Fangqing Zhao - Publications, H-index & Citations

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Fangqing Zhao

chinese academy of sciences

65H-index

270Paper Count

2.1WCitation Count

Published Papers 138

Publication Date

Genomic landscape of the human vaginal microbiome is linked to host genetics and population of origin

Nature Genetics

IF29

2026-06-11

OAAI

Zhuye Jie; Weiting Liang; Qiuxia Ding; Xiaomin Liu; Yunhong Zhang; Na Chen; Shenghui Li; Xin Tong; Hongqin Gao; Ruike Lu; Xincheng Huang; Ruochun Guo; Junhong Chen; Jie Zhu; Zhe Zhang; Na Liu; Zhangwei Xie; Xiaman Wang; Le Qi; Yumei Li; Liang Xiao; Shaoqiao Zhang; Xin Jin; Xun Xu; Huanming Yang; Jian Wang; Fangqing Zhao; Huijie Jia; Karsten Kristiansen; Tao Zhang; Lilan Hao; Lan Zhu; Chen Chen

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Comprehensive mapping of RNA modification dynamics and crosstalk via deep learning and nanopore direct RNA-sequencing

Nature Communications

IF15.7

2026-01-14

OAAI

Han Dong; Yongsheng Gao; Zhengyi Cai; Yi Li; Xing Li; Fangqing Zhao; Jinyang Zhang

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AI for biology: Catalyzing interdisciplinary innovation to unravel life’s complexity and address biomedical challenges

Fundamental Research

IF6.3

2025-10-15

OAAI

Xiu-Jie Wang; Fangqing Zhao; Qiangfeng Cliff Zhang; Hong-Liang Zhang

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Shaping the future of probiotics, live biotherapeutic products, and fecal microbiota transplantation: 30 scientific recommendations from the CHINAGUT Conference

iMeta

IF33.2

2025-10-02

OAAI

Weihong Wang; Nan Bu; Hailong Cao; Ning Chen; Wei Chen; Lei Cheng; Bota Cui; Lei Dai; Huiying Gao; Meng Guo; Xingxiang He; Jia Hu; Changtao Jiang; Xianzhi Jiang; Jingnan Li; Ping Li; Wei Li; Weiwei Liao; Hongwei Liu; Jingmei Liu; Ling Liu; Shuangjiang Liu; Xingyin Liu; Muhan Lv; Yonghui Ma; Chaoxin Man; Zheshun Pi; Qian Ren; Lixuan Sang; Zhihong Sun; Huayi Suo; Yan Tan; Wanyin Tao; Guangqiang Wang; Jun Wang; Liangjing Wang; Xin Wang; Xin Wang; Ye Wang; Kaichun Wu; Rina Wu; Zhen Wu; Xiang Xiao; Bin Xiang; Song Yang; Huaxi Yi; Honho Yu; Jun Yu; Yue Zeng; Huihong Zhai; Qixiao Zhai; Chenhong Zhang; Guohua Zhang; Jiachao Zhang; Wenyi Zhang; Fangqing Zhao; Liang Zhao; Hongwei Zhou; Li Zhu; Canhui Lan; Heping Zhang; Shu Zhu; Faming Zhang

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Detecting and quantifying circular RNAs in terabyte-scale RNA-seq datasets with CIRI3

Nature Biotechnology

IF41.7

2025-10-01

OAAI

Xin Zheng; Jinyang Zhang; Lipu Song; Xiang Jennie Li; Fangqing Zhao; Yuan Gao

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miR-148a promotes the expression of multiple alcohol dehydrogenase genes by activating an ADH4 enhancer element

International Journal of Biological Macromolecules

IF8.5

2025-09-30

PREAI

Zhe Huang; Shuyue Zhou; Jing Wang; Lijie Wang; Fangqing Zhao; Xuan Niu; Yisheng Fu; Qingkun Wang; Shuwen Li; Xinxin Gu; Jiao Luo

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Genome-resolved metagenomics reveals microbiome diversity across 48 tick species

Nature Microbiology

IF19.4

2025-09-23

OAAI

Li-Feng Du; Wenyu Shi; Xiao-Ming Cui; Huimin Fan; Jia-Fu Jiang; Cai Bian; Run-Ze Ye; Qian Wang; Ming-Zhu Zhang; Ting-Ting Yuan; Luo-Yuan Xia; Xiang-Dong Ruan; Qiao-Cheng Chang; Chun-Hong Du; Teng-Cheng Que; Xin Wang; Xiao-Hu Han; Tian-Ci Yang; Bao-Gui Jiang; Jian-Ying Chen; Xiao-Run Wang; Liang-Fei Tan; Yi-Wen Liu; Liang-Li Deng; Yan Liu; Yan Zhu; Yu-Sheng Pan; Ning Wang; Zhe-Tao Lin; Lian-Feng Li; Cheng Li; Shi-Jing Shen; Ya-Ting Liu; Di Tian; Xiao-Yu Han; Juan Wang; Yi-Fei Wang; Wan-Ying Gao; Yu-Yu Li; Tao Xiong; Tian-Hong Wang; Xiao-Yu Shi; Dai-Yun Zhu; Jin-Guo Zhu; Chong-Cai Wang; Wen-Qiang Shi; Lin Zhan; Zhi-Hong Liu; Dan Feng; Lin Zhao; Yi Sun; Jinfeng Wang; Na Jia; Fangqing Zhao; Wu-Chun Cao

