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Contemporary prognostic signatures and refined risk stratification of gliomas: An analysis of 4400 tumors Ghosh, Hia S.; Patel, Ruchit, V; Woodward, Eleanor; Greenwald, Noah F.; Bhave, Varun M.; Maury, Eduardo A.; Cello, Gregory; Hoffman, Samantha E.; Li, Yvonne; Gupta, Hersh; Youssef, Gilbert; Spurr, Liam F.; Vogelzang, Jayne; Touat, Mehdi; Dubois, Frank; Cherniack, Andrew D.; Guo, Xiaopeng; Tavakol, Sherwin; Cioffi, Gino; Lindeman, Neal, I; Ligon, Azra H.; Chiocca, E. Antonio; Reardon, David A.; Wen, Patrick Y.; Meredith, David M.; Santagata, Sandro; Barnholtz-Sloan, Jill S.; Ligon, Keith L.; Beroukhim, Rameen; Bi, Wenya Linda Share Save
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The multimodality cell segmentation challenge: toward universal solutions Ma, Jun; Xie, Ronald; Ayyadhury, Shamini; Ge, Cheng; Gupta, Anubha; Gupta, Ritu; Gu, Song; Zhang, Yao; Lee, Gihun; Kim, Joonkee; Lou, Wei; Li, Haofeng; Upschulte, Eric; Dickscheid, Timo; de Almeida, Jose Guilherme; Wang, Yixin; Han, Lin; Yang, Xin; Labagnara, Marco; Gligorovski, Vojislav; Scheder, Maxime; Rahi, Sahand Jamal; Kempster, Carly; Pollitt, Alice; Espinosa, Leon; Mignot, Tam; Middeke, Jan Moritz; Eckardt, Jan-Niklas; Li, Wangkai; Li, Zhaoyang; Cai, Xiaochen; Bai, Bizhe; Greenwald, Noah F.; Van Valen, David; Weisbart, Erin; Cimini, Beth A.; Cheung, Trevor; Brueck, Oscar; Bader, Gary D.; Wang, Bo Share Save
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Single-Cell Imaging Maps Inflammatory Cell Subsets to Pulmonary Arterial Hypertension Vasculopathy Ferrian, Selena; Cao, Aiqin; McCaffrey, Erin F.; Saito, Toshie; Greenwald, Noah F.; Nicolls, Mark R.; Bruce, Trevor; Zamanian, Roham T.; Del Rosario, Patricia; Rabinovitch, Marlene; Angelo, Michael Share Save
Loss-of-function mutations in Dnmt3a and Tet2 lead to accelerated atherosclerosis and concordant macrophage phenotypes Rauch, Philipp J.; Gopakumar, Jayakrishnan; Silver, Alexander J.; Nachun, Daniel; Ahmad, Herra; Mcconkey, Marie; Nakao, Tetsushi; Bosse, Marc; Rentz, Thiago; Gonzalez, Nora Vivanco; Greenwald, Noah F.; Mccaffrey, Erin F.; Khair, Zumana; Gopakumar, Manu; Rodrigues, Kameron B.; Lin, Amy E.; Sinha, Eti; Fefer, Maia; Cohen, Drew N.; Vromman, Amelie; Shvartz, Eugenia; Sukhova, Galina; Bendall, Sean; Angelo, Michael; Libby, Peter; Ebert, Benjamin L.; Jaiswal, Siddhartha Share Save
Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering Liu, Candace C.; Greenwald, Noah F.; Kong, Alex; McCaffrey, Erin F.; Leow, Ke Xuan; Mrdjen, Dunja; Cannon, Bryan J.; Rumberger, Josef Lorenz; Varra, Sricharan Reddy; Angelo, Michael Share Save
Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP) Jain, Sanjay; Pei, Liming; Spraggins, Jeffrey M.; Angelo, Michael; Carson, James P.; Gehlenborg, Nils; Ginty, Fiona; Goncalves, Joana P.; Hagood, James S.; Hickey, John W.; Kelleher, Neil L.; Laurent, Louise C.; Lin, Shin; Lin, Yiing; Liu, Huiping; Naba, Alexandra; Nakayasu, Ernesto S.; Qian, Wei-Jun; Radtke, Andrea; Robson, Paul; Stockwell, Brent R.; Van de Plas, Raf; Vlachos, Ioannis S.; Zhou, Mowei; Boerner, Katy; Snyder, Michael P.; Ahn, Kyung Jin; Allen, Jamie; Anderson, David M.; Anderton, Christopher R.; Curcio, Christine; Angelin, Alessia; Arvanitis, Constadina; Atta, Lyla; Awosika-Olumo, Demi; Bahmani, Amir; Bai, Huajun; Balderrama, Karol; Balzano, Leandro; Bandyopadhyay, Gautam; Bandyopadhyay, Shovik; Bar-Joseph, Ziv; Barnhart, Kurt; Barwinska, Daria; Becich, Michael; Becker, Laren; Becker, Winston; Bedi, Kenneth; Bendall, Sean; Benninger, Kathy; Betancur, David; Bettinger, Keith; Billings, Sunteasja; Blood, Philip; Bolin, Daniel; Border, Samuel; Bosse, Marc; Bramer, Lisa; Brewer, Maya; Brusko, Maigan; Bueckle, Andreas; Burke, Karl; Burnum-Johnson, Kristin; Butcher, Eugene; Butterworth, Elizabeth; Cai, Long; Calandrelli, Riccardo; Caldwell, Michael; Campbell-Thompson, Martha; Cao, Dongfeng; Cao-Berg, Ivan; Caprioli, Richard; Caraccio, Chiara; Caron, Anita; Carroll, Megan; Chadwick, Chrystal; Chen, Angela; Chen, Derek; Chen, Fei; Chen, Haoran; Chen, Jing; Chen, Li; Chen, Lu; Chiacchia, Kenneth; Cho, Sanghee; Chou, Peter; Choy, Lisa; Cisar, Cecilia; Clair, Geremy; Clarke, Laura; Clouthier, Kelly A.; Colley, Madeline E.; Conlon, Kristin; Conroy, John; Contrepois, Kevin; Corbett, Anthony; Corwin, Alex; Cotter, Daniel; Courtois, Elise; Cruz, Aaron; Csonka, Christopher; Czupil, Kimberley; Daiya, Vicky; Dale, Kali; Davanagere, Shakeel Ahamed; Dayao, Monica; de Caestecker, Mark P.; Decker, Aubrianna; Deems, Stephen; Degnan, David; Desai, Tushar; Deshpande, Vikrant; Deutsch, Gail; Devlin, Michelle; Diep, Dinh; Dodd, Carla; Donahue, Sean; Dong, Weixiu; Peixoto, Rafael dos Santos; Duffy, Michael; Dufresne, Martin; Duong, Thu Elizabeth; Dutra, Jennifer; Eadon, Michael T.; El-Achkar, Tarek M.; Enninful, Archibald; Eraslan, Gokcen; Eshelman, Diane; Espin-Perez, Almudena; Esplin, Edward D.; Esselman, Allison; Falo, Louis D.; Falo, Louis; Fan, Jean; Fan, Rong; Farrow, Melissa A.; Farzad, Negin; Favaro, Patricia; Fermin, Jamie; Filiz, Ferda; Filus, Shane; Fisch, Kathleen; Fisher, Eyal; Fisher, Stephen; Flowers, Katelyn; Flynn, William F.; Fogo, Agnes B.; Fu, Dongtao (Ann); Fulcher, James; Fung, Anthony; Furst, Derek; Gallant, Michael; Gao, Fu; Gao, Yu; Gaulton, Kyle; Gaut, Joseph P.; Gee, James; Ghag, Reetika R.; Ghazanfar, Shila; Ghose, Soumya; Gisch, Debora; Gold, Ilan; Gondalia, Aashay; Gorman, Brittney; Greenleaf, William; Greenwald, Noah; Gregory, Brian; Guo, Rong; Gupta, Rajat; Hakimian, Hunter; Haltom, Jeff; Halushka, Marc; Han, Kyu Sang; Hanson, Casey; Harbury, Pehr; Hardi, Josef; Harlan, Linda; Harris, Raymond C.; Hartman, Austin; Heidari, Elyas; Helfer, Jesse; Helminiak, David; Hemberg, Martin; Henning, Nathaniel; Herr, Bruce W., II; Ho, Jonhan; Holden-Wiltse, Jeanne; Hong, Seung-Hyun; Hong, Young-Kwon; Honick, Brendan; Hood, Greg; Hu, Po; Hu, Qiwen; Huang, Molly; Huyck, Heidie; Imtiaz, Tamjid; Isberg, Olof