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Séan O’Donoghue

Garvan Institute of Medical Research

35H-index
233Paper Count
6.5KCitation Count
Published Papers 22
Publication Date
Increased core body temperature exacerbates defective protein prenylation in mouse models of mevalonate kinase deficiency
err2022-10-03
err4
errOAAI
errMunoz, Marcia A.; Skinner, Oliver P.; Masle-Farquhar, Etienne; Jurczyluk, Julie; Xiao, Ya; Fletcher, Emma K.; Kristianto, Esther; Hodson, Mark P.; O'Donoghue, Sean I.; Kaur, Sandeep; Brink, Robert; Zahra, David G.; Deenick, Elissa K.; Perry, Kristen A.; Robertson, Avril A. B.; Mehr, Sam; Hissaria, Pravin; Mulders-Manders, Catharina M.; Simon, Anna; Rogers, Michael J.
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A roadmap for the functional annotation of protein families: a community perspective
err2022-08-12
err22
errOAAI
errde Crecy-Lagard, Valerie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J.; Burley, Stephen K.; Cleveland, Stacey; Colwell, Lucy J.; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M.; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D.; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D.; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J.; Natale, Darren A.; Nelson, William C.; O'Donoghue, Sean; Orengo, Christine; O'Toole, Katherine H.; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J.; Rodionov, Dmitri; Rodionova, Irina A.; Rudolf, Jeffrey D.; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D.; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R.; Wood, Valerie; Wood-Charlson, Elisha M.; Xu, Jin
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SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
err2021-09-14
err21
errOAAI
errO'Donoghue, Sean, I; Schafferhans, Andrea; Sikta, Neblina; Stolte, Christian; Kaur, Sandeep; Ho, Bosco K.; Anderson, Stuart; Procter, James B.; Dallago, Christian; Bordin, Nicola; Adcock, Matt; Rost, Burkhard
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PredictProtein - Predicting Protein Structure and Function for 29 Years
err2021-05-17
err160
errOAAI
errBernhofer, Michael; Dallago, Christian; Karl, Tim; Satagopam, Venkata; Heinzinger, Michael; Littmann, Maria; Olenyi, Tobias; Qiu, Jiajun; Schuetze, Konstantin; Yachdav, Guy; Ashkenazy, Haim; Ben-Tal, Nir; Bromberg, Yana; Goldberg, Tatyana; Kajan, Laszlo; O'Donoghue, Sean; Sander, Chris; Schafferhans, Andrea; Schlessinger, Avner; Vriend, Gerrit; Mirdita, Milot; Gawron, Piotr; Gu, Wei; Jarosz, Yohan; Trefois, Christophe; Steinegger, Martin; Schneider, Reinhard; Rost, Burkhard
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The development of an epilepsy electronic patient portal: Facilitating both patient empowerment and remote clinician-patient interaction in a post-COVID-19 world
err2020-08-10
err26
errOAAI
errPower, Kevin; McCrea, Zita; White, Maire; Breen, Annette; Dunleavy, Brendan; O'Donoghue, Sean; Jacquemard, Tim; Lambert, Veronica; El-Naggar, Hany; Delanty, Norman; Doherty, Colin; Fitzsimons, Mary
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Temporal ordering of omics and multiomic events inferred from time-series data
err2020-07-16
err9
errOAAI
errKaur, Sandeep; Peters, Timothy J.; Yang, Pengyi; Luu, Laurence Don Wai; Vuong, Jenny; Krycer, James R.; O'Donoghue, Sean, I
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Dark Proteins Important for Cellular Function
err2018-11-19
err5
PREAI
errSchafferhans, Andrea; O'Donoghue, Sean I.; Heinzinger, Michael; Rost, Burkhard
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The Dark Proteome Database
err2017-07-20
err12
errOAAI
errPerdigao, Nelson; Rosa, Agostinho C.; O'Donoghue, Sean I.
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Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
err2016-04-06
err261
errOAAI
errTaberlay, Phillippa C.; Achinger-Kawecka, Joanna; Lun, Aaron T. L.; Buske, Fabian A.; Sabir, Kenneth; Gould, Cathryn M.; Zotenko, Elena; Bert, Saul A.; Giles, Katherine A.; Bauer, Denis C.; Smyth, Gordon K.; Stirzaker, Clare; O'Donoghue, Sean I.; Clark, Susan J.
