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Badrinath Roysam

University of Houston System
H-index:52
Citation Count:1.2万
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Computational delineation and cellular profiling of murine cortical cell layers using multiplex immunofluorescence imaging

利用多色免疫荧光成像对小鼠皮层细胞层进行计算描绘和细胞谱分析

Journal of Neuroscience Methods
IF2.3
2026-05-230
PRE
Singh, Aditi; Maynard, Mark E.; Huang, Liqiang; Kang, Anthony M.; Prasad, Saurabh; Kasthuri, Kannan; Sedlock, Andrea; Maric, Dragan; Dash, Pramod K.; Redell, John B.; Roysam, Badrinath
Weak-to-strong generalization enables fully automated training of multi-head mask-RCNN model for segmenting densely overlapping cell nuclei in multiplex whole-slice brain images

弱到强泛化实现多头掩码RCNN模型对多重全切片脑图像中密集重叠细胞核分割的完全自动化训练

Frontiers in Bioinformatics
IF3.9
2026-05-110
OAAI
LB Lin Bai; XL Xiaoyang Li; LH Liqiang Huang; QN Quynh Nguyen; HV Hien Van Nguyen; SP Saurabh Prasad; DM Dragan Maric; JR John Redell; PD Pramod Dash; BR Badrinath Roysam
mViSE: A visual search engine for analyzing multiplex IHC brain tissue images (spatial proteomics)

mViSE：一个用于分析多重IHC脑组织图像（空间蛋白质组学）的视觉搜索引擎

Scientific Reports
IF3.9
2026-02-230
OAAI
Liqiang Huang; Rachel Mills; Saikiran Mandula; Lin Bai; Mahtab Jeyhani; John Redell; Hien Nguyen; Saurabh Prasad; Dragan Maric; Badrinath Roysam
Label-free TIMING: an efficient; reliable and scalable AI workflow for automated profiling of cell-cell interaction behaviors in nanowell arrays