Gerdur; Itkin, Maxim; Jackson, Dana; Jacobs, Marni; Jain, Yashvardhan; Jewell, David; Jiang, Lihua; Jiang, Zhenghui G.; Johnston, Sarah; Joshi, Pujan; Ju, Yingnan; Judd, Audra; Kagel, Adam; Kahn, Ari; Kalavros, Nikolaos; Kalhor, Kian; Karagkouni, Dimitra; Karathanos, Thomas; Karunamurthy, Arivarasan; Katari, Suhas; Kates, Heather; Kaushal, Madhurima; Keener, Nicholas; Keller, Mark; Kenney, Mariah; Kern, Colin; Kharchenko, Peter; Kim, Junhyong; Kingsford, Carl; Kirwan, Jessica; Kiselev, Vladimir; Kishi, Jocelyn; Kitata, Reta Birhanu; Knoten, Amanda; Kollar, Charles; Krishnamoorthy, Praveen; Kruse, Angela R. S.; Da, Kuang; Kundaje, Anshul; Kutschera, Eric; Kwon, Yumi; Lake, Blue B.; Lancaster, Samuel; Langlieb, Jonah; Lardenoije, Roy; Laronda, Monica; Laskin, Julia; Lau, Ken; Lee, Hayan; Lee, Maria; Lee, Mejeong; Strekalova, Yulia Levites; Li, Dongshunyi; Li, Jennifer; Li, Jilong; Li, Xiangtang; Li, Zhi; Liao, Yen-Chen; Liaw, Tiffany; Lin, Pei; Lin, Yulieh; Lindsay, Scott; Liu, Chunjie; Liu, Yang; Liu, Yuan; Lott, Marie; Lotz, Martin; Lowery, Lisa; Lu, Peiran; Lu, Xinyue; Lucarelli, Nicholas; Lun, Xiaokang; Luo, Zhifei; Ma, Jian; Macosko, Evan; Mahajan, Mayank; Maier, Libby; Makowski, Danika; Malek, Morad; Manthey, David; Manz, Trevor; Margulies, Kenneth; Marioni, John; Martindale, Matthew; Mason, Cayla; Mathews, Clayton; Maye, Peter; McCallum, Chuck; McDonough, Elizabeth; McDonough, Liz; Mcdowell, Hannah; Meads, Morgan; Medina-Serpas, Miguel; Ferreira, Ricardo Melo; Messinger, Jeffrey; Metis, Kay; Migas, Lukasz G.; Miller, Brendan; Mimar, Sayat; Minor, Brittany; Misra, Ravi; Missarova, Alsu; Mistretta, Christopher; Moens, Roger; Moerth, Eric; Moffitt, Jeffrey; Molla, Gesmira; Monroe, Matthew; Monte, Emma; Morgan, Mike; Muraro, Daniele; Murphy, Bob (Robert); Murray, Evan; Musen, Mark A.; Naglah, Ahmed; Nasamran, Chanond; Neelakantan, Taruna; Nevins, Stephanie; Hieu Nguyen; Nam Nguyen; Tram Nguyen; Tri Nguyen; Nigra, Deb; Nofal, Michel; Nolan, Garry; Nwanne, Gerald; O'Connor, Martin; Okuda, Kenichi; Olmer, Merissa; O'Neill, Kathleen; Otaluka, Nancy; Pang, Minxing; Parast, Mana; Pasa-Tolic, Ljiljana; Paten, Benedict; Patterson, Nathan Heath; Peng, Ting; Phillips, Gesina; Pichavant, Mina; Piehowski, Paul; Pilner, Hannah; Pingry, Ellie; Pita-Juarez, Yered; Plevritis, Sylvia; Ploumakis, Athanasios; Pouch, Alison; Pryhuber, Gloria; Puerto, Juan; Qaurooni, Danial; Qin, Ling; Quardokus, Ellen M.; Rajbhandari, Presha; Rakow-Penner, Rebecca; Ramasamy, Ramalakshmi; Read, David; Record, Elizabeth G.; Reeves, David; Ricarte, Allyson; Rodriguez-Soto, Ana; Ropelewski, Alexander; Rosario, Jean; Roselkis, Morla-Adames; Rowe, David; Roy, Tarun