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Unexpected features of the dark proteome
err2015-11-17
err138
errOAAI
errPerdigao, Nelson; Heinrich, Julian; Stolte, Christian; Sabir, Kenneth S.; Buckley, Michael J.; Tabor, Bruce; Signal, Beth; Gloss, Brian S.; Hammang, Christopher J.; Rost, Burkhard; Schafferhans, Andrea; O'Donoghue, Sean I.
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How to learn about gene function: text-mining or ontologies?
errMETHODS
IF4.3
err2015-03-01
err19
PREAI
errSoldatos, Theodoros G.; Perdigao, Nelson; Brown, Nigel P.; Sabir, Kenneth S.; O'Donoghue, Sean I.
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Aquaria: simplifying discovery and insight from protein structures
err2015-01-29
err48
PREAI
errO'Donoghue, Sean I.; Sabir, Kenneth S.; Kalemanov, Maria; Stolte, Christian; Wellmann, Benjamin; Ho, Vivian; Roos, Manfred; Perdigao, Nelson; Buske, Fabian A.; Heinrich, Julian; Rost, Burkhard; Schafferhans, Andrea
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COMPARTMENTS: unification and visualization of protein subcellular localization evidence
err2014-02-25
err471
errOAAI
errBinder, Janos X.; Pletscher-Frankild, Sune; Tsafou, Kalliopi; Stolte, Christian; O'Donoghue, Sean I.; Schneider, Reinhard; Jensen, Lars Juhl
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Visualising intrinsic disorder and conformational variation in protein ensembles
err2014-01-01
err4
PREAI
errHeinrich, Julian; Krone, Michael; O'Donoghue, Sean I.; Weiskopf, Daniel
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Caipirini: using gene sets to rank literature
err2012-02-01
err10
errOAAI
errSoldatos, Theodoros G.; O'Donoghue, Sean I.; Satagopam, Venkata P.; Barbosa-Silva, Adriano; Pavlopoulos, Georgios A.; Wanderley-Nogueira, Ana Carolina; Soares-Cavalcanti, Nina Mota; Schneider, Reinhard
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Visualizing biological data-now and in the future
err2010-03-01
err105
PREAI
errO'Donoghue, Sean I.; Gavin, Anne-Claude; Gehlenborg, Nils; Goodsell, David S.; Heriche, Jean-Karim; Nielsen, Cydney B.; North, Chris; Olson, Arthur J.; Procter, James B.; Shattuck, David W.; Walter, Thomas; Wong, Bang
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Visualization of omics data for systems biology
err2010-03-01
err477
PREAI
errGehlenborg, Nils; O'Donoghue, Sean I.; Baliga, Nitin S.; Goesmann, Alexander; Hibbs, Matthew A.; Kitano, Hiroaki; Kohlbacher, Oliver; Neuweger, Heiko; Schneider, Reinhard; Tenenbaum, Dan; Gavin, Anne-Claude
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Visualization of macromolecular structures
err2010-03-01
err119
errOAAI
errO'Donoghue, Sean I.; Goodsell, David S.; Frangakis, Achilleas S.; Jossinet, Fabrice; Laskowski, Roman A.; Nilges, Michael; Saibil, Helen R.; Schafferhans, Andrea; Wade, Rebecca C.; Westhof, Eric; Olson, Arthur J.
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Martini: using literature keywords to compare gene sets
err2009-10-24
err26
errOAAI
errSoldatos, Theodoros G.; O'Donoghue, Sean I.; Satagopam, Venkata P.; Jensen, Lars J.; Brown, Nigel P.; Barbosa-Silva, Adriano; Schneider, Reinhard
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Reflect: augmented browsing for the life scientist
err2009-06-01
err64
errOAAI
errPafilis, Evangelos; O'Donoghue, Sean I.; Jensen, Lars J.; Horn, Heiko; Kuhn, Michael; Brown, Nigel P.; Schneider, Reinhard
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