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Uwe Ohler

Hudson Institute of Medical Research

67H-index
240Paper Count
1.9WCitation Count
Published Papers 105
Publication Date
Expanding the human proteome with microproteins and peptideins
errNature
IF48.5
err2026-05-01
err0
PREAI
errDeutsch, Eric W.; Kok, Leron W.; Mudge, Jonathan M.; Valls, Cristian F.; Jungreis, Irwin; Ruiz-Orera, Jorge; Sun, Zhi; Kusebauch, Ulrike; Fierro-Monti, Ivo; Abelin, Jennifer G.; Alba, M. Mar; Aspden, Julie L.; Bandyopadhyay, Sreejan; Banerjee, Kaushik; Baranov, Pavel V.; Bazzini, Ariel A.; Bourassa, Francis; Bruford, Elspeth A.; Calviello, Lorenzo; Carr, Steven A.; Carvunis, Anne-Ruxandra; Chothani, Sonia; Clauwaert, Jim; Dean, Kellie; Faridi, Pouya; Frankish, Adam; Goodale, Amy; Green, Thomas; Hubner, Norbert; Ingolia, Nicholas T.; Kellis, Manolis; Magrane, Michele; Martin, Maria Jesus; Martinez, Thomas F.; Menschaert, Gerben; Ohler, Uwe; Orchard, Sandra; Potter, Alisa; Rackham, Owen J. L.; Rees, Matthew G.; Root, David E.; Roth, Jennifer A.; Roucou, Xavier; Sialana, Fernando J.; Slavoff, Sarah A.; Swirski, Michal I.; Tierney, Jack A. S.; Trifiro, Felix-Antoine; Valen, Eivind; Vasylieva, Valeriia; Wacholder, Aaron; Wang, Shengbo; Wang, Li; Weissman, Jonathan S.; Wu, Wei; Choudhary, Jyoti S.; Bassani-Sternberg, Michal; Vizcaino, Juan Antonio; Ternette, Nicola; Brunet, Marie A.; Moritz, Robert L.; Prensner, John R.; van Heesch, Sebastiaan
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Insights, opportunities, and challenges provided by large cell atlases
err2025-10-22
err0
errOAAI
errMartin Hemberg; Federico Marini; Shila Ghazanfar; Ahmad Al Ajami; Najla Abassi; Benedict Anchang; Bérénice A. Benayoun; Yue Cao; Ken Chen; Yesid Cuesta-Astroz; Zachary DeBruine; Calliope A. Dendrou; Iwijn De Vlaminck; Katharina Imkeller; Ilya Korsunsky; Alex R. Lederer; Jessica Jingyi Li; Pieter Meysman; Clint L. Miller; Kerry A. Mullan; Uwe Ohler; Pratibha Panwar; Nikolaos Patikas; Jonas Schuck; Jacqueline H. Y. Siu; Timothy J. Triche; Alex Tsankov; Sander W. van der Laan; Masanao Yajima; Jean Yang; Fabio Zanini; Ivana Jelic
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Sensitive dissection of a genomic regulatory landscape using bulk and targeted single-cell activation
err2025-09-09
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errOAAI
errDubravka Vučićević; Che-Wei Hsu; Lorena Sofia Lopez Zepeda; Martin Burkert; Antje Hirsekorn; Ilija Bilić; Nicolai Kastelić; Markus Landthaler; Scott Allen Lacadie; Uwe Ohler
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Author Correction: A critical period of translational control during brain development at codon resolution
err2025-08-27
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errOAAI
errDermot Harnett; Mateusz C. Ambrozkiewicz; Ulrike Zinnall; Alexandra Rusanova; Ekaterina Borisova; Amelie N. Drescher; Marta Couce-Iglesias; Gabriel Villamil; Rike Dannenberg; Koshi Imami; Agnieszka Münster-Wandowski; Beatrix Fauler; Thorsten Mielke; Matthias Selbach; Markus Landthaler; Christian M. T. Spahn; Victor Tarabykin; Uwe Ohler; Matthew L. Kraushar
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Interpreting deep neural networks for the prediction of translation rates
err2024-11-09
err0
errOAAI
errKorbel, Frederick; Eroshok, Ekaterina; Ohler, Uwe
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Arabidopsis uses a molecular grounding mechanism and a biophysical circuit breaker to limit floral abscission signaling
err2024-10-25
err0
PREAI
errTaylor, Isaiah W.; Patharkar, O. Rahul; Mijar, Medhavinee; Hsu, Che-Wei; Baer, John; Niederhuth, Chad E.; Ohler, Uwe; Benfey, Philip N.; Walker, John C.
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MatK impacts differential chloroplast translation by limiting spliced tRNA-K(UUU) abundance
err2024-07-29
err0
errOAAI
errMuino, Jose M.; Ruwe, Hannes; Qu, Yujiao; Maschmann, Sascha; Chen, Wei; Zoschke, Reimo; Ohler, Uwe; Kaufmann, Kerstin; Schmitz-Linneweber, Christian
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Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation
err2024-04-12
err2
errOAAI
errTiniakou, Ioanna; Hsu, Pei-Feng; Lopez-Zepeda, Lorena S.; Garipler, Goerkem; Esteva, Eduardo; Adams, Nicholas M.; Jang, Geunhyo; Soni, Chetna; Lau, Colleen M.; Liu, Fan; Khodadadi-Jamayran, Alireza; Rodrick, Tori C.; Jones, Drew; Tsirigos, Aristotelis; Ohler, Uwe; Bedford, Mark T.; Nimer, Stephen D.; Kaartinen, Vesa; Mazzoni, Esteban O.; Reizis, Boris
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Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing
err2023-11-13
err7
errOAAI
errSung, Hsu-Min; Schott, Johanna; Boss, Philipp; Lehmann, Janina A.; Hardt, Marius Roland; Lindner, Doris; Messens, Joris; Bogeski, Ivan; Ohler, Uwe; Stoecklin, Georg
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A computational map of the human-SARS-CoV-2 protein-RNA interactome predicted at single-nucleotide resolution
err2023-02-20
err4
errOAAI
errHorlacher, Marc; Oleshko, Svitlana; Hu, Yue; Ghanbari, Mahsa; Cantini, Giulia; Schinke, Patrick; Vergara, Ernesto Elorduy; Bittner, Florian; Mueller, Nikola S.; Ohler, Uwe; Moyon, Lambert; Marsico, Annalisa
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Altered and allele-specific open chromatin landscape reveals epigenetic and genetic regulators of innate immunity in COVID-19
err2023-02-01
err9
errOAAI
errZhang, Bowen; Zhang, Zhenhua; Koeken, Valerie A. C. M.; Kumar, Saumya; Aillaud, Michelle; Tsay, Hsin-Chieh; Liu, Zhaoli; Kraft, Anke R. M.; Soon, Chai Fen; Odak, Ivan; Bosnjak, Berislav; Vlot, Anna; Swertz, Morris A.; Ohler, Uwe; Geffers, Robert; Illig, Thomas; Huehn, Jochen; Saliba, Antoine-Emmanuel; Sander, Leif Erik; Foerster, Reinhold; Xu, Cheng-Jian; Cornberg, Markus; Schulte, Leon N.; Li, Yang
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A critical period of translational control during brain development at codon resolution
err2022-12-08
err21
errOAAI
errHarnett, Dermot; Ambrozkiewicz, Mateusz C.; Zinnall, Ulrike; Rusanova, Alexandra; Borisova, Ekaterina; Drescher, Amelie N.; Couce-Iglesias, Marta; Villamil, Gabriel; Dannenberg, Rike; Imami, Koshi; Munster-Wandowski, Agnieszka; Fauler, Beatrix; Mielke, Thorsten; Selbach, Matthias; Landthaler, Markus; Spahn, Christian M. T.; Tarabykin, Victor; Ohler, Uwe; Kraushar, Matthew L.
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Control of immediate early gene expression by CPEB4-repressor complex-mediated mRNA degradation
err2022-09-12
err11
errOAAI
errPoetz, Fabian; Lebedeva, Svetlana; Schott, Johanna; Lindner, Doris; Ohler, Uwe; Stoecklin, Georg
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Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes
err2022-09-10
err7
errOAAI
errMonti, Remo; Rautenstrauch, Pia; Ghanbari, Mahsa; James, Alva Rani; Kirchler, Matthias; Ohler, Uwe; Konigorski, Stefan; Lippert, Christoph
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Cluster-independent marker feature identification from single-cell omics data using SEMITONES
err2022-07-31
err4
errOAAI
errVlot, Anna Hendrika Cornelia; Maghsudi, Setareh; Ohler, Uwe
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Standardized annotation of translated open reading frames
err2022-07-13
err95
errOAAI
errMudge, Jonathan M.; Ruiz-Orera, Jorge; Prensner, John R.; Brunet, Marie A.; Calvet, Ferriol; Jungreis, Irwin; Gonzalez, Jose Manuel; Magrane, Michele; Martinez, Thomas F.; Schulz, Jana Felicitas; Yang, Yucheng T.; Alba, M. Mar; Aspden, Julie L.; Baranov, Pavel V.; Bazzini, Ariel A.; Bruford, Elspeth; Martin, Maria Jesus; Calviello, Lorenzo; Carvunis, Anne-Ruxandra; Chen, Jin; Couso, Juan Pablo; Deutsch, Eric W.; Flicek, Paul; Frankish, Adam; Gerstein, Mark; Hubner, Norbert; Ingolia, Nicholas T.; Kellis, Manolis; Menschaert, Gerben; Moritz, Robert L.; Ohler, Uwe; Roucou, Xavier; Saghatelian, Alan; Weissman, Jonathan S.; van Heesch, Sebastiaan
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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
err2022-07-04
err34
errOAAI
errBaranasic, Damir; Hortenhuber, Matthias; Balwierz, Piotr J.; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Varnai, Csilla; Hadzhiev, Yavor; Jimenez-Gonzalez, Ada; Li, Nan; Wragg, Joseph; D'Orazio, Fabio M.; Relic, Dorde; Pachkov, Mikhail; Diaz, Noelia; Hernandez-Rodriguez, Benjamin; Chen, Zelin; Stoiber, Marcus; Dong, Michael; Stevens, Irene; Ross, Samuel E.; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C.; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R.; Acemel, Rafael D.; Naranjo, Silvia; Lapinski, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M.; Winata, Cecilia; van Eeden, Freek; Vaquerizas, Juan M.; Luis Gomez-Skarmeta, Jose; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren; van Nimwegen, Erik; Westerfield, Monte; Wardle, Fiona C.; Daub, Carsten O.; Lenhard, Boris; Muller, Ferenc
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