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I

Irene Papatheodorou

wellcome genome campus

46H-index
160Paper Count
2.1WCitation Count
Published Papers 43
Publication Date
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A data-driven framework reconstructs the molecular continuum of human MASLD progression
errNature Metabolism
IF20.8
err2026-07-14
err0
errOAAI
errIoannis Kamzolas; Thodoris Koutsandreas; Charlie George Barker; Anna Vathrakokoili Pournara; Harry Weston; Naoto Fujiwara; Yujin Hoshida; Quentin M. Anstee; Michele Vacca; Irene Papatheodorou; Antonio Vidal-Puig; Evangelia Petsalaki
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errSave
scDenorm: a denormalisation tool for integrating single-cell transcriptomics data
errGigaScience
IF3.9
err2026-03-31
err0
errOAAI
errYin Huang; Anna Vathrakokili Pournara; Ying Ao; Ziliang Huang; Hui Zhang; Yongjian Zhang; Sheng Liu; Alvis Brazma; Irene Papatheodorou; Xinlu Yang; Ming Shi; Zhichao Miao
errShare
errSave
Crohn's lymphoid aggregates with endothelial clusters colocalise with submucosal fibrosis in fibrostenosing Crohn's disease
errThe Journal of Pathology
IF0
err2026-02-05
err0
errOAAI
errMichael Glinka; Gregory J Wickham; Francesca Nadalin; Kathryn J Kirkwood; Helen Caldwell; Mike Wicks; Bill Hill; Derek Houghton; Mehran Sharghi; Amirhosein Kefayat; Bernard Haggarty; Albert Burger; Richard A Baldock; David J Adams; Irene Papatheodorou; Peter Bankhead; Shahida Din; Mark J Arends
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errSave
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err2
errOAAI
errOlson, Andrew; Kumari, Sunita; Wei, Xuehong; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela karey; Kumar, Vivek; Van buren, Peter; Olson, Audra; Kim, Catherine; Braynen, Janeen; Zhang, Lifang; Dyer, Sarah; Alvarez-Jarreta, Jorge; Saraf, Shradha; Contreras-Moreira, Bruno; Naamati, Guy; Ernst, Christina; Papatheodorou, Irene; George, Nancy; Jaiswal, Pankaj; Naithani, Sushma; Gupta, Parul; Elser, Justin; D'eustachio, Peter; Assmann, Sarah M.; Ferrero-Serrano, Angel; Pasha, Asher; Provart, Nicholas; Gladman, Nicholas; Ware, Doreen
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errSave
Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err1
errOAAI
errMadrigal, Pedro; Thanki, Anil S.; Fexova, Silvie; Yu, Iris D.; Chatzigeorgiou, Arsenios; Zucchi, Ida; Marugan Calles, Jose C.; Vilmovsky, Liora; Khen, Amnon; Zhao, Lingyun; Erdos, Karoly; Kurri, Sandeep R.; Selvakumar, Sandeep; Kumbham, Upendra; Prakash, Ananth; Wang, Shengbo; Green, Andrew; Ribas, Carlos Eduardo; Sweeney, Blake; Alegbe, Tobi; Suveges, Daniel; Hemrom, Anmol; Gomez Gutierrez, David E.; Insua, Santiago; Jeffryes, Matt; Pearce, Matt; Basutkar, Prasad; Kaforou, Myrsini; Cunnington, Aubrey; Levin, Michael; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Roper, Katja; Brown, Nicholas H.; Hu, Yanhui; Perrimon, Norbert; Papatheodorou, Irene; Brazma, Alvis; Hermjakob, Henning; Harrison, Melissa; Ocana, David; Ochoa, David; McDonagh, Ellen M.; Bateman, Alex; Keane, Thomas; Vizcaino, Juan Antonio; Ernst, Christina
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errSave
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
errNature
IF48.5
err2025-09-24
err0
PREAI
errArnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang
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errSave
ScGOclust: leveraging gene ontology to find functionally analogous cell types between distant species
errBIOINFORMATICS
IF5.4
err2025-07-01
err1
errOAAI
errSong, Yuyao; Hu, Yanhui; Dow, Julian; Perrimon, Norbert; Papatheodorou, Irene
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errSave
Genetic and Pharmacological Inhibition of Metabotropic Glutamate Receptor Signalling Extends Lifespan in Drosophila
errAGING CELL
IF7.1
err2025-02-12
err0
errOAAI
errGuan, Cui; Otchere, Abigail; Laskovs, Mihails; Papatheodorou, Irene; Slack, Cathy
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errSave
Multi-omic lineage tracing predicts the transcriptional, epigenetic and genetic determinants of cancer evolution
errNATURE COMMUNICATIONS
IF15.7
err2024-09-01
err1
errOAAI
errNadalin, F.; Marzi, M. J.; Piscazzi, M. Pirra; Fuentes-Bravo, P.; Procaccia, S.; Climent, M.; Bonetti, P.; Rubolino, C.; Giuliani, B.; Papatheodorou, I.; Marioni, J. C.; Nicassio, F.
