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Standalone single- and bi-layered human skin 3D models supported by recombinant silk feature native spatial organization Gkouma, Savvini; Bhalla, Nayanika; Frapard, Solene; Jonsson, Alexander; Gurbuz, Hakan; Dogan, Asli Aybike; Giacomello, Stefania; Duvfa, Martin; Stahl, Patrik L.; Widhe, Mona; Hedhammar, My Share Save
Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis Franzen, Lovisa; Lindvall, Martina Olsson; Huhn, Michael; Ptasinski, Victoria; Setyo, Laura; Keith, Benjamin P.; Collin, Astrid; Oag, Steven; Volckaert, Thomas; Borde, Annika; Lundeberg, Joakim; Lindgren, Julia; Belfield, Graham; Jackson, Sonya; Ollerstam, Anna; Stamou, Marianna; Stahl, Patrik L.; Hornberg, Jorrit J. Share Save
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An integrated single cell and spatial transcriptomic map of human white adipose tissue Massier, Lucas; Jalkanen, Jutta; Elmastas, Merve; Zhong, Jiawei; Wang, Tongtong; Nankam, Pamela A. Nono; Frendo-Cumbo, Scott; Backdahl, Jesper; Subramanian, Narmadha; Sekine, Takuya; Kerr, Alastair G.; Tseng, Ben T. P.; Laurencikiene, Jurga; Buggert, Marcus; Lourda, Magda; Kublickiene, Karolina; Bhalla, Nayanika; Andersson, Alma; Valsesia, Armand; Astrup, Arne; Blaak, Ellen E.; Stahl, Patrik L.; Viguerie, Nathalie; Langin, Dominique; Wolfrum, Christian; Blueher, Matthias; Ryden, Mikael; Mejhert, Niklas Share Save
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Integrated single cell and spatial transcriptomics reveal autoreactive differentiated B cells in joints of early rheumatoid arthritis Hardt, Uta; Carlberg, Konstantin; af Klint, Erik; Sahlstrom, Peter; Larsson, Ludvig; van Vollenhoven, Annika; Machado, Susana Hernandez; Israelsson, Lena; Amara, Khaled; Chemin, Karine; Korotkova, Marina; Hedestam, Gunilla B. Karlsson; Catrina, Anca, I; Teichmann, Sarah A.; Stahl, Patrik L.; Malmstrom, Vivianne Share Save
Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium Vickovic, Sanja; Schapiro, Denis; Carlberg, Konstantin; Lotstedt, Britta; Larsson, Ludvig; Hildebrandt, Franziska; Korotkova, Marina; Hensvold, Aase H.; Catrina, Anca, I; Sorger, Peter K.; Malmstrom, Vivianne; Regev, Aviv; Stahl, Patrik L. Share Save
Spatial mapping reveals human adipocyte subpopulations with distinct sensitivities to insulin (vol 33, pg 1869, 2021) Backdahl, Jesper; Franzen, Lovisa; Massier, Lucas; Li, Qian; Jalkanen, Jutta; Gao, Hui; Andersson, Alma; Bhalla, Nayanika; Thorell, Anders; Ryden, Mikael; Stahl, Patrik L.; Mejhert, Niklas Share Save
Divergent clonal differentiation trajectories establish CD8+ memory T cell heterogeneity during acute viral infections in humans Mold, Jeff E.; Modolo, Laurent; Hard, Joanna; Zamboni, Margherita; Larsson, Anton J. M.; Stenudd, Moa; Eriksson, Carl-Johan; Durif, Ghislain; Stahl, Patrik L.; Borgstrom, Erik; Picelli, Simone; Reinius, Bjorn; Sandberg, Rickard; Reu, Pedro; Talavera-Lopez, Carlos; Andersson, Bjorn; Blom, Kim; Sandberg, Johan K.; Picard, Franck; Michaelsson, Jakob; Frisen, Jonas Share Save
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High-definition spatial transcriptomics for in situ tissue profiling Vickovic, Sanja; Eraslan, Gokcen; Salmen, Fredrik; Klughammer, Johanna; Stenbeck, Linnea; Schapiro, Denis; Aijo, Tarmo; Bonneau, Richard; Bergenstrahle, Ludvig; Navarro, Jose Fernandez; Gould, Joshua; Griffin, Gabriel K.; Borg, Ake; Ronaghi, Mostafa; Frisen, Jonas; Lundeberg, Joakim; Regev, Aviv; Stahl, Patrik L. Share Save
Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing Hard, Joanna; Al Hakim, Ezeddin; Kindblom, Marie; Bjorklund, Asa K.; Sennblad, Bengt; Demirci, Ilke; Paterlini, Marta; Reu, Pedro; Borgstrom, Erik; Stahl, Patrik L.; Michaelsson, Jakob; Mold, Jeff E.; Frisen, Jonas Share Save
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Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity Berglund, Emelie; Maaskola, Jonas; Schultz, Niklas; Friedrich, Stefanie; Marklund, Maja; Bergenstrahle, Joseph; Tarish, Firas; Tanoglidi, Anna; Vickovic, Sanja; Larsson, Ludvig; Salmen, Fredrik; Ogris, Christoph; Wallenborg, Karolina; Lagergren, Jens; Stahl, Patrik; Sonnhammer, Erik; Helleday, Thomas; Lundeberg, Joakim Share Save
Spatial detection of fetal marker genes expressed at low level in adult human heart tissue Asp, Michaela; Salmen, Fredrik; Stahl, Patrik L.; Vickovic, Sanja; Felldin, Ulrika; Lofling, Marie; Navarro, Jose Fernandez; Maaskola, Jonas; Eriksson, Maria J.; Persson, Bengt; Corbascio, Matthias; Persson, Hans; Linde, Cecilia; Lundeberg, Joakim Share Save
Spatially resolved transcriptome profiling in model plant species Giacomello, Stefania; Salmen, Fredrik; Terebieniec, Barbara K.; Vickovic, Sanja; Navarro, Jose Fernandez; Alexeyenko, Andrey; Reimegard, Johan; McKee, Lauren S.; Mannapperuma, Chanaka; Bulone, Vincent; Stahl, Patrik L.; Sundstrom, Jens F.; Street, Nathaniel R.; Lundeberg, Joakim Share Save
An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries(vol 6, 37137, 2016) Jemt, Anders; Salmen, Fredrik; Lundmark, Anna m; Mollbrink, Annelie; Navarro, Jose Fernandez; Stahl, Patrik L.; Yucel-Lindberg, Tuelay; Lundeberg, Joakim Share Save
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