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Pieter Mestdagh

department of biomolecular medicine

69H-index
458Paper Count
2.0WCitation Count
Published Papers 157
Publication Date
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Benchmarking DNA barcode decoding strategies under high error rates
errBMC Bioinformatics
IF3.3
err2026-06-23
err0
errOAAI
errFranco Poma-Soto; Hanne Van Droogenbroeck; Brecht Soulliaert; Maya Giridhar; Jürgen Behr; Hamed Sabzalipoor; Mark Somoza; Pieter Mestdagh; Jo Vandesompele
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Widespread DNA off-targeting confounds RNA chromatin occupancy studies
errNature Biotechnology
IF41.7
err2026-05-15
err0
PREAI
errMicah Jonathan Goldrich; Louis Delhaye; Sarah-Lee Bekaert; Bieke Decaesteker; Filip Van Nieuwerburgh; Frank Speleman; Sven Eyckerman; Pieter Mestdagh; Igor Ulitsky
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Deconvoluting fibre type proportions from human skeletal muscle transcriptomics and proteomics data using FibeRtypeR
errThe Journal of Physiology
IF0
err2026-03-13
err0
PREAI
errThibaux Van der Stede; Roger Moreno-Justicia; Freek Van de Casteele; Eline Lievens; Alexia Van de Loock; Jonas Vandecauter; Peter Merseburger; Jimmy Van den Eynden; Delphi Van Haver; An Staes; Lukas Moesgaard; Simon Devos; Morten Hostrup; Pieter Mestdagh; Jo Vandesompele; Ben Stocks; Atul S. Deshmukh; Wim Derave
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errSave
Coordinated regulation by lncRNAs results in tight lncRNA-target couplings
errCell Genomics
IF9
err2025-07-07
err0
errOAAI
errHua-Sheng Chiu; Sonal Somvanshi; Chung-Te Chang; Eric James de Bony de Lavergne; Zhaowen Wei; Chih-Hung Hsieh; Wim Trypsteen; Kathleen A. Scorsone; Ektaben Patel; Tien T. Tang; David B. Flint; Mohammad Javad Najaf Panah; Hyunjae Ryan Kim; Purva Rathi; Yan-Hwa Wu Lee; Sarah E. Woodfield; Sanjeev A. Vasudevan; Andras Attila Heczey; M. Waleed Gaber; Gabriel O. Sawakuchi; Ting-Wen Chen; Pieter Mestdagh; Xuerui Yang; Pavel Sumazin
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Author Correction: Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids
errNature Protocols
IF16
err2025-06-09
err0
PREAI
errEva Blondeel; Sam Ernst; Felix De Vuyst; Ákos Diósdi; Cláudio Pinheiro; Diogo Estêvão; Pekka Rappu; Robin Boiy; Sándor Dedeyne; Ligia Craciun; Vera Goossens; Jonas Dehairs; Tânia Cruz; Dominique Audenaert; Wim Ceelen; Michael Linnebacher; Tom Boterberg; Jo Vandesompele; Pieter Mestdagh; Johan Swinnen; Jyrki Heino; Peter Horvath; Maria José Oliveira; An Hendrix; Pieter Demetter; Olivier De Wever
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Blood collection tube and RNA purification method recommendations for extracellular RNA transcriptome profiling
errNATURE COMMUNICATIONS
IF15.7
err2025-05-15
err0
errOAAI
errAnckaert, Jasper; Cobos, Francisco Avila; Decock, Anneleen; Decruyenaere, Philippe; Deleu, Jill; De Preter, Katleen; De Wever, Olivier; De Wilde, Jilke; Dhondt, Bert; D'huyvetter, Thibaut; Everaert, Celine; Fierro, Carolina; Helsmoortel, Hetty H.; Hendrix, An; Hulstaert, Eva; Koster, Jan; Kuersten, Scott; Mercer, Tim R.; Mestdagh, Pieter; Morlion, Annelien; Nijs, Nele; Nuytens, Justine; Philippron, Annouck; Piofczyk, Thomas; Poma-Soto, Franco; Schoofs, Kathleen; Schroth, Gary P.; Thas, Olivier; Vanden Eynde, Eveline; Vandesompele, Jo; Van Maerken, Tom; Van Paemel, Ruben; Verniers, Kimberly; Verwilt, Jasper; Yigit, Nurten
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Sequential orthogonal assays for longitudinal and endpoint characterization of three-dimensional spheroids
errNATURE PROTOCOLS
IF16
err2025-04-08
err1
PREAI
errBlondeel, Eva; Ernst, Sam; De Vuyst, Felix; Diosdi, Akos; Pinheiro, Claudio; Estevao, Diogo; Rappu, Pekka; Boiy, Robin; Dedeyne, Sandor; Craciun, Ligia; Goossens, Vera; Dehairs, Jonas; Cruz, Tania; Audenaert, Dominique; Ceelen, Wim; Linnebacher, Michael; Boterberg, Tom; Vandesompele, Jo; Mestdagh, Pieter; Swinnen, Johan; Heino, Jyrki; Horvath, Peter; Hendrix, An; De Metter, Pieter; De Wever, Olivier
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The Super Enhancer-Driven Long Noncoding RNA PRKCQ-AS1 Promotes Neuroblastoma Tumorigenesis by Interacting With MSI2 Protein and Is Targetable by Small Molecule Compounds
errADVANCED SCIENCE
IF14.1
err2025-03-18
err0
errOAAI
errMondal, S; Liu, PY; Seneviratne, J; De Weck, A; Venkat, P; Mayoh, C; Wu, J; Maag, J; Chen, JW; Wong, M; Bartonicek, N; Khoo, P; Jin, L; Ludlow, LE; Ziegler, DS; Trahair, T; Mestdagh, P; Cheung, BB; Li, JY; Dinger, ME; Street, I; Zhang, XD; Marshall, GM; Liu, T
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errSave
Human skeletal muscle fiber heterogeneity beyond myosin heavy chains
errNATURE COMMUNICATIONS
IF15.7
err2025-02-19
err2
errOAAI
errRoger Moreno-Justicia; Thibaux Van der Stede; Ben Stocks; Jenni Laitila; Robert A. Seaborne; Alexia Van de Loock; Eline Lievens; Diana Samodova; Leyre Marín-Arraiza; Oksana Dmytriyeva; Robin Browaeys; Kim Van Vossel; Lukas Moesgaard; Nurten Yigit; Jasper Anckaert; Anneleen Weyns; Ruud Van Thienen; Ronni E. Sahl; Edmar Zanoteli; Michael W. Lawlor; Michael Wierer; Pieter Mestdagh; Jo Vandesompele; Julien Ochala; Morten Hostrup; Wim Derave; Atul S. Deshmukh
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errSave
Transcriptomic signatures of human single skeletal muscle fibers in response to high-intensity interval exercise
errAMERICAN JOURNAL OF PHYSIOLOGY-CELL PHYSIOLOGY
IF4.7
err2024-11-01
err2
PREAI
errVan der Stede, Thibaux; Van de Loock, Alexia; Lievens, Eline; Yigit, Nurten; Anckaert, Jasper; Van Thienen, Ruud; Weyns, Anneleen; Mestdagh, Pieter; Vandesompele, Jo; Derave, Wim
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A co-culture model to study modulators of tumor immune evasion through scalable arrayed CRISPR-interference screens
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2024-10-21
err0
errOAAI
errMartinez, Ramiro; Finocchiaro, Chiara; Delhaye, Louis; Gysens, Fien; Anckaert, Jasper; Trypsteen, Wim; Versteven, Maarten; Lion, Eva; Van Lint, Sandra; Vermaelen, Karim; de Bony, Eric James; Mestdagh, Pieter
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Interactome of the HIV-1 proteome and human host RNA
errEMBO REPORTS
IF6.2
err2024-08-09
err0
PREAI
errSchynkel, Tinus; van Snippenberg, Willem; Verniers, Kimberly; Jang, Gwendolyn M.; Krogan, Nevan J.; Mestdagh, Pieter; Vandekerckhove, Linos; Trypsteen, Wim
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miR-99b-5p, miR-380-3p, and miR-485-3p are novel chemosensitizing miRNAs in high-risk neuroblastoma (vol 30, pg 1119, 2022)
errMOLECULAR THERAPY
IF12
err2024-06-01
err0
errOAAI
errHolliday, Holly; Yang, Jessica; Dodson, Eoin; Nikolic, Iva; Kamili, Alvin; Wheatley, Madeleine; Deng, Niantao; Alexandrou, Sarah; Davis, Thomas P.; Kavallaris, Maria; Caldon, C. Elizabeth; Mccarroll, Joshua; De Preter, Katleen; Mestdagh, Pieter; Marshall, Glenn M.; Simpson, Kaylene J.; Fletcher, Jamie; Swarbrick, Alexander
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Circulating microRNAs as Non-Invasive Biomarkers in Endometriosis Diagnosis-A Systematic Review
errBIOMEDICINES
IF3.9
err2024-04-17
err6
errOAAI
errVanhie, Arne; Caron, Ellen; Vermeersch, Eveline; Dorien, O.; Tomassetti, Carla; Meuleman, Christel; Mestdagh, Pieter; D'Hooghe, Thomas M.
