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N

Nathan R. Zemke

uc san diego

13H-index
51Paper Count
927Citation Count
Published Papers 17
Publication Date
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Single-cell analysis of the epigenome and 3D chromatin architecture in the human retina
errScience Advances
IF12.5
err2026-07-23
err0
errOAAI
errYing Yuan; Pooja Biswas; Nathan R. Zemke; Kelsey Dang; Yue Wu; Matteo D’Antonio; Yang Xie; Qian Yang; Keyi Dong; Pik Ki Lau; Daofeng Li; Chanrung Seng; Weronika Bartosik; Justin Buchanan; Lin Lin; Ryan Lancione; Kangli Wang; Seoyeon Lee; Zane Gibbs; Bing Yang; Joseph R. Ecker; Kelly Frazer; Ting Wang; Sebastian Preissl; Allen Wang; Radha Ayyagari; Bing Ren
errShare
errSave
Dose-dependent sensitivity of human three-dimensional chromatin to a heart disease–linked transcription factor
errScience
IF45.8
err2026-07-23
err0
PREAI
errZoe L. Grant; Shuzhen Kuang; Shu Zhang; Abraham J. Horrillo; Zhe Chen; Kavitha S. Rao; Cemre Celen; Vasumathi Kameswaran; Carine Joubran; Pik Ki Lau; Keyi Dong; Bing Yang; Weronika M. Bartosik; Nathan R. Zemke; Bing Ren; Deepak Srivastava; Irfan S. Kathiriya; Katherine S. Pollard; Benoit G. Bruneau
errShare
errSave
Epigenetic and 3D genome reprogramming during the aging of the human hippocampus
errScience
IF45.8
err2026-07-23
err0
PREAI
errNathan R. Zemke; Seoyeon Lee; Sainath Mamde; Bing Yang; Nicole Berchtold; B. Maximiliano Garduño; Hannah S. Indralingam; Weronika M. Bartosik; Pik Ki Lau; Keyi Dong; Emily Hsu; Amanda Yang; Yasmine Tani; Chumo Chen; Qiurui Zeng; Varun Ajith; Liqi Tong; Chanrung Seng; Daofeng Li; Ting Wang; Jingtian Zhou; Joseph R. Ecker; Christopher K. Glass; Carl W. Cotman; Xiangmin Xu; Bing Ren
errShare
errSave
Cell-type-specific transposon demethylation and TAD remodeling in aging mouse brain
errCell
IF42.5
err2026-03-11
err0
errOAAI
errQiurui Zeng; Wenliang Wang; Wei Tian; Amit Klein; Anna Bartlett; Hanqing Liu; Joseph R. Nery; Rosa G. Castanon; Julia Osteen; Nicholas D. Johnson; Wubin Ding; Huaming Chen; Jordan Altshul; Mia Kenworthy; Cynthia Valadon; William Owens; Zhanghao Wu; Maria Luisa Amaral; Nathan R. Zemke; Yuru Song
errShare
errSave
Single-cell multiomic human brain atlas reveals regulatory drivers of cortical regionality
errNature Communications
IF15.7
err2026-02-21
err0
errOAAI
errCarter R. Palmer; Jinghui Song; Bing Yang; Chien-Ju Chen; Dinh Diep; Kimberly Conklin; Nongluk Plongthongkum; Hannah S. Indralingam; Christine S. Liu; Joshua Kurtz; Qiwen Hu; Linnea Ransom; Anis Shahnaee; Annie Hiniker; Rebecca D. Hodge; C. Dirk Keene; Ed Lein; Peter Kharchenko; Nathan R. Zemke; Jerold Chun; Bing Ren; Kun Zhang
errShare
errSave
Multi-layered transcriptional control of glycogen metabolism coordinates thermogenic remodeling of white adipocytes in male mice
errNature Communications
IF15.7
err2025-12-16
err0
errOAAI
errHaipeng Fu; Seoyeon Lee; Nathan R. Zemke; Weiwei Fan; Yunqing Wang; James Garza; David Tin; Bryce Villao; Bichen Zhang; Xianda Ma; Jinyang Zhang; Tangran Dong; Yuyao Ren; Michael Downes; Ronald M. Evans; Bing Ren; Alan R. Saltiel
errShare
errSave
Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex
errCell Genomics
IF9
err2025-05-21
err0
errOAAI
errNelson J. Johansen; Niklas Kempynck; Nathan R. Zemke; Saroja Somasundaram; Seppe De Winter; Marcus Hooper; Deepanjali Dwivedi; Ruchi Lohia; Fabien Wehbe; Bocheng Li; Darina Abaffyová; Ethan J. Armand; Julie De Man; Eren Can Ekşi; Nikolai Hecker; Gert Hulselmans; Vasilis Konstantakos; David Mauduit; John K. Mich; Gabriele Partel; Trygve E. Bakken
errShare
errSave
