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Michal Klein

RWTH Aachen University

21H-index
113Paper Count
3.8KCitation Count
Published Papers 9
Publication Date
OmniPath: integrated knowledgebase for multi-omics analysis
err2025-11-01
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errOAAI
errTurei, Denes; Schaul, Jonathan; Palacio-Escat, Nicolas; Bohar, Balazs; Bai, Yunfan; Ceccarelli, Francesco; Cevrim, Elif; Daley, Macabe; Darcan, Melih; Dimitrov, Daniel; Dogan, Tunca; Domingo-Fernandez, Daniel; Dugourd, Aurelien; Gabor, Attila; Gul, Lejla; Hall, Benjamin A.; Hoyt, Charles Tapley; Ivanova, Olga; Klein, Michal; Lawrence, Toby; Mananes, Diego; Modos, Dezso; Muller-Dott, Sophia; Olbei, Marton; Schmidt, Christina; Sen, Bunyamin; Theis, Fabian J.; Unlu, Atabey; Ulusoy, Erva; Valdeolivas, Alberto; Korcsmaros, Tamas; Saez-Rodriguez, Julio
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Defining and benchmarking open problems in single-cell analysis
err2025-07-01
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errOAAI
errMalte D. Luecken; Scott Gigante; Daniel B. Burkhardt; Robrecht Cannoodt; Daniel C. Strobl; Nikolay S. Markov; Luke Zappia; Giovanni Palla; Wesley Lewis; Daniel Dimitrov; Michael E. Vinyard; D. S. Magruder; Michaela F. Mueller; Alma Andersson; Emma Dann; Qian Qin; Dominik J. Otto; Michal Klein; Olga Borisovna Botvinnik; Louise Deconinck; Kai Waldrant; Sai Nirmayi Yasa; Artur Szałata; Andrew Benz; Zhijian Li; Jonathan M. Bloom; Angela Oliveira Pisco; Julio Saez-Rodriguez; Drausin Wulsin; Luca Pinello; Yvan Saeys; Fabian J. Theis; Smita Krishnaswamy
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Mapping lineage-traced cells across time points with moslin
err2024-10-21
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errOAAI
errLange, Marius; Piran, Zoe; Klein, Michal; Spanjaard, Bastiaan; Klein, Dominik; Junker, Jan Philipp; Theis, Fabian J.; Nitzan, Mor
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Effect of Opaganib on Supplemental Oxygen and Mortality in Patients with Severe SARS-CoV-2 Based upon FIO2 Requirements
err2024-08-26
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errOAAI
errNeuenschwander, Fernando Carvalho; Barnett-Griness, Ofra; Piconi, Stefania; Maor, Yasmin; Sprinz, Eduardo; Assy, Nimer; Khmelnitskiy, Oleg; Lomakin, Nikita V.; Goloshchekin, Boris Mikhailovich; Nahorecka, Ewelina; Calvacante, Adilson Joaquim Westheimer; Ivanova, Anastasia; Zhuravel, Sergey Vladimirovich; Trufanova, Galina Yurevna; Bonora, Stefano; Saffoury, Amer; Mayo, Ami; Shvarts, Yury G.; Rizzardini, Giuliano; de Mello, Rogerio Sobroza; Pilau, Janaina; Klinov, Alexey; Valente-Acosta, Benjamin; Burlaka, Oleg Olegovich; Bakhtina, Natalia; Bar-Meir, Maskit; Shishimorov, Ivan Nikolaevich; Onate-Gutierrez, Jose; Rincon, Cristian Ivan Garcia; Martynenko, Tatiana Ivanovna; Hajjar, Ludhmila Abrahao; Procopio, Ana Carolina Nazare de Mendonca; Simon, Krzysztof; Santiago, Walter Gabriel Chaves; Fronczak, Adam; Hoffmann Filho, Conrado Roberto; Hussein, Osama; Aleksandrovich Martynov, Vladimir; Chichino, Guido; Blewaska, Piotr; Wroblewski, Jacek; Santana, Sergio Saul Irizar; Agudelo, Andres Felipe Ocampo; Barczyk, Adam; Gerlach, Rachael Lask; Campbell, Eppie; Bibliowicz, Aida; Fathi, Reza; Anderson, Patricia; Raday, Gilead; Klein, Michal; Fehrmann, Clara; Eagle, Gina; Ben-Yair, Vered Katz; Levitt, Mark L.
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CellRank 2: unified fate mapping in multiview single-cell data
err2024-06-13
err7
errOAAI
errWeiler, Philipp; Lange, Marius; Klein, Michal; Pe'er, Dana; Theis, Fabian
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The scverse project provides a computational ecosystem for single-cell omics data analysis
err2023-04-10
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PREAI
errVirshup, Isaac; Bredikhin, Danila; Heumos, Lukas; Palla, Giovanni; Sturm, Gregor; Gayoso, Adam; Kats, Ilia; Koutrouli, Mikaela; Berger, Bonnie; Pe'er, Dana; Regev, Aviv; Teichmann, Sarah; Finotello, Francesca; Wolf, F. Alexander; Yosef, Nir; Stegle, Oliver; Theis, Fabian; Angerer, Philipp; Bergen, Volker; Boyeau, Pierre D.; Buettner, Maren; Eraslan, Gokcen; Fischer, David; Frank, Max C.; Hong, Justin; Klein, Michal; Lange, Marius; Lopez, Romain; Lotfollahi, Mohammad; Luecken, Malte; Ramirez, Fidel A.; Regier, Jeffrey; Rybakov, Sergei; Schaar, Anna; Valiollah Pour Amiri, Valeh; Weiler, Philipp J.; Xing, Galen
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Squidpy: a scalable framework for spatial omics analysis
err2022-01-31
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errOAAI
errPalla, Giovanni; Spitzer, Hannah; Klein, Michal; Fischer, David; Schaar, Anna Christina; Kuemmerle, Louis Benedikt; Rybakov, Sergei; Ibarra, Ignacio L.; Holmberg, Olle; Virshup, Isaac; Lotfollahi, Mohammad; Richter, Sabrina; Theis, Fabian J.
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CellRank for directed single-cell fate mapping
err2022-01-13
err274
errOAAI
errLange, Marius; Bergen, Volker; Klein, Michal; Setty, Manu; Reuter, Bernhard; Bakhti, Mostafa; Lickert, Heiko; Ansari, Meshal; Schniering, Janine; Schiller, Herbert B.; Pe'er, Dana; Theis, Fabian J.
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Integrated intra- and intercellular signaling knowledge for multicellular omics analysis
err2021-03-22
err141
errOAAI
errTuerei, Denes; Valdeolivas, Alberto; Gul, Lejla; Palacio-Escat, Nicolas; Klein, Michal; Ivanova, Olga; Oelbei, Marton; Gabor, Attila; Theis, Fabian; Korcsmaros, Tamas; Saez-Rodriguez, Julio
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