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SaveOmniPath: integrated knowledgebase for multi-omics analysis
Turei, Denes; Schaul, Jonathan; Palacio-Escat, Nicolas; Bohar, Balazs; Bai, Yunfan; Ceccarelli, Francesco; Cevrim, Elif; Daley, Macabe; Darcan, Melih; Dimitrov, Daniel; Dogan, Tunca; Domingo-Fernandez, Daniel; Dugourd, Aurelien; Gabor, Attila; Gul, Lejla; Hall, Benjamin A.; Hoyt, Charles Tapley; Ivanova, Olga; Klein, Michal; Lawrence, Toby; Mananes, Diego; Modos, Dezso; Muller-Dott, Sophia; Olbei, Marton; Schmidt, Christina; Sen, Bunyamin; Theis, Fabian J.; Unlu, Atabey; Ulusoy, Erva; Valdeolivas, Alberto; Korcsmaros, Tamas; Saez-Rodriguez, Julio Share Save Share Save Share Save AutophagyNet: high-resolution data source for the analysis of autophagy and its regulationCsabai, Luca; Bohar, Balazs; Tuerei, Denes; Prabhu, Sowmya; Foldvari-Nagy, Laszlo; Madgwick, Matthew; Fazekas, David; Modos, Dezso; oelbei, Marton; Halka, Themis; Poletti, Martina; Kornilova, Polina; Kadlecsik, Tamas; Demeter, Amanda; Szalay-Beko, Mate; Kapuy, Orsolya; Lenti, Katalin; Vellai, Tibor; Gul, Lejla; Korcsmaros, Tamas Share Save Democratizing knowledge representation with BioCypherLobentanzer, Sebastian; Aloy, Patrick; Baumbach, Jan; Bohar, Balazs; Carey, Vincent J.; Charoentong, Pornpimol; Danhauser, Katharina; Dogan, Tunca; Dreo, Johann; Dunham, Ian; Farr, Elias; Fernandez-Torras, Adria; Gyori, Benjamin M.; Hartung, Michael; Hoyt, Charles Tapley; Klein, Christoph; Korcsmaros, Tamas; Maier, Andreas; Mann, Matthias; Ochoa, David; Pareja-Lorente, Elena; Popp, Ferdinand; Preusse, Martin; Probul, Niklas; Schwikowski, Benno; Sen, Buenyamin; Strauss, Maximilian T.; Turei, Denes; Ulusoy, Erva; Waltemath, Dagmar; Wodke, Judith A. H.; Saez-Rodriguez, Julio Share Save A microfluidic Braille valve platform for on-demand production, combinatorial screening and sorting of chemically distinct dropletsUtharala, Ramesh; Grab, Anna; Vafaizadeh, Vida; Peschke, Nicolas; Ballinger, Martine; Turei, Denes; Tuechler, Nadine; Ma, Wenwei; Ivanova, Olga; Ortiz, Alejandro Gil; Saez-Rodriguez, Julio; Merten, Christoph A. Share Save Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq dataDimitrov, Daniel; Tuerei, Denes; Garrido-Rodriguez, Martin; Burmedi, Paul L.; Nagai, James S.; Boys, Charlotte; Flores, Ricardo O. Ramirez; Kim, Hyojin; Szalai, Bence; Costa, Ivan G.; Valdeolivas, Alberto; Dugourd, Aurelien; Saez-Rodriguez, Julio Share Save Mapping the epithelial-immune cell interactome upon infection in the gut and the upper airwaysPoletti, Martina; Treveil, Agatha; Csabai, Luca; Gul, Leila; Modos, Dezso; Madgwick, Matthew; Olbei, Marton; Bohar, Balazs; Valdeolivas, Alberto; Turei, Denes; Verstockt, Bram; Triana, Sergio; Alexandrov, Theodore; Saez-Rodriguez, Julio; Stanifer, Megan L.; Boulant, Steeve; Korcsmaros, Tamas Share Save COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021)Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanismsOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save SignaLink3: a multi-layered resource to uncover tissue-specific signaling networksCsabai, Luca; Fazekas, David; Kadlecsik, Tamas; Szalay-Beko, Mate; Bohar, Balazs; Madgwick, Matthew; Modos, Dezso; Olbei, Marton; Gul, Lejla; Sudhakar, Padhmanand; Kubisch, Janos; Oyeyemi, Oyebode James; Liska, Orsolya; Ari, Eszter; Hotzi, Bernadette; Billes, Viktor A.; Molnar, Eszter; Foldvari-Nagy, Laszlo; Csalyi, Kitti; Demeter, Amanda; Papai, Nora; Koltai, Mihaly; Varga, Mate; Lenti, Katalin; Farkas, Illes J.; Tuerei, Denes; Csermely, Peter; Vellai, Tibor; Korcsmaros, Tamas Share Save Share Save Share Save Integrated intra- and intercellular signaling knowledge for multicellular omics analysisTuerei, Denes; Valdeolivas, Alberto; Gul, Lejla; Palacio-Escat, Nicