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J

Jesse Gillis

university of toronto

46H-index
238Paper Count
1.0WCitation Count
Published Papers 49
Publication Date
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Cluster replicability in single-cell and single-nucleus atlases of the mouse brain
errNature Communications
IF15.7
err2026-06-23
err0
errOAAI
errLeon French; Hamsini Suresh; Jesse Gillis
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errSave
The plant hormone, 6-benzylaminopurine, ameliorates obesity in male and female mice while on a high-fat diet
errMolecular Metabolism
IF6.6
err2026-04-11
err0
errOAAI
errCalvin V. Lieu; Cindy X. Zhang; Neruja Loganathan; Leon French; Andre Krunic; Sarah B. Cash; Jin Shi; Juliette Lee; Kacey J. Prentice; Carolyn L. Cummins; Jesse Gillis; Denise D. Belsham
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errSave
NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development
errNature Neuroscience
IF20
err2026-03-25
err0
errOAAI
errShreyash Sonthalia; Brian Herb; Ricky S. Adkins; Joshua Orvis; Guangyan Li; Xiangyu Liao; Qingjie Yu; Xoel Mato Blanco; Alex Casella; Jinrui Liu; Genevieve Stein-O’Brien; Brian Caffo; Ronna Hertzano; Anup Mahurkar; Jin-Chong Xu; Jesse Gillis; Jonathan Werner; Shaojie Ma; Suel-Kee Kim; Nicola Micali; Nenad Sestan; Pasko Rakic; Gabriel Santpere; Seth A. Ament; Carlo Colantuoni
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errSave
The new frontier in understanding human and mammalian brain development
errNature
IF48.5
err2025-11-05
err0
PREAI
errTomasz J. Nowakowski; Patricia R. Nano; Katherine S. Matho; Xiaoyin Chen; Emily K. Corrigan; Wubin Ding; Yuan Gao; Matthew Heffel; Jaikishan Jayakumar; Harris S. Kaplan; Fae N. Kronman; Rothem Kovner; Camiel C. A. Mannens; Mengyi Song; Marilyn R. Steyert; Sridevi Venkatesan; Jenelle L. Wallace; Li Wang; Jonathan M. Werner; Di Zhang; Guohua Yuan; Guolong Zuo; Seth A. Ament; Carlo Colantuoni; Catherine Dulac; Rong Fan; Jesse Gillis; Arnold R. Kriegstein; Fenna M. Krienen; Yongsoo Kim; Sten Linnarsson; Partha P. Mitra; Alex A. Pollen; Nenad Sestan; Daniel J. Tward; Cindy T. J. van Velthoven; Zizhen Yao; Aparna Bhaduri; Hongkui Zeng
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Cross-expression meta-analysis of mouse brain slices reveals coordinated gene expression across spatially adjacent cells
errGenome Biology
IF9.4
err2025-10-30
err0
errOAAI
errAmeer Sarwar; Mara Rue; Leon French; Helen Cross; Sarah Choi; Xiaoyin Chen; Jesse Gillis
errShare
errSave
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
errNature
IF48.5
err2025-09-24
err0
PREAI
errArnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang
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errSave
Large-scale single-cell profiling of stem cells identifies redundant regulators of shoot development and yield trait variation
errDevelopmental Cell
IF8.7
err2025-08-26
err0
PREAI
errXiaosa Xu; Michael Passalacqua; Brian Rice; Edgar Demesa-Arevalo; Mikiko Kojima; Yumiko Takebayashi; Xingyao Yu; Benjamin Harris; Yuchen Liu; Andrea Gallavotti; Hitoshi Sakakibara; Jesse Gillis; David Jackson
errShare
errSave
Solanum pan-genetics reveals paralogues as contingencies in crop engineering
errNATURE
IF48.5
err2025-03-05
err1
errOAAI
errBenoit, Matthias; Jenike, Katharine M.; Satterlee, James W.; Ramakrishnan, Srividya; Gentile, Iacopo; Hendelman, Anat; Passalacqua, Michael J.; Suresh, Hamsini; Shohat, Hagai; Robitaille, Gina M.; Fitzgerald, Blaine; Alonge, Michael; Wang, Xingang; Santos, Ryan; He, Jia; Ou, Shujun; Golan, Hezi; Green, Yumi; Swartwood, Kerry; Karavolias, Nicholas G.; Sierra, Gina P.; Orejuela, Andres; Roda, Federico; Goodwin, Sara; Mccombie, W. Richard; Kizito, Elizabeth B.; Gagnon, Edeline; Knapp, Sandra; Saerkinen, Tiina E.; Frary, Amy; Gillis, Jesse; Van Eck, Joyce; Schatz, Michael C.; Lippman, Zachary B.
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errSave