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errSave
Integrated Proteomics Analysis of Baseline Protein Expression in Pig Tissues
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-05-08
err3
errOAAI
errWang, Shengbo; Collins, Andrew; Prakash, Ananth; Fexova, Silvie; Papatheodorou, Irene; Jones, Andrew R.; Vizcaino, Juan Antonio
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errSave
Expression Atlas update: insights from sequencing data at both bulk and single cell level
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-22
err8
errOAAI
errGeorge, Nancy; Fexova, Silvie; Fuentes, Alfonso Munoz; Madrigal, Pedro; Bi, Yalan; Iqbal, Haider; Kumbham, Upendra; Nolte, Nadja Francesca; Zhao, Lingyun; Thanki, Anil S.; Yu, Iris D.; Marugan Calles, Jose C.; Erdos, Karoly; Vilmovsky, Liora; Kurri, Sandeep R.; Vathrakokoili-Pournara, Anna; Osumi-Sutherland, David; Prakash, Ananth; Wang, Shengbo; Tello-Ruiz, Marcela K.; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Hu, Yanhui; Brown, Nick; Perrimon, Norbert; Vizcaino, Juan Antonio; Burdett, Tony; Teichmann, Sarah; Brazma, Alvis; Papatheodorou, Irene
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errSave
Benchmarking strategies for cross-species integration of single-cell RNA sequencing data
errNATURE COMMUNICATIONS
IF15.7
err2023-10-14
err20
errOAAI
errSong, Yuyao; Miao, Zhichao; Brazma, Alvis; Papatheodorou, Irene
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errSave
The Promise of Single-Cell RNA Sequencing to Redefine the Understanding of Crohn's Disease Fibrosis Mechanisms
errJOURNAL OF CLINICAL MEDICINE
IF2.9
err2023-06-07
err1
errOAAI
errCampbell, Iona; Glinka, Michael; Shaban, Fadlo; Kirkwood, Kathryn J.; Nadalin, Francesca; Adams, David; Papatheodorou, Irene; Burger, Albert; Baldock, Richard A.; Arends, Mark J.; Din, Shahida
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errSave
SelectBCM tool: a batch evaluation framework to select the most appropriate batch-correction methods for bulk transcriptome analysis
errgenomics proteomics bioinformatics
IF2.8
err2023-03-03
err3
errOAAI
errMishra, Madhulika; Barck, Lucas; Moreno, Pablo; Heger, Guillaume; Song, Yuyao; Thornton, Janet M.; Papatheodorou, Irene
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errSave
Towards a clinically-based common coordinate framework for the human gut cell atlas: the gut models
errBMC MEDICAL INFORMATICS AND DECISION MAKING
IF3.8
err2023-02-15
err3
errOAAI
errBurger, Albert; Baldock, Richard A.; Adams, David J.; Din, Shahida; Papatheodorou, Irene; Glinka, Michael; Hill, Bill; Houghton, Derek; Sharghi, Mehran; Wicks, Michael; Arends, Mark J.
errShare
errSave
Integrated View of Baseline Protein Expression in Human Tissues
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2022-12-28
err11
errOAAI
errPrakash, Ananth; Garcia-Seisdedos, David; Wang, Shengbo; Kundu, Deepti Jaiswal; Collins, Andrew; George, Nancy; Moreno, Pablo; Papatheodorou, Irene; Jones, Andrew R.; Vizcaino, Juan Antonio
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errSave
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-12-07
err28
errOAAI
errThakur, Matthew; Bateman, Alex; Brooksbank, Cath; Freeberg, Mallory; Harrison, Melissa; Hartley, Matthew; Keane, Thomas; Kleywegt, Gerard; Leach, Andrew; Levchenko, Mariia; Morgan, Sarah; McDonagh, Ellen M.; Orchard, Sandra; Papatheodorou, Irene; Velankar, Sameer; Vizcaino, Juan Antonio; Witham, Rick; Zdrazil, Barbara; McEntyre, Johanna
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errSave
Toward a data infrastructure for the Plant Cell Atlas
errPLANT PHYSIOLOGY
IF6.9
err2022-10-06
err7
errOAAI
errFahlgren, Noah; Kapoor, Muskan; Yordanova, Galabina; Papatheodorou, Irene; Waese, Jamie; Cole, Benjamin; Harrison, Peter; Ware, Doreen; Tickle, Timothy; Paten, Benedict; Burdett, Tony; Elsik, Christine G.; Tuggle, Christopher K.; Provart, Nicholas J.
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errSave
The discovAIR project: a roadmap towards the Human Lung Cell Atlas
errEUROPEAN RESPIRATORY JOURNAL
IF21
err2022-01-27
err14
errOAAI
errLuecken, Malte D.; Zaragosi, Laure-Emmanuelle; Madissoon, Elo; Sikkema, Lisa; Firsova, Alexandra B.; De Domenico, Elena; Kuemmerle, Louis; Saglam, Adem; Berg, Marijn; Gay, Aurore C. A.; Schniering, Janine; Mayr, Christoph H.; Abalo, Xesus M.; Larsson, Ludvig; Sountoulidis, Alexandros; Teichmann, Sarah A.; Van Eunen, Karen; Koppelman, Gerard H.; Saeb-Parsy, Kourosh; Leroy, Sylvie; Powell, Pippa; Sarkans, Ugis; Timens, Wim; Lundeberg, Joakim; van den Berge, Maarten; Nilsson, Mats; Horvath, Peter; Denning, Jessica; Papatheodorou, Irene; Schultze, Joachim L.; Schiller, Herbert B.; Barbry, Pascal; Petoukhov, Ilya; Misharin, Alexander V.; Adcock, Ian M.; von Papen, Michael; Theis, Fabian J.; Samakovlis, Christos; Meyer, Kerstin B.; Nawijn, Martijn C.
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Single-Cell Analysis Reveals the Immune Characteristics of Myeloid Cells and Memory T Cells in Recovered COVID-19 Patients With Different Severities
errFRONTIERS IN IMMUNOLOGY
IF5.9
err2022-01-03
err19
errOAAI
errLi, Xu; Garg, Manik; Jia, Tingting; Liao, Qijun; Yuan, Lifang; Li, Mao; Wu, Zhengyu; Wu, Weihua; Bi, Yalan; George, Nancy; Papatheodorou, Irene; Brazma, Alvis; Luo, Huanle; Fang, Shisong; Miao, Zhichao; Shu, Yuelong
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Research Directions

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Co-authors
Cooperation Journals
D
David Haussler
H-index: 175 · Papers: 720
P
Paul Flicek
H-index: 167 · Papers: 522
J
John N. Weinstein
H-index: 163 · Papers: 987
N
Norbert Perrimon
H-index: 154 · Papers: 867
P
Peter J. Park
H-index: 145 · Papers: 810
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