Kanti; Ruffalo, Matt; Ruschman, Nancy; Sabo, Angela; Sachdev, Nina; Saka, Sinem; Salamon, Diane; Sarder, Pinaki; Sasaki, Hiroshi; Satija, Rahul; Saunders, Diane; Sawka, Riley; Schey, Kevin; Schlehlein, Heidi; Scholten, David; Schultz, Sarah; Schwartz, Lauren; Schwenk, Melissa; Scibek, Robin; Segre, Ayellet; Serrata, Matthew; Shands, Walter; Shen, Xiaotao; Shendure, Jay; Shephard, Holly; Shi, Lingyan; Shi, Tujin; Shin, Dong-Guk; Shirey, Bill; Sibilla, Max; Silber, Michal; Silverstein, Jonathan; Simmel, Derek; Simmons, Alan; Singhal, Dhruv; Sivajothi, Santhosh; Smits, Thomas; Soncin, Francesca; Song, Qi; Stanley, Valentina; Stuart, Tim; Su, Hanquan; Su, Pei; Sun, Xin; Surrette, Christine; Swahn, Hannah; Tan, Kai; Teichmann, Sarah; Tejomay, Abhiroop; Tellides, George; Thomas, Kathleen; Thomas, Tracey; Thompson, Marissa; Tian, Hua; Tideman, Leonoor; Trapnell, Cole; Tsai, Albert G.; Tsai, Chia-Feng; Tsai, Leo; Tsui, Elizabeth; Tsui, Tina; Tung, Jason; Turner, Morgan; Uranic, Jackie; Vaishnav, Eeshit Dhaval; Varra, Sricharan Reddy; Vaskivskyi, Vasyl; Velickovic, Dusan; Velickovic, Marija; Verheyden, Jamie; Waldrip, Jessica; Wallace, Douglas; Wan, Xueyi; Wang, Allen; Wang, Fusheng; Wang, Meng; Wang, Shuoshuo; Wang, Xuefei; Wasserfall, Clive; Wayne, Leonard; Webber, James; Weber, Griffin M.; Wei, Bei; Wei, Jian-Jun; Weimer, Annika; Welling, Joel; Wen, Xingzhao; Wen, Zishen; Williams, MacKenzie; Winfree, Seth; Winograd, Nicholas; Woodard, Abashai; Wright, Devin; Wu, Fan; Wu, Pei-Hsun; Wu, Qiuyang; Wu, Xiaodong; Xing, Yi; Xu, Tiangyang; Yang, Manxi; Yang, Mingyu; Yap, Joseph; Ye, Dong Hye; Yin, Peng; Yuan, Zhou; Yun, Chi (Jina); Zahraei, Ali; Zemaitis, Kevin; Zhang, Bo; Zhang, Caibin; Zhang, Chenyu; Zhang, Chi; Zhang, Kun; Zhang, Shiping; Zhang, Ted; Zhang, Yida; Zhao, Bingqing; Zhao, Wenxin; Zheng, Jia Wen; Zhong, Sheng; Zhu, Bokai; Zhu, Chenchen; Zhu, Diming; Zhu, Quan; Zhu, Ying Share Save
Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology Bai, Yunhao; Zhu, Bokai; Oliveria, John-Paul; Cannon, Bryan J.; Feyaerts, Dorien; Bosse, Marc; Vijayaragavan, Kausalia; Greenwald, Noah F.; Phillips, Darci; Schuerch, Christian M.; Naik, Samuel M.; Ganio, Edward A.; Gaudilliere, Brice; Rodig, Scott J.; Miller, Michael B.; Angelo, Michael; Bendall, Sean C.; Rovira-Clave, Xavier; Nolan, Garry P.; Jiang, Sizun Share Save
CLINICAL RESPONSE TO THE PDGFRA/KIT INHIBITOR AVAPRITINIB IN PEDIATRIC AND YOUNG ADULT HIGH-GRADE GLIOMA PATIENTS WITH H3K27M OR PDGFRA GENOMIC ALTERATIONS Trissal, Maria; Mayr, Lisa; Schwark, Kallen; LaBelle, Jenna; Kong, Seongbae; Furtner, Julia; Weiler-Wichtl, Liesa; Supko, Jeffrey; Rozowsky, Jacob; Hack, Olivia; Groves, Andrew; Marques, Joana; Leiss, Ulrike; Rosenmayr, Verena; Dubois, Frank; Greenwald, Noah F.; Madlener, Sibylle; Guntner, Armin Sebastian; Palova, Hana; Stepien, Natalia; Lotsch-Gojo, Daniela; Dorfer, Christian; Dieckmann, Karen; Peyrl, Andreas; Azizi, Amadeo A.; Baumgartner, Alicia; Slaby, Ondrej; Pokorna, Petra; Bandopadhayay, Pratiti; Beroukhim, Rameen; Ligon, Keith L.; Kramm, Christof M.; Bronsema, Annika; Bailey, Simon; Stucklin, Ana Guerreiro; Mueller, Sabine Mueller; Jones, David T. W.; Jager, Natalie; Mullauer, Leonhard; Haberler, Christine; Kumar-Sinha, Chandan; Chinnaiyan, Arul; Mody, Rajen; Sterba, Jaroslav; Skrypek, Mary; Martinez, Nina; Bowers, Daniel C.; Koschmann, Carl Koschmann; Gojo, Johannes; Filbin, Mariella Share Save