Examining the NEUROG2 lineage and associated gene expression in human cortical organoids
errDEVELOPMENT
IF3.6
err2025-01-16
err0
errOAAI
errVasan, Lakshmy; Chinchalongporn, Vorapin; Saleh, Fermisk; Zinyk, Dawn; Ke, Cao; Suresh, Hamsini; Ghazale, Hussein; Belfiore, Lauren; Touahri, Yacine; Oproescu, Ana-Maria; Patel, Shruti; Rozak, Matthew; Amemiya, Yutaka; Han, Sisu; Moffat, Alexandra; Black, Sandra E.; Mclaurin, Joanne; Near, Jamie; Seth, Arun; Goubran, Maged; Reiner, Orly; Gillis, Jesse; Wang, Chao; Okawa, Satoshi; Schuurmans, Carol
errShare
errSave
Population variability in X-chromosome inactivation across 10 mammalian species
errNATURE COMMUNICATIONS
IF15.7
err2024-10-18
err0
errOAAI
errWerner, Jonathan M.; Hover, John; Gillis, Jesse
errShare
errSave
Coexpression enhances cross-species integration of single-cell RNA sequencing across diverse plant species
errNATURE PLANTS
IF13.6
err2024-06-27
err1
errOAAI
errPassalacqua, Michael John; Gillis, Jesse
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errSave
Defining Transcriptomic Heterogeneity between Left and Right Ventricle-Derived Cardiac Fibroblasts
errCELLS
IF5.2
err2024-02-10
err1
errOAAI
errDewar, Michael Bradley; Ehsan, Fahad; Izumi, Aliya; Zhang, Hangjun; Zhou, Yu-Qing; Shah, Haisam; Langburt, Dylan; Suresh, Hamsini; Wang, Tao; Hacker, Alison; Hinz, Boris; Gillis, Jesse; Husain, Mansoor; Heximer, Scott Patrick
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errSave
The transcriptional legacy of developmental stochasticity
errNATURE COMMUNICATIONS
IF15.7
err2023-11-09
err0
errOAAI
errBallouz, Sara; Kawaguchi, Risa Karakida; Pena, Maria T.; Fischer, Stephan; Crow, Megan; French, Leon; Knight, Frank M.; Adams, Linda B.; Gillis, Jesse
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errSave
Comparative single-cell transcriptomic analysis of primate brains highlights human-specific regulatory evolution
errNATURE ECOLOGY & EVOLUTION
IF14.5
err2023-09-04
err6
errOAAI
errSuresh, Hamsini; Crow, Megan; Jorstad, Nikolas; Hodge, Rebecca; Lein, Ed; Dobin, Alexander; Bakken, Trygve; Gillis, Jesse
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errSave
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2022-12-22
err1
errOAAI
errKawaguchi, Risa Karakida; Tang, Ziqi; Fischer, Stephan; Rajesh, Chandana; Tripathy, Rohit; Koo, Peter K.; Gillis, Jesse
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errSave
Prevalent and dynamic binding of the cell cycle checkpoint kinase Rad53 to gene promoters
errELIFE
IF0
err2022-12-15
err6
errOAAI
errSheu, Yi-Jun; Kawaguchi, Risa Karakida; Gillis, Jesse; Stillman, Bruce
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errSave
A global high-density chromatin interaction network reveals functional long-range and trans-chromosomal relationships
errGENOME BIOLOGY
IF9.4
err2022-11-09
err6
errOAAI
errLohia, Ruchi; Fox, Nathan; Gillis, Jesse
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errSave
Variability of cross-tissue X-chromosome inactivation characterizes timing of human embryonic lineage specification events
errDEVELOPMENTAL CELL
IF8.7
err2022-08-01
err16
errOAAI
errWerner, Jonathan M.; Ballouz, Sara; Hover, John; Gillis, Jesse
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errSave
Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-04-22
err20
errOAAI
errCrow, Megan; Suresh, Hamsini; Lee, John; Gillis, Jesse
errShare
errSave
Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses
errGENOME RESEARCH
IF5.5
err2022-03-07
err5
errOAAI
errKaminow, Benjamin; Ballouz, Sara; Gillis, Jesse; Dobin, Alexander
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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M Snyder
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R
Ralph H. Hruban
H-index: 209 · Papers: 2.0K
G
Gregory J. Hannon
H-index: 168 · Papers: 495
S
Scott W. Lowe
H-index: 156 · Papers: 977
J
J. Jack Lee
H-index: 146 · Papers: 2.8K
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