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The evolution and causality of global bauxite flow since the 21st century: Based on the resource flow field model

Journal of Transport Geography

IF6.3

2025-06-26

PREAI

Qiang Fu; Qi Liu; Yunting Song; Jiajie Wu; Fangqing Zhao; Ruijia Zhao; Lei Wang

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Segatella copri and gut microbial ammonia metabolism contribute to chronic kidney disease pathogenesis

Nature Microbiology

IF19.4

2025-06-24

PREAI

Shuchun Lin; Zhonghan Sun; Xinna Zhu; Mengjing Wang; Qian Zhang; Jing Qian; Hui Zhang; Zhendong Mei; Yanni Pu; Mengmeng Kong; Peifeng Guo; Xiaofeng Zhou; Jin Li; Xuehui Sun; Liang Ma; Xueli Zhang; Fangqing Zhao; Jing Nie; Shangyu Hong; Jing Chen; Xiaofeng Wang; Xiao Li; Yan Zheng

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Circular RNA discovery with emerging sequencing and deep learning technologies

NATURE GENETICS

IF0

2025-04-17

PREAI

Zhang, Jinyang; Zhao, Fangqing

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Decoding Spatial Complexity of Diverse RNA Species in Archival Tissues

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2024-12-18

OAAI

Zhu, JJ; Zhao, FQ

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The evolving landscape of spatial proteomics technologies in the AI age

Fundamental Research

IF6.3

2024-12-04

OAAI

Beiyu Hu; Junjie Zhu; Fangqing Zhao

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Real-time and programmable transcriptome sequencing with PROFIT-seq

NATURE CELL BIOLOGY

IF19.1

2024-10-23

OAAI

Zhang, Jinyang; Hou, Lingling; Ma, Lianjun; Cai, Zhengyi; Ye, Shujun; Liu, Yang; Ji, Peifeng; Zuo, Zhenqiang; Zhao, Fangqing

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Exploring the frontier of microbiome biomarker discovery with artificial intelligence

NATIONAL SCIENCE REVIEW

IF17.1

2024-09-13

OAAI

Xiao, Liwen; Zhao, Fangqing

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Custom microfluidic chip design enables cost-effective three-dimensional spatiotemporal transcriptomics with a wide field of view

NATURE GENETICS

IF31.8

2024-09-10

OAAI

Zhu, Junjie; Pang, Kun; Hu, Beiyu; He, Ruiqiao; Wang, Ning; Jiang, Zewen; Ji, Peifeng; Zhao, Fangqing

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Cellular interactions and evolutionary origins of endosymbiotic relationships with ciliates

ISME JOURNAL

IF10

2024-06-25

OAAI

Song, Qi; Zhao, Fangqing; Hou, Lina; Miao, Miao

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Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization

MICROBIOME

IF12.7

2024-06-06

OAAI

Zhang, Ke; He, Chong; Wang, Lei; Suo, Langda; Guo, Mengmeng; Guo, Jiazhong; Zhang, Ting; Xu, Yangbin; Lei, Yu; Liu, Gongwei; Qian, Quan; Mao, Yunrui; Kalds, Peter; Wu, Yujiang; Cuoji, Awang; Yang, Yuxin; Brugger, Daniel; Gan, Shangquan; Wang, Meili; Wang, Xiaolong; Zhao, Fangqing; Chen, Yulin

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Exploring the landscape of symbiotic diversity and distribution in unicellular ciliated protists

MICROBIOME

IF12.7

2024-05-24

OAAI

Zhang, Bing; Xiao, Liwen; Lyu, Liping; Zhao, Fangqing; Miao, Miao

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Spatiotemporal patterns of the pregnancy microbiome and links to reproductive disorders

SCIENCE BULLETIN

IF21.1

2024-05-01

OAAI

Xiao, Liwen; Zhou, Tian; Zuo, Zhenqiang; Sun, Ningxia; Zhao, Fangqing

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Distinct molecular profiles drive multifaceted characteristics of colorectal cancer metastatic seeds

JOURNAL OF EXPERIMENTAL MEDICINE

IF10.6

2024-03-19

OAAI

Zhao, Yuanyuan; Zhang, Bing; Ma, Yiming; Guo, Mengmeng; Zhao, Fuqiang; Chen, Jianan; Wang, Bingzhi; Jin, Hua; Zhou, Fulai; Guan, Jiawei; Zhao, Qian; Liu, Qian; Wang, Hongying; Zhao, Fangqing; Wang, Xia

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Research Directions