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S

Stefan Peidli

European Molecular Biology Laboratory

10H-index
31Paper Count
3.7KCitation Count
Published Papers 11
Publication Date
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Pertpy: an end-to-end framework for perturbation analysis
errNature Methods
IF32.1
err2025-12-31
err0
errOAAI
errLukas Heumos; Yuge Ji; Lilly May; Tessa D. Green; Stefan Peidli; Xinyue Zhang; Xichen Wu; Johannes Ostner; Antonia Schumacher; Karin Hrovatin; Michaela Müller; Faye Chong; Gregor Sturm; Alejandro Tejada; Emma Dann; Mingze Dong; Gonçalo Pinto; Mojtaba Bahrami; Ilan Gold; Sergei Rybakov; Altana Namsaraeva; Amir Ali Moinfar; Zihe Zheng; Eljas Roellin; Isra Mekki; Chris Sander; Mohammad Lotfollahi; Herbert B. Schiller; Fabian J. Theis
errShare
errSave
A compendium of synthetic lethal gene pairs defined by extensive combinatorial pan-cancer CRISPR screening
errGenome Biology
IF9.4
err2025-10-03
err0
errOAAI
errVictoria Harle; Victoria Offord; Birkan Gökbağ; Lazaros Fotopoulos; Thomas Williams; Diana Alexander; Ishan Mehta; Nicola A. Thompson; Rebeca Olvera-León; Stefan Peidli; Vivek Iyer; Emanuel Gonçalves; Narod Kebabci; Barbara De Kegel; Joris van de Haar; Lang Li; Colm J. Ryan; David J. Adams
errShare
errSave
Quantifying reproducible multivariate differential expression in genetic perturbation screens
errNATURE GENETICS
IF0
err2025-04-30
err0
PREAI
errPeidli, Stefan
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errSave
The decomposition of perturbation modeling
errNATURE COMPUTATIONAL SCIENCE
IF18.3
err2024-10-14
err0
PREAI
errPeidli, Stefan
errShare
errSave
High-confidence calling of normal epithelial cells allows identification of a novel stem-like cell state in the colorectal cancer microenvironment
errINTERNATIONAL JOURNAL OF CANCER
IF4.7
err2024-07-19
err2
errOAAI
errWei, Tzu-Ting; Blanc, Eric; Peidli, Stefan; Bischoff, Philip; Trinks, Alexandra; Horst, David; Sers, Christine; Bluethgen, Nils; Beule, Dieter; Morkel, Markus; Obermayer, Benedikt
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errSave
Single-cell-resolved interspecies comparison shows a shared inflammatory axis and a dominant neutrophil-endothelial program in severe COVID-19
errCELL REPORTS
IF6.9
err2024-06-01
err1
errOAAI
errPeidli, Stefan; Nouailles, Geraldine; Wyler, Emanuel; Adler, Julia M.; Kunder, Sandra; Voss, Anne; Kazmierski, Julia; Pott, Fabian; Pennitz, Peter; Postmus, Dylan; Alves, Luiz Gustavo Teixeira; Goffinet, Christine; Gruber, Achim D.; Thgen, Nils Blu euro; Witzenrath, Martin; Trimpert, Jakob; Landthaler, Markus; Praktiknjo, Samantha D.
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errSave
scPerturb: harmonized single-cell perturbation data
errNATURE METHODS
IF32.1
err2024-01-26
err15
errOAAI
errPeidli, Stefan; Green, Tessa D.; Shen, Ciyue; Gross, Torsten; Min, Joseph; Garda, Samuele; Yuan, Bo; Schumacher, Linus J.; Taylor-King, Jake P.; Marks, Debora S.; Luna, Augustin; Bluethgen, Nils; Sander, Chris
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errSave
Modeling the effects of niche specific microenvironmental changes on patient-derived organoids
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errvon Schlichting, Jennifer; Peidli, Stefan; Morkel, Markus; Bluthgen, Nils; Simon, Leona
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errSave
Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics
errMOLECULAR THERAPY
IF12
err2022-05-01
err20
errOAAI
errWyler, Emanuel; Adler, Julia M.; Eschke, Kathrin; Alves, G. Teixeira; Peidli, Stefan; Pott, Fabian; Kazmierski, Julia; Michalick, Laura; Kershaw, Olivia; Bushe, Judith; Andreotti, Sandro; Pennitz, Peter; Abdelgawad, Azza; Postmus, Dylan; Goffinet, Christine; Kreye, Jakob; Reincke, S. Momsen; Pruess, Harald; Bluethgen, Nils; Gruber, Achim D.; Kuebler, Wolfgang M.; Witzenrath, Martin; Landthaler, Markus; Nouailles, Geraldine; Trimpert, Jakob
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errSave
Mitogen-activated protein kinase activity drives cell trajectories in colorectal cancer
errEMBO MOLECULAR MEDICINE
IF8.3
err2021-08-19
err63
errOAAI
errUhlitz, Florian; Bischoff, Philip; Peidli, Stefan; Sieber, Anja; Trinks, Alexandra; Luethen, Mareen; Obermayer, Benedikt; Blanc, Eric; Ruchiy, Yana; Sell, Thomas; Mamlouk, Soulafa; Arsie, Roberto; Wei, Tzu-Ting; Klotz-Noack, Kathleen; Schwarz, Roland F.; Sawitzki, Birgit; Kamphues, Carsten; Beule, Dieter; Landthaler, Markus; Sers, Christine; Horst, David; Bluethgen, Nils; Morkel, Markus
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errSave
Generalizing RNA velocity to transient cell states through dynamical modeling
errNATURE BIOTECHNOLOGY
IF41.7
err2020-08-03
err1.3K
errOAAI
errBergen, Volker; Lange, Marius; Peidli, Stefan; Wolf, F. Alexander; Theis, Fabian J.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
C
Chris Sander
H-index: 191 · Papers: 849
F
Fabian J. Theis
H-index: 125 · Papers: 1.1K
D
David J. Adams
H-index: 113 · Papers: 965
A
Achim D. Gruber
H-index: 71 · Papers: 501
W
Wolfgang M. Kuebler
H-index: 69 · Papers: 610
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