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D

Daniel R. Berger

Harvard University

27H-index
99Paper Count
6.9KCitation Count
Published Papers 15
Publication Date
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Connectomic evidence that ordered activity drives neuromuscular network formation
errNature Neuroscience
IF20
err2026-06-30
err0
errOAAI
errYaron Meirovitch; Kai Kang; Ryan W. Draft; Elisa C. Pavarino; Maria Fernanda Henao Echeverri; Fuming Yang; Stephen G. Turney; Daniel R. Berger; Adi Peleg; Marta Montero-Crespo; Yuelong Wu; Richard L. Schalek; Ju Lu; Jean Livet; Juan-Carlos Tapia; Jeff W. Lichtman
errShare
errSave
Probing molecular diversity and ultrastructure of brain cells with fluorescent aptamers
errNature Communications
IF15.7
err2026-04-27
err0
errOAAI
errXiaotang Lu; Yuelong Wu; Peter H. Li; Tao Fang; Richard L. Schalek; Yaxin Su; Daniel R. Berger; Jeffery D. Carter; Sean Lynch; Daniel J. Schneider; Shashi Gupta; Viren Jain; Nebojsa Janjic; Jeff W. Lichtman
errShare
errSave
SmartEM: machine learning-guided electron microscopy
errNature Methods
IF32.1
err2025-12-29
err0
PREAI
errYaron Meirovitch; Ishaan Singh Chandok; Core Francisco Park; Pavel Potocek; Lu Mi; Shashata Sawmya; Yicong Li; Thomas L. Athey; Vladislav Susoy; Neha Karlupia; Yuelong Wu; Daniel R. Berger; Richard Schalek; Caitlyn A. Bishop; Daniel Xenes; Hannah Martinez; Jordan Matelsky; Brock A. Wester; Hanspeter Pfister; Remco Schoenmakers; Maurice Peemen; Jeff W. Lichtman; Aravinthan D. T. Samuel; Nir Shavit
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errSave
Frenet-Serret Frame-Based Decomposition for Part Segmentation of 3-D Curvilinear Structures
errIEEE TRANSACTIONS ON MEDICAL IMAGING
IF9.8
err2025-12-01
err0
PREAI
errLeslie Gu, Shixuan; Adhinarta, Jason Ken; Bessmeltsev, Mikhail; Yang, Jiancheng; Jessica Zhang, Yongjie; Yin, Wenjie; Berger, Daniel; Lichtman, Jeff W.; Pfister, Hanspeter; Wei, Donglai
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errSave
Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning
errNEUROIMAGE
IF4.5
err2025-06-01
err0
errOAAI
errTian, Qiyuan; Ngamsombat, Chanon; Lee, Hong-Hsi; Berger, Daniel R.; Wu, Yuelong; Fan, Qiuyun; Bilgic, Berkin; Li, Ziyu; Novikov, Dmitry S.; Fieremans, Els; Rosen, Bruce R.; Lichtman, Jeff W.; Huang, Susie Y.
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errSave
Multiplexed volumetric CLEM enabled by scFvs provides insights into the cytology of cerebellar cortex
errNATURE COMMUNICATIONS
IF15.7
err2024-08-05
err1
errOAAI
errHan, Xiaomeng; Lu, Xiaotang; Li, Peter H.; Wang, Shuohong; Schalek, Richard; Meirovitch, Yaron; Lin, Zudi; Adhinarta, Jason; Murray, Karl D.; Macniven, Leah M.; Berger, Daniel R.; Wu, Yuelong; Fang, Tao; Meral, Elif Sevde; Asraf, Shadnan; Ploegh, Hidde; Pfister, Hanspeter; Wei, Donglai; Jain, Viren; Trimmer, James S.; Lichtman, Jeff W.
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errSave
Mapping of neuronal and glial primary cilia contactome and connectome in the human cerebral cortex
errNEURON
IF15
err2024-01-01
err10
PREAI