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Identification and validation of extracellular vesicle reference genes for the normalization of RT-qPCR data
errJOURNAL OF EXTRACELLULAR VESICLES
IF14.5
err2024-03-28
err2
errOAAI
errPinheiro, Claudio; Guilbert, Nike; Lippens, Lien; Roux, Quentin; Boiy, Robin; Fischer, Suzanne; Van Dorpe, Sofie; De Craene, Bram; Berx, Geert; Boterberg, Tom; Sys, Gwen; Denys, Hannelore; Miinalainen, Ilkka; Mestdagh, Pieter; Vandesompele, Jo; De Wever, Olivier; Hendrix, An
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Exploiting tumor RNA-sequencing data for prediction of immune checkpoint inhibition response
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errMestdagh, Pieter; Van Dam, Pieter-Jan; De Baene, Frederick; Fierro, Carolina; Van Hoof, Elise; Riviere, Emmanuel; Dangreau, Hanne; Van Cauwenberge, Reindert; Vandesompele, Jo
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Selective Replacement of Cholesterol with Cationic Amphiphilic Drugs Enables the Design of Lipid Nanoparticles with Improved RNA Delivery
errNANO LETTERS
IF9.1
err2024-03-04
err5
errOAAI
errBogaert, Bram; Debisschop, Aliona; Ehouarne, Thomas; Van Eeckhoutte, Hannelore P.; De Volder, Joyceline; Jacobs, An; Pottie, Eline; De Rycke, Riet; Crabbe, Aurelie; Mestdagh, Pieter; Lentacker, Ine; Brusselle, Guy G.; Stove, Christophe; Verstraelen, Sandra; Maes, Tania; Bracke, Ken R.; De Smedt, Stefaan C.; Raemdonck, Koen
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errSave
Exploiting tumor RNA-sequencing data for prediction of immune checkpoint inhibition response
errMOLECULAR CANCER THERAPEUTICS
IF5.5
err2023-12-01
err0
PREAI
errMestdagh, Pieter
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Crosstalk between memory B cells and fibroblasts contributes to COPD pathogenesis
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2023-10-27
err1
PREAI
errJacobs, Merel; Anckaert, Jasper; Faiz, Alen; Van Gaever, Femke; Verschraegen, Sven; Salhi, Bihiyga; Schynkel, Tinus; Venken, Koen; Elewaut, Dirk; Hansbro, Phil; Brusselle, Guy; Mestdagh, Pieter; Seys, Leen; Bracke, Ken
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Mammalian Target of Rapamycin Inhibition Enhances Delivery and Activity of Antisense Oligonucleotides in Uveal Melanoma Cells
errNUCLEIC ACID THERAPEUTICS
IF4.7
err2023-08-01
err2
errOAAI
errDewaele, Shanna; Delhaye, Louis; De Paepe, Boel; Bogaert, Bram; Martinez, Ramiro; Anckaert, Jasper; Yigit, Nurten; Nuytens, Justine; Van Coster, Rudy; Eyckerman, Sven; Raemdonck, Koen; Mestdagh, Pieter
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Research Directions

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