William Nelson - Publications, H-index & Citations

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William Nelson

pacific northwest national laboratory

143H-index

2.4KPaper Count

13.9WCitation Count

Published Papers 57

Publication Date

Preparation method shapes the recovery and ecological interpretation of DNA and RNA soil viral communities

Nature Communications

IF15.7

2026-07-28

OAAI

Josué A. Rodríguez-Ramos; Amy E. Zimmerman; Ruonan Wu; Sheryl L. Bell; Trinidad D. Alfaro; Nicholas J. Reichart; Kirsten S. Hofmockel; William C. Nelson

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Chemoproteomic Elucidation of β-Lactam Drug Targets in Mycobacterium abscessus

ACS Infectious Diseases

IF3.8

2026-04-17

OAAI

Kaylyn L. Devlin; Emily Hutchinson; Damon T. Leach; Leo J. Gorham; William C. Nelson; Gyanu Lamichhane; Vivian S. Lin; Kimberly E. Beatty

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A Rhodopseudomonas strain with a substantially smaller genome retains the core metabolic versatility of its genus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2025-03-01

OAAI

Oda, Yasuhiro; Nelson, William C.; Alexander, William G.; Nguyen, Stella; Egbert, Robert G.; Harwood, Caroline S.

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Environmental matrix and moisture influence soil microbial phenotypes in a simplified porous media incubation

MSYSTEMS

IF4.6

2025-02-24

OAAI

Rodriguez-Ramos, Josue; Sadler, Natalie; Zegeye, Elias K.; Farris, Yuliya; Purvine, Samuel; Couvillion, Sneha; Nelson, William C.; Hofmockel, Kirsten S.

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Coupling flux balance analysis with reactive transport modeling through machine learning for rapid and stable simulation of microbial metabolic switching

SCIENTIFIC REPORTS

IF3.9

2025-02-19

OAAI

Song, Hyun-Seob; Ahamed, Firnaaz; Lee, Joon-Yong; Henry, Christopher S.; Edirisinghe, Janaka N.; Nelson, William C.; Chen, Xingyuan; Moulton, J. David; Scheibe, Timothy D.

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Phenylpropanoid methyl esterase unlocks catabolism of aromatic biological nitrification inhibitors

ISME JOURNAL

IF10

2025-01-01

OAAI

Wilson, Andrew; Van Fossen, Elise; Shrestha, Ritu; Frank, Andrew; Trotter, Valentine; Baldino, Henri; Poirier, Brenton; Kim, Young-Mo; Nelson, William; Simmons, Tuesday; Coleman-Derr, Devin; Deutschbauer, Adam; Egbert, Robert; Elmore, Joshua

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Profiling sorghum-microbe interactions with a specialized photoaffinity probe identifies key sorgoleone binders in Acinetobacter pittii

APPLIED AND ENVIRONMENTAL MICROBIOLOGY

IF3.7

2024-10-23

PREAI

Van Fossen, Elise M.; Kroll, Jared O.; Anderson, Lindsey N.; Mcnaughton, Andrew D.; Herrera, Daisy; Oda, Yasuhiro; Wilson, Andrew J.; Nelson, William C.; Kumar, Neeraj; Frank, Andrew R.; Elmore, Joshua R.; Handakumbura, Pubudu; Lin, Vivian S.; Egbert, Robert G.

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Hi-C metagenome sequencing reveals soil phage-host interactions

NATURE COMMUNICATIONS

IF15.7

2023-11-23

OAAI

Wu, Ruonan; Davison, Michelle R.; Nelson, William C.; Smith, Montana L.; Lipton, Mary S.; Jansson, Janet K.; McClure, Ryan S.; McDermott, Jason E.; Hofmockel, Kirsten S.

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A Mineral-Doped Micromodel Platform Demonstrates Fungal Bridging of Carbon Hot Spots and Hyphal Transport of Mineral-Derived Nutrients

MSYSTEMS

IF4.6

2022-12-20

OAAI

Bhattacharjee, Arunima; Qafoku, Odeta; Richardson, Jocelyn A.; Anderson, Lindsey N.; Schwarz, Kaitlyn; Bramer, Lisa M.; Lomas, Gerard X.; Orton, Daniel J.; Zhu, Zihua; Engelhard, Mark H.; Bowden, Mark E.; Nelson, William C.; Jumpponen, Ari; Jansson, Janet K.; Hofmockel, Kirsten S.; Anderton, Christopher R.

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Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes

MSYSTEMS

IF4.6

2022-10-26

OAAI

McClure, Ryan; Farris, Yuliya; Danczak, Robert; Nelson, William; Song, Hyun-Seob; Kessell, Aimee; Lee, Joon-Yong; Couvillion, Sneha; Henry, Christopher; Jansson, Janet K.; Hofmockel, Kirsten S.