errWu, Jun Yao; Cho, Su-Ji; Descant, Katherine; Li, Peter H.; Shapson-Coe, Alexander; Januszewski, Michal; Berger, Daniel R.; Meyer, Cailyn; Casingal, Cristine; Huda, Ariba; Liu, Jiaqi; Ghashghaei, Tina; Brenman, Mikayla; Jiang, Michelle; Scarborough, Joseph; Pope, Art; Jain, Viren; Stein, Jason L.; Guo, Jiami; Yasuda, Ryohei; Lichtman, Jeff W.; Anton, E. S.
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errSave
Multi-layered maps of neuropil with segmentation-guided contrastive learning
errNATURE METHODS
IF32.1
err2023-11-20
err7
errOAAI
errDorkenwald, Sven; Li, Peter H.; Januszewski, Michal; Berger, Daniel R.; Maitin-Shepard, Jeremy; Bodor, Agnes L.; Collman, Forrest; Schneider-Mizell, Casey M.; da Costa, Nuno Macarico; Lichtman, Jeff W.; Jain, Viren
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errSave
Connectomics of the Octopus vulgaris vertical lobe provides insight into conserved and novel principles of a memory acquisition network
errELIFE
IF0
err2023-07-06
err7
errOAAI
errBidel, Flavie; Meirovitch, Yaron; Schalek, Richard Lee; Lu, Xiaotang; Pavarino, Elisa Catherine; Yang, Fuming; Peleg, Adi; Wu, Yuelong; Shomrat, Tal; Berger, Daniel Raimund; Shaked, Adi; Lichtman, Jeff William; Hochner, Binyamin
errShare
errSave
Post-embryonic remodeling of the C. elegans motor circuit
errCURRENT BIOLOGY
IF7.5
err2022-11-01
err9
errOAAI
errMulcahy, Ben; Witvliet, Daniel K.; Mitchell, James; Schalek, Richard; Berger, Daniel R.; Wu, Yuelong; Holmyard, Doug; Lu, Yangning; Ahamed, Tosif; Samuel, Aravinthan D. T.; Chisholm, Andrew D.; Lichtman, Jeff W.; Zhen, Mei
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errSave
Individual Oligodendrocytes Show Bias for Inhibitory Axons in the Neocortex
errCELL REPORTS
IF6.9
err2019-06-01
err69
errOAAI
errZonouzi, Marzieh; Berger, Daniel; Jokhi, Vahbiz; Kedaigle, Amanda; Lichtman, Jeff; Arlotta, Paola
errShare
errSave
N6-Methyladenosine detected in RNA of testicular germ cell tumors is controlled by METTL3, ALKBH5, YTHDC1/F1/F2, and HNRNPC as writers, erasers, and readers
errANDROLOGY
IF3.4
err2019-03-23
err35
errOAAI
errNettersheim, D.; Berger, D.; Jostes, S.; Kristiansen, G.; Lochnit, G.; Schorle, H.
errShare
errSave
Nanobody immunostaining for correlated light and electron microscopy with preservation of ultrastructure
errNATURE METHODS
IF32.1
err2018-11-05
err80
errOAAI
errFang, Tao; Lu, Xiaotang; Berger, Daniel; Gmeiner, Christina; Cho, Julia; Schalek, Richard; Ploegh, Hidde; Lichtman, Jeff
errShare
errSave
VAST (Volume Annotation and Segmentation Tool): Efficient Manual and Semi-Automatic Labeling of Large 3D Image Stacks
errFRONTIERS IN NEURAL CIRCUITS
IF3
err2018-10-16
err137
errOAAI
errBerger, Daniel R.; Seung, H. Sebastian; Lichtman, Jeff W.
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errSave
Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits
errFRONTIERS IN NEURAL CIRCUITS
IF3
err2014-06-27
err203
errOAAI
errHayworth, Kenneth J.; Morgan, Josh L.; Schalek, Richard; Berger, Daniel R.; Hildebrand, David G. C.; Lichtman, Jeff W.
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
H
Hidde L. Ploegh
H-index: 148 · Papers: 927
B
Bruce R. Rosen
H-index: 147 · Papers: 742
G
Glen Kristiansen
H-index: 93 · Papers: 953
J
Jeff W. Lichtman
H-index: 86 · Papers: 359
H
Hanspeter Pfister
H-index: 83 · Papers: 676
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