Clinical response to the PDGFRα inhibitor avapritinib in high-grade glioma patients Mayr, Lisa; Trissal, Maria; Schwark, Kallen; Labelle, Jenna; Groves, Andrew; Furtner-Srajer, Julia; Supko, Jeffrey; Weiler-Wichtl, Liesa; Hack, Olivia; Rozowsky, Jacob; Marques, Joana G.; Pandatharatna, Eshini; Leiss, Ulrike; Rosenmayr, Verena; Dubois, Frank; Greenwald, Noah F.; Madlener, Sibylle; Guntner, Armin S.; Palova, Hana; Stepien, Natalia; Lotsch-Gojo, Daniela; Dorfer, Christian; Dieckmann, Karin; Peyrl, Andreas; Azizi, Amedeo A.; Baumgartner, Alicia; Slaby, Ondrej; Pokorna, Petra; Bandopadhayay, Pratiti; Beroukhim, Rameen; Ligon, Keith; Kramm, Christof; Bronsema, Annika; Bailey, Simon; Stucklin, Ana Guerreiro; Mueller, Sabine; Jones, David T.; Jager, Natalie; Sterba, Jaroslav; Mullauer, Leonhard; Haberler, Christine; Kumar-Sinha, Chandan; Chinnaiyan, Arul; Mody, Rajen; Skrypek, Mary; Martinez, Nina; Bowers, Daniel C.; Koschmann, Carl; Gojo, Johannes; Filbin, Mariella Share Save
Single-cell spatial proteomic imaging for human neuropathology Vijayaragavan, Kausalia; Cannon, Bryan J.; Tebaykin, Dmitry; Bosse, Marc; Baranski, Alex; Oliveria, Jp; Bukhari, Syed A.; Mrdjen, Dunja; Corces, M. Ryan; McCaffrey, Erin F.; Greenwald, Noah F.; Sigal, Yari; Marquez, Diana; Khair, Zumana; Bruce, Trevor; Goldston, Mako; Bharadwaj, Anusha; Montine, Kathleen S.; Angelo, R. Michael; Montine, Thomas J.; Bendall, Sean C. Share Save
Structural variants shape driver combinations and outcomes in pediatric high-grade glioma Dubois, Frank P. B.; Shapira, Ofer; Greenwald, Noah F.; Zack, Travis; Wala, Jeremiah; Tsai, Jessica W.; Crane, Alexander; Baguette, Audrey; Hadjadj, Djihad; Harutyunyan, Ashot S.; Kumar, Kiran H.; Blattner-Johnson, Mirjam; Vogelzang, Jayne; Sousa, Cecilia; Kang, Kyung Shin; Sinai, Claire; Wang, Dayle K.; Khadka, Prasidda; Lewis, Kathleen; Nguyen, Lan; Malkin, Hayley; Ho, Patricia; O'Rourke, Ryan; Zhang, Shu; Gold, Rose; Deng, Davy; Serrano, Jonathan; Snuderl, Matija; Jones, Chris; Wright, Karen D.; Chi, Susan N.; Grill, Jacques; Kleinman, Claudia L.; Goumnerova, Liliana C.; Jabado, Nada; Jones, David T. W.; Kieran, Mark W.; Ligon, Keith L.; Beroukhim, Rameen; Bandopadhayay, Pratiti Share Save
Combined protein and nucleic acid imaging reveals virus-dependent B cell and macrophage immunosuppression of tissue microenvironments Jiang, Sizun; Chan, Chi Ngai; Rovira-Clave, Xavier; Chen, Han; Bai, Yunhao; Zhu, Bokai; McCaffrey, Erin; Greenwald, Noah F.; Liu, Candace; Barlow, Graham L.; Weirather, Jason L.; Oliveria, John Paul; Nakayama, Tsuguhisa; Lee, Ivan T.; Matter, Matthias S.; Carlisle, Anne E.; Philips, Darci; Vazquez, Gustavo; Mukherjee, Nilanjan; Busman-Sahay, Kathleen; Nekorchuk, Michael; Terry, Margaret; Younger, Skyler; Bosse, Marc; Demeter, Janos; Rodig, Scott J.; Tzankov, Alexandar; Goltsev, Yury; McIlwain, David Robert; Angelo, Michael; Estes, Jacob D.; Nolan, Garry P. Share Save
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