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A roadmap for the functional annotation of protein families: a community perspective

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2022-08-12

OAAI

de Crecy-Lagard, Valerie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J.; Burley, Stephen K.; Cleveland, Stacey; Colwell, Lucy J.; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M.; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D.; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D.; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J.; Natale, Darren A.; Nelson, William C.; O'Donoghue, Sean; Orengo, Christine; O'Toole, Katherine H.; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J.; Rodionov, Dmitri; Rodionova, Irina A.; Rudolf, Jeffrey D.; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D.; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R.; Wood, Valerie; Wood-Charlson, Elisha M.; Xu, Jin

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An activity-based probe targeting the streptococcal virulence factor C5a peptidase

CHEMICAL COMMUNICATIONS

IF4.2

2022-01-01

OAAI

Krishnamoorthy, Sankarganesh; Steiger, Andrea K.; Nelson, William C.; Egbert, Robert G.; Wright, Aaron T.

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DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes

MBIO

IF4.7

2021-12-21

OAAI

Wu, Ruonan; Davison, Michelle R.; Nelson, William C.; Graham, Emily B.; Fansler, Sarah J.; Farris, Yuliya; Bell, Sheryl L.; Godinez, Iobani; Mcdermott, Jason E.; Hofmockel, Kirsten S.; Jansson, Janet K.

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A Histoplasma capsulatum Lipid Metabolic Map Identifies Antifungal Targets

MBIO

IF4.7

2021-12-21

OAAI

Zamith-Miranda, Daniel; Heyman, Heino M.; Burnet, Meagan C.; Couvillion, Sneha P.; Zheng, Xueyun; Munoz, Nathalie; Nelson, William C.; Kyle, Jennifer E.; Zink, Erika M.; Weitz, Karl K.; Bloodsworth, Kent J.; Clair, Geremy; Zucker, Jeremy D.; Teuton, Jeremy R.; Payne, Samuel H.; Kim, Young-Mo; Gil, Morayma Reyes; Baker, Erin S.; Bredeweg, Erin L.; Nosanchuk, Joshua D.; Nakayasu, Ernesto S.

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The Specific Carbohydrate Diet and Diet Modification as Induction Therapy for Pediatric Crohn's Disease: A Randomized Diet Controlled Trial

NUTRIENTS

IF5

2020-12-06

OAAI

Suskind, David L.; Lee, Dale; Kim, Young-Mo; Wahbeh, Ghassan; Singh, Namita; Braly, Kimberly; Nuding, Mason; Nicora, Carrie D.; Purvine, Samuel O.; Lipton, Mary S.; Jansson, Janet K.; Nelson, William C.

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Representing Organic Matter Thermodynamics in Biogeochemical Reactions via Substrate-Explicit Modeling

FRONTIERS IN MICROBIOLOGY

IF4.5

2020-10-23

OAAI

Song, Hyun-Seob; Stegen, James C.; Graham, Emily B.; Lee, Joon-Yong; Garayburu-Caruso, Vanessa A.; Nelson, William C.; Chen, Xingyuan; Moulton, J. David; Scheibe, Timothy D.

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Deconstructing the Soil Microbiome into Reduced-Complexity Functional Modules

MBIO

IF4.7

2020-08-25

OAAI

Naylor, Dan; Fansler, Sarah; Brislawn, Colin; Nelson, William C.; Hofmockel, Kirsten S.; Jansson, Janet K.; McClure, Ryan

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Minimal Interspecies Interaction Adjustment (MIIA): Inference of Neighbor-Dependent Interactions in Microbial Communities

FRONTIERS IN MICROBIOLOGY

IF4.5

2019-06-11

OAAI

Song, Hyun-Seob; Lee, Joon-Yong; Haruta, Shin; Nelson, William C.; Lee, Dong-Yup; Lindemann, Stephen R.; Fredrickson, Jim K.; Bernstein, Hans C.

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Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli (vol 9, e01905-18, 2018)

MBIO

IF4.7

2019-04-30

OAAI

Christensen, David G.; Meyer, Jesse G.; Baumgartner, Jackson T.; D'Souza, Alexandria K.; Nelson, William C.; Payne, Samuel H.; Kuhn, Misty L.; Schilling, Birgit; Wolfe, Alan J.

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Identification of Novel Protein Lysine Acetyltransferases in Escherichia coli

MBIO

IF4.7

2018-11-07

OAAI

Christensen, David G.; Meyer, Jesse G.; Baumgartner, Jackson T.; D'Souza, Alexandria K.; Nelson, William C.; Payne, Samuel H.; Kuhn, Misty L.; Schilling, Birgit; Wolfe, Alan J.

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Research Directions