Cell type-specific 3D-genome organization and transcription regulation in the brain
errSCIENCE ADVANCES
IF12.5
err2025-02-28
err3
errOAAI
errLiu, Shiwei; Wang, Cosmos Yuqi; Zheng, Pu; Jia, Bojing Blair; Zemke, Nathan R.; Park, Hannah L.; Ren, Bing; Zhuang, Xiaowei
errShare
errSave
Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues
errNATURE STRUCTURAL & MOLECULAR BIOLOGY
IF10.1
err2024-12-16
err0
errOAAI
errYu, Miao; Zemke, Nathan R.; Chen, Ziyin; Juric, Ivan; Hu, Rong; Raviram, Ramya; Abnousi, Armen; Fang, Rongxin; Zhang, Yanxiao; Gorkin, David U.; Li, Yang E.; Zhao, Yuan; Lee, Lindsay; Mishra, Shreya; Schmitt, Anthony D.; Qiu, Yunjiang; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Hu, Ming; Ren, Bing
errShare
errSave
Adenovirus small E1A directs activation of Alu transcription at YAP/TEAD- and AP-1-bound enhancers through interactions with the EP400 chromatin remodeler
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-07-16
err0
errOAAI
errCantarella, Simona; Vezzoli, Marco; Carnevali, Davide; Morselli, Marco; Zemke, Nathan R.; Montanini, Barbara; Daussy, Coralie F.; Wodrich, Harald; Teichmann, Martin; Pellegrini, Matteo; Berk, Arnold J.; Dieci, Giorgio; Ferrari, Roberto
errShare
errSave
Reduction of ZFX levels decreases histone H4 acetylation and increases Pol2 pausing at target promoters
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-05-10
err1
errOAAI
errHsu, Emily; Hutchison, Katherine; Liu, Yao; Nicolet, Charles M.; Schreiner, Shannon; Zemke, Nathan R.; Farnham, Peggy J.
errShare
errSave
A fast, scalable and versatile tool for analysis of single-cell omics data
errNATURE METHODS
IF32.1
err2024-01-08
err10
errOAAI
errZhang, Kai; Zemke, Nathan R.; Armand, Ethan J.; Ren, Bing
errShare
errSave
Adenovirus E1A binding to DCAF10 targets proteasomal degradation of RUVBL1/2 AAA+ ATPases required for quaternary assembly of multiprotein machines, innate immunity, and responses to metabolic stress
errJOURNAL OF VIROLOGY
IF3.8
err2023-12-21
err0
errOAAI
errZemke, Nathan R.; Hsu, Emily; Barshop, William D.; Sha, Jihui; Wohlschlegel, James A.; Berk, Arnold J.
errShare
errSave
Promoter-specific changes in initiation, elongation, and homeostasis of histone H3 acetylation during CBP/p300 inhibition
errELIFE
IF0
err2021-03-11
err24
errOAAI
errHsu, Emily; Zemke, Nathan R.; Berk, Arnold J.
errShare
errSave
The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-05-01
err33
errOAAI
errBhat, Kruttika; Saki, Mohammad; Vlashi, Erina; Cheng, Fei; Duhachek-Muggy, Sara; Alli, Claudia; Yu, Garrett; Medina, Paul; He, Ling; Damoiseaux, Robert; Pellegrini, Matteo; Zemke, Nathan R.; Nghiemphu, Phioanh Leia; Cloughesy, Timothy F.; Liau, Linda M.; Kornblum, Harley I.; Pajonk, Frank
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errSave
Adenovirus E1A Activation Domain Regulates H3 Acetylation Affecting Varied Steps in Transcription at Different Viral Promoters
errJOURNAL OF VIROLOGY
IF3.8
err2018-09-15
err18
errOAAI
errHsu, Emily; Pennella, Mario A.; Zemke, Nathan R.; Eng, Carol; Berk, Arnold J.
errShare
errSave
EGFR signaling activates S100 gene expression in HER2-positive breast cancer cells
errCANCER RESEARCH
IF16.6
err2018-07-01
err0
PREAI
errNava, Miguel; Zemke, Nathan R.; Berk, Arnie; Farias-Eisner, Robin; Vadgama, Jay; Wu, Yanyuan
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Ronald M. Evans
H-index: 211 · Papers: 924
C
Christopher K. Glass
H-index: 170 · Papers: 569
J
Joseph R. Ecker
H-index: 168 · Papers: 535
B
Bing Ren
H-index: 131 · Papers: 543
T
Timothy F. Cloughesy
H-index: 128 · Papers: 1.4K
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