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Jakub Orzechowski Westholm

Stockholm University

28H-index
67Paper Count
8.4KCitation Count
Published Papers 32
Publication Date
Nuclear AGO2 supports influenza A virus replication through type-I interferon regulation
err2025-04-12
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errHuang, Hsiang-Chi; Fong, Michelle; Nowak, Iwona; Shcherbinina, Evgeniia; Lobo, Vivian; Besavilla, Danica F.; Huynh, Hang T.; Schon, Karin; Westholm, Jakub O.; Fernandez, Carola; Patel, Angana A. H.; Wiel, Clotilde; Sayin, Volkan, I; Anastasakis, Dimitrios G.; Sarshad, Aishe A.
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Loss of Lamin A leads to the nuclear translocation of AGO2 and compromised RNA interference
err2024-07-12
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errLobo, Vivian; Nowak, Iwona; Fernandez, Carola; Muler, Ana Iris Correa; Westholm, Jakub O.; Huang, Hsiang-Chi; Fabrik, Ivo; Huynh, Hang T.; Shcherbinina, Evgeniia; Poyraz, Melis; Hartlova, Anetta; Benhalevy, Daniel; Angeletti, Davide; Sarshad, Aishe A.
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Spatially resolved multiomics on the neuronal effects induced by spaceflight in mice
err2024-06-11
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errMasarapu, Yuvarani; Cekanaviciute, Egle; Andrusivova, Zaneta; Westholm, Jakub O.; Bjorklund, Asa; Fallegger, Robin; Badia-i-Mompel, Pau; Boyko, Valery; Vasisht, Shubha; Saravia-Butler, Amanda; Gebre, Samrawit; Lazar, Eniko; Graziano, Marta; Frapard, Solene; Hinshaw, Robert G.; Bergmann, Olaf; Taylor, Deanne M.; Wallace, Douglas C.; Sylven, Christer; Meletis, Konstantinos; Saez-Rodriguez, Julio; Galazka, Jonathan M.; Costes, Sylvain V.; Giacomello, Stefania
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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision
err2023-07-13
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errVromman, Marieke; Anckaert, Jasper; Bortoluzzi, Stefania; Buratin, Alessia; Chen, Chia-Ying; Chu, Qinjie; Chuang, Trees-Juen; Dehghannasiri, Roozbeh; Dieterich, Christoph; Dong, Xin; Flicek, Paul; Gaffo, Enrico; Gu, Wanjun; He, Chunjiang; Hoffmann, Steve; Izuogu, Osagie; Jackson, Michael S.; Jakobi, Tobias; Lai, Eric C.; Nuytens, Justine; Salzman, Julia; Santibanez-Koref, Mauro; Stadler, Peter; Thas, Olivier; Eynde, Eveline Vanden; Verniers, Kimberly; Wen, Guoxia; Westholm, Jakub; Yang, Li; Ye, Chu-Yu; Yigit, Nurten; Yuan, Guo-Hua; Zhang, Jinyang; Zhao, Fangqing; Vandesompele, Jo; Volders, Pieter-Jan
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Acute sleep loss alters circulating fibroblast growth factor 21 levels in humans: A randomised crossover trial
err2021-09-02
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errBrandao, Luiz Eduardo Mateus; Espes, Daniel; Westholm, Jakub Orzechowski; Martikainen, Teemu; Westerlund, Nestori; Lampola, Lauri; Popa, Alexandru; Vogel, Heike; Schurmann, Annette; Dickson, Suzanne L.; Benedict, Christian; Cedernaes, Jonathan
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Profiling of Extracellular Small RNAs Highlights a Strong Bias towards Non-Vesicular Secretion
errCELLS
IF5.2
err2021-06-18
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errSork, Helena; Conceicao, Mariana; Corso, Giulia; Nordin, Joel; Lee, Yi Xin Fiona; Krjutskov, Kaarel; Orzechowski Westholm, Jakub; Vader, Pieter; Pauwels, Marie; Vandenbroucke, Roosmarijn E.; Wood, Matthew J. A.; EL Andaloussi, Samir; Mager, Imre
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Characterization of the nuclear and cytosolic transcriptomes in human brain tissue reveals new insights into the subcellular distribution of RNA transcripts
err2021-02-18
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errZaghlool, Ammar; Niazi, Adnan; Bjorklund, Asa K.; Westholm, Jakub Orzechowski; Ameur, Adam; Feuk, Lars
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Building blocks are synthesized on demand during the yeast cell cycle
err2020-03-25
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errCampbell, Kate; Westholm, Jakub; Kasvandik, Sergo; Di Bartolomeoa, Francesca; Mormino, Maurizio; Nielsen, Jens
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Comprehensive RNA-Sequencing Analysis in Serum and Muscle Reveals Novel Small RNA Signatures with Biomarker Potential for DMD
err2018-12-01
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errCoenen-Stass, Anna M. L.; Sork, Helena; Gatto, Sole; Godfrey, Caroline; Bhomra, Amarjit; Krjutskov, Kaarel; Hart, Jonathan R.; Westholm, Jakub O.; O'Donovan, Liz; Roos, Andreas; Lochmueller, Hanns; Puri, Pier Lorenzo; EL Andaloussi, Samir; Wood, Matthew J. A.; Roberts, Thomas C.
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Expression profiling and in situ screening of circular RNAs in human tissues
err2018-11-16
err23
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errZaghlool, Ammar; Ameur, Adam; Wu, Chenglin; Westholm, Jakub Orzechowski; Niazi, Adnan; Manivannan, Manimozhi; Bramlett, Kelli; Nilsson, Mats; Feuk, Lars
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Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans
err2018-08-03
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errCedernaes, Jonathan; Schonke, Milena; Westholm, Jakub Orzechowski; Mi, Jia; Chibalin, Alexander; Voisin, Sarah; Osler, Megan; Vogel, Heike; Hornaeus, Katarina; Dickson, Suzanne L.; Lind, Sara Bergstrom; Bergquist, Jonas; Schioth, Helgi B.; Zierath, Juleen R.; Benedict, Christian
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Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome
err2018-07-17
err116
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errSork, Helena; Corso, Giulia; Krjutskov, Kaarel; Johansson, Henrik J.; Nordin, Joel Z.; Wiklander, Oscar P. B.; Lee, Yi Xin Fiona; Westholm, Jakub Orzechowski; Lehtio, Janne; Wood, Matthew J. A.; Mager, Imre; El Andaloussi, Samir
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ACUTE SLEEP LEADS TO TISSUE-SPECIFIC EPIGENETIC AND TRANSCRIPTIONAL RESPONSES IN HEALTHY HUMANS
errSLEEP
IF4.9
err2018-04-27
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errCedernaes, J.; Westholm, Orzechowski J.; Benedict, C.
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Massive and parallel expression profiling using microarrayed single-cell sequencing
err2016-10-14
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errVickovic, Sanja; Stahl, Patrik L.; Salmen, Fredrik; Giatrellis, Sarantis; Westholm, Jakub Orzechowski; Mollbrink, Annelie; Navarro, Jose Fernandez; Custodio, Joaquin; Bienko, Magda; Sutton, Lesley-Ann; Rosenquist, Richard; Frisen, Jonas; Lundeberg, Joakim
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Genome-wide Analysis of Drosophila Circular RNAs Reveals Their Structural and Sequence Properties and Age-Dependent Neural Accumulation
err2014-12-01
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errWestholm, Jakub O.; Miura, Pedro; Olson, Sara; Shenker, Sol; Joseph, Brian; Sanfilippo, Piero; Celniker, Susan E.; Graveley, Brenton R.; Lai, Eric C.
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Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
err2014-07-01
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errWen, Jiayu; Mohammed, Jaaved; Bortolamiol-Becet, Diane; Tsai, Harrison; Robine, Nicolas; Westholm, Jakub O.; Ladewig, Erik; Dai, Qi; Okamura, Katsutomo; Flynt, Alex S.; Zhang, Dayu; Andrews, Justen; Cherbas, Lucy; Kaufman, Thomas C.; Cherbas, Peter; Siepel, Adam; Lai, Eric C.
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Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila
err2013-11-12
err25
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errYang, Jr-Shiuan; Smibert, Peter; Westholm, Jakub O.; Jee, David; Maurin, Thomas; Lai, Eric C.
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Widespread and extensive lengthening of 3′ UTRs in the mammalian brain
err2013-03-21
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errMiura, Pedro; Shenker, Sol; Andreu-Agullo, Celia; Westholm, Jakub O.; Lai, Eric C.
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Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila (vol 1, pg 277, 2012)
err2013-03-01
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errSmibert, Peter; Miura, Pedro; Westholm, Jakub O.; Shenker, Sol; May, Gemma; Duff, Michael O.; Zhang, Dayu; Eads, Brian D.; Carlson, Joe; Brown, James B.; Eisman, Robert C.; Andrews, Justen; Kaufman, Thomas; Cherbas, Peter; Celniker, Susan E.; Graveley, Brenton R.; Lai, Eric C.
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Discovery of hundreds of mirtrons in mouse and human small RNA data
err2012-09-05
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errLadewig, Erik; Okamura, Katsutomo; Flynt, Alex S.; Westholm, Jakub O.; Lai, Eric C.
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