renal cell and urothelial carcinoma
err2024-06-01
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errOAAI
errKluemper, Niklas; Cox, Alexander; Eckstein, Markus; Kuppe, Christoph; Ritter, Manuel; Brossart, Peter; Luetkens, Julian; Holzel, Michael; Stein, Johannes; Saal, Jonas
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Harnessing Artificial Intelligence for Enhanced Renal Analysis: Automated Detection of Hydronephrosis and Precise Kidney Segmentation
err2024-04-01
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errOAAI
errAlexa, Radu; Kranz, Jennifer; Kramann, Rafael; Kuppe, Christoph; Sanyal, Ritabrata; Hayat, Sikander; Murillo, Luis Felipe Casas; Hajili, Turkan; Hoffmann, Marco; Saar, Matthias
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A small-molecule TNIK inhibitor targets fibrosis in preclinical and clinical models
err2024-03-08
err39
errOAAI
errRen, Feng; Aliper, Alex; Chen, Jian; Zhao, Heng; Rao, Sujata; Kuppe, Christoph; Ozerov, Ivan V.; Zhang, Man; Witte, Klaus; Kruse, Chris; Aladinskiy, Vladimir; Ivanenkov, Yan; Polykovskiy, Daniil; Fu, Yanyun; Babin, Eugene; Qiao, Junwen; Liang, Xing; Mou, Zhenzhen; Wang, Hui; Pun, Frank W.; Ayuso, Pedro Torres; Veviorskiy, Alexander; Song, Dandan; Liu, Sang; Zhang, Bei; Naumov, Vladimir; Ding, Xiaoqiang; Kukharenko, Andrey; Izumchenko, Evgeny; Zhavoronkov, Alex
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Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
err2023-12-19
err4
errOAAI
errJoodaki, Mehdi; Shaigan, Mina; Parra, Victor; Buelow, Roman D.; Kuppe, Christoph; Hoelscher, David L.; Cheng, Mingbo; Nagai, James S.; Goedertier, Michael; Bouteldja, Nassim; Tesar, Vladimir; Barratt, Jonathan; Roberts, Ian S. D.; Coppo, Rosanna; Kramann, Rafael; Boor, Peter; Costa, Ivan G.
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Author Correction: A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology (vol 14, 3092, 2023)
err2023-06-15
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errOAAI
errPetersen, Julian; Englmaier, Lukas; Artemov, Artem V.; Poverennaya, Irina; Mahmoud, Ruba; Bouderlique, Thibault; Tesarova, Marketa; Deviatiiarov, Ruslan; Szilvasy-Szabo, Anett; Akkuratov, Evgeny E.; Reguera, David Pajuelo; Zeberg, Hugo; Kaucka, Marketa; Kastriti, Maria Eleni; Krivanek, Jan; Radaszkiewicz, Tomasz; Gomoryova, Kristina; Knauth, Sarah; Potesil, David; Zdrahal, Zbynek; Ganji, Ranjani Sri; Grabowski, Anna; Buhl, Miriam E.; Zikmund, Tomas; Kavkova, Michaela; Axelson, Hakan; Lindgren, David; Kramann, Rafael; Kuppe, Christoph; Erdelyi, Ferenc; Mate, Zoltan; Szabo, Gabor; Koehne, Till; Harkany, Tibor; Fried, Kaj; Kaiser, Jozef; Boor, Peter; Fekete, Csaba; Rozman, Jan; Kasparek, Petr; Prochazka, Jan; Sedlacek, Radislav; Bryja, Vitezslav; Gusev, Oleg; Adameyko, Igor
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A previously uncharacterized Factor Associated with Metabolism and Energy (FAME/C14orf105/CCDC198/1700011H14Rik) is related to evolutionary adaptation, energy balance, and kidney physiology
err2023-05-29
err1
errOAAI
errPetersen, Julian; Englmaier, Lukas; Artemov, Artem V.; Poverennaya, Irina; Mahmoud, Ruba; Bouderlique, Thibault; Tesarova, Marketa; Deviatiiarov, Ruslan; Szilvasy-Szabo, Anett; Akkuratov, Evgeny E.; Pajuelo Reguera, David; Zeberg, Hugo; Kaucka, Marketa; Kastriti, Maria Eleni; Krivanek, Jan; Radaszkiewicz, Tomasz; Goemoeryova, Kristina; Knauth, Sarah; Potesil, David; Zdrahal, Zbynek; Ganji, Ranjani Sri; Grabowski, Anna; Buhl, Miriam E.; Zikmund, Tomas; Kavkova, Michaela; Axelson, Hakan; Lindgren, David; Kramann, Rafael; Kuppe, Christoph; Erdelyi, Ferenc; Mate, Zoltan; Szabo, Gabor; Koehne, Till; Harkany, Tibor; Fried, Kaj; Kaiser, Jozef; Boor, Peter; Fekete, Csaba; Rozman, Jan; Kasparek, Petr; Prochazka, Jan; Sedlacek, Radislav; Bryja, Vitezslav; Gusev, Oleg; Adameyko, Igor
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Expansion-enhanced super-resolution radial fluctuations enable nanoscale molecular profiling of pathology specimens
err2023-04-10
err13
errOAAI
errKylies, Dominik; Zimmermann, Marina; Haas, Fabian; Schwerk, Maria; Kuehl, Malte; Brehler, Michael; Czogalla, Jan; Hernandez, Lola C.; Konczalla, Leonie; Okabayashi, Yusuke; Menzel, Julia; Edenhofer, Ilka; Mezher, Sam; Aypek, Hande; Dumoulin, Bernhard; Wu, Hui; Hofmann, Smilla; Kretz, Oliver; Wanner, Nicola; Tomas, Nicola M.; Krasemann, Susanne; Glatzel, Markus; Kuppe, Christoph; Kramann, Rafael; Banjanin, Bella; Schneider, Rebekka K.; Urbschat, Christopher; Arck, Petra; Gagliani, Nicola; van Zandvoort, Marc; Wiech, Thorsten; Grahammer, Florian; Saez, Pablo J.; Wong, Milagros N.; Bonn, Stefan; Huber, Tobias B.; Puelles, Victor G.
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