无标签TIMING：一种高效、可靠且可扩展的AI工作流，用于自动化分析纳米孔阵列中的细胞-细胞相互作用行为

Frontiers in Bioinformatics
IF3.9
2026-02-120
OA
Anuj S. Todkar; Shyam Reddy Kotha; Lin Bai; Saikiran Mandula; Hannah B. Wilson; Daniel D. Meyer; Rebecca Berdeaux; Badrinath Roysam; Navin Varadarajan
A Combination of Low Doses of Lithium and Valproate Improves Cognitive Outcomes after Mild Traumatic Brain Injury
JOURNAL OF NEUROTRAUMA
IF3.8
2024-10-280
PRE
Redell, John B.; Maynard, Mark E.; Hylin, Michael J.; Hood, Kimberly N.; Sedlock, Andrea; Maric, Dragan; Zhao, Jing; Moore, Anthony N.; Roysam, Badrinath; Pati, Shibani; Dash, Pramod K.
BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets (vol 20, pg 824, 2023)
NATURE METHODS
IF32.1
2024-08-020
OA
Manubens-Gil, Linus; Zhou, Zhi; Chen, Hanbo; Ramanathan, Arvind; Liu, Xiaoxiao; Liu, Yufeng; Bria, Alessandro; Gillette, Todd; Ruan, Zongcai; Yang, Jian; Radojevic, Miroslav; Zhao, Ting; Cheng, Li; Qu, Lei; Liu, Siqi; Bouchard, Kristofer E.; Gu, Lin; Cai, Weidong; Ji, Shuiwang; Roysam, Badrinath; Wang, Ching-Wei; Yu, Hongchuan; Sironi, Amos; Iascone, Daniel Maxim; Zhou, Jie; Bas, Erhan; Conde-Sousa, Eduardo; Aguiar, Paulo; Li, Xiang; Li, Yujie; Nanda, Sumit; Wang, Yuan; Muresan, Leila; Fua, Pascal; Ye, Bing; He, Hai-yan; Staiger, Jochen F.; Peter, Manuel; Cox, Daniel N.; Simonneau, Michel; Oberlaender, Marcel; Jefferis, Gregory; Ito, Kei; Gonzalez-Bellido, Paloma; Kim, Jinhyun; Rubel, Edwin; Cline, Hollis T.; Zeng, Hongkui; Nern, Aljoscha; Chiang, Ann-Shyn; Yao, Jianhua; Roskams, Jane; Livesey, Rick; Stevens, Janine; Liu, Tianming; Dang, Chinh; Guo, Yike; Zhong, Ning; Tourassi, Georgia; Hill, Sean; Hawrylycz, Michael; Koch, Christof; Meijering, Erik; Ascoli, Giorgio A.; Peng, Hanchuan
Cellular data extraction from multiplexed brain imaging data using self-supervised Dual-loss Adaptive Masked Autoencoder
ARTIFICIAL INTELLIGENCE IN MEDICINE
IF6.2
2024-05-010
PRE
Ly, Son T.; Lin, Bai; Vo, Hung Q.; Maric, Dragan; Roysam, Badrinath; Nguyen, Hien V.
BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets
NATURE METHODS
IF32.1
2023-04-1722
OA
Manubens-Gil, Linus; Zhou, Zhi; Chen, Hanbo; Ramanathan, Arvind; Liu, Xiaoxiao; Liu, Yufeng; Bria, Alessandro; Gillette, Todd; Ruan, Zongcai; Yang, Jian; Radojevic, Miroslav; Zhao, Ting; Cheng, Li; Qu, Lei; Liu, Siqi; Bouchard, Kristofer E.; Gu, Lin; Cai, Weidong; Ji, Shuiwang; Roysam, Badrinath; Wang, Ching-Wei; Yu, Hongchuan; Sironi, Amos; Iascone, Daniel Maxim; Zhou, Jie; Bas, Erhan; Conde-Sousa, Eduardo; Aguiar, Paulo; Li, Xiang; Li, Yujie; Nanda, Sumit; Wang, Yuan; Muresan, Leila; Fua, Pascal; Ye, Bing; He, Hai-yan; Staiger, Jochen F.; Peter, Manuel; Cox, Daniel N.; Simonneau, Michel; Oberlaender, Marcel; Jefferis, Gregory; Ito, Kei; Gonzalez-Bellido, Paloma; Kim, Jinhyun; Rubel, Edwin; Cline, Hollis T.; Zeng, Hongkui; Nern, Aljoscha; Chiang, Ann-Shyn; Yao, Jianhua; Roskams, Jane; Livesey, Rick; Stevens, Janine; Liu, Tianming; Dang, Chinh; Guo, Yike; Zhong, Ning; Tourassi, Georgia; Hill, Sean; Hawrylycz, Michael; Koch, Christof; Meijering, Erik; Ascoli, Giorgio A.; Peng, Hanchuan
Salicylic acid inducible nucleocytoplasmic shuttling of NPR1 fusion proteins in human cells
BIOTECHNOLOGY AND BIOENGINEERING
IF3.6
2021-11-031
OA
Sadeghi, Fatemeh; Kumar, Monish; Bandey, Irfan N.; Li, Xiaoyang; Roysam, Badrinath; Varadarajan, Navin
Whole-brain tissue mapping toolkit using large-scale highly multiplexed immunofluorescence imaging and deep neural networks

使用大规模高度多重免疫荧光成像和深度神经网络的全脑组织映射工具包

NATURE COMMUNICATIONS
IF15.7
2021-03-1048
OAAI
Maric, Dragan; Jahanipour, Jahandar; Li, Xiaoyang Rebecca; Singh, Aditi; Mobiny, Aryan; Hien Van Nguyen; Sedlock, Andrea; Grama, Kedar; Roysam, Badrinath
Artificial intelligence and machine learning in nephropathology

肾脏病理学中的人工智能和机器学习

KIDNEY INTERNATIONAL
IF12.6
2020-07-0159
OAAI
Becker, Jan U.; Mayerich, David; Padmanabhan, Meghana; Barratt, Jonathan; Ernst, Angela; Boor, Peter; Cicalese, Pietro A.; Mohan, Chandra; Nguyen, Hien V.; Roysam, Badrinath
Automated Classification of Apoptosis in Phase Contrast Microscopy Using Capsule Network
IEEE TRANSACTIONS ON MEDICAL IMAGING
IF9.8
2020-01-0142
PREAI
Mobiny, Aryan; Lu, Hengyang; Nguyen, Hien V.; Roysam, Badrinath; Varadarajan, Navin
Defining potency of CAR+ T cells: Fast and furious or slow and steady
ONCOIMMUNOLOGY
IF6.3
2018-05-077
OAAI
Liadi, Ivan; Singh, Harjeet; Romain, Gabrielle; Roysam, Badrinath; Cooper, Laurence J. N.; Varadarajan, Navin
Unsupervised Profiling of Microglial Arbor Morphologies and Distribution Using a Nonparametric Bayesian Approach
IEEE JOURNAL OF SELECTED TOPICS IN SIGNAL PROCESSING
IF13.7
2016-02-016
PREAI
Xu, Yan; Megjhani, Murad; Trett, Kristen; Shain, William; Roysam, Badrinath; Han, Zhu
Preexisting epithelial diversity in normal human livers: A tissue-tethered cytometric analysis in portal/periportal epithelial cells
HEPATOLOGY
IF15.8
2013-04-0139
OAAI
Isse, Kumiko; Lesniak, Andrew; Grama, Kedar; Maier, John; Specht, Susan; Castillo-Rama, Marcela; Lunz, John; Roysam, Badrinath; Michalopoulos, George; Demetris, Anthony J.
A Vector SIFT Detector for Interest Point Detection in Hyperspectral Imagery
IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING
IF8.6
2012-11-0124
PREAI
Dorado-Munoz, Leidy P.; Velez-Reyes, Miguel; Mukherjee, Amit; Roysam, Badrinath
Biological imaging software tools

生物成像软件工具

NATURE METHODS
IF32.1
2012-06-28435
OAAI
Eliceiri, Kevin W.; Berthold, Michael R.; Goldberg, Ilya G.; Ibanez, Luis; Manjunath, B. S.; Martone, Maryann E.; Murphy, Robert F.; Peng, Hanchuan; Plant, Anne L.; Roysam, Badrinath; Stuurmann, Nico; Swedlow, Jason R.; Tomancak, Pavel; Carpenter, Anne E.
Digital Transplantation Pathology: Combining Whole Slide Imaging, Multiplex Staining and Automated Image Analysis
AMERICAN JOURNAL OF TRANSPLANTATION
IF8.2
2012-01-0175
OAAI
Isse, K.; Lesniak, A.; Grama, K.; Roysam, B.; Minervini, M. I.; Demetris, A. J.
Vertebrate neural stem cell segmentation, tracking and lineaging with validation and editing
NATURE PROTOCOLS
IF16
2011-11-1753
OAAI
Winter, Mark; Wait, Eric; Roysam, Badrinath; Goderie, Susan K.; Ali, Rania Ahmed Naguib; Kokovay, Erzsebet; Temple, Sally; Cohen, Andrew R.
Coupled minimum-cost flow cell tracking for high-throughput quantitative analysis
MEDICAL IMAGE ANALYSIS
IF11.8
2011-08-01119
PRE
Padfield, Dirk; Rittscher, Jens; Roysam, Badrinath

Research Directions

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G
Gang Lin
H-index:16Papers:57Citations:3,040
K
Kedar Grama
H-index:5Papers:6Citations:287
S
Sally Temple
H-index:65Papers:310Citations:1.9万
H
Hien Van Nguyen
H-index:32Papers:165Citations:3,740
W
William Shain
H-index:47Papers:199Citations:9,105
S
Susan K. Goderie
H-index:29Papers:61Citations:6,548
N
Navin Varadarajan
H-index:32Papers:202Citations:3,861
D
Dragan Maric
H-index:67Papers:404Citations:1.6万
A
Andrea Sedlock
H-index:5Papers:14Citations:682
R
Richard J. Radke
H-index:34Papers:185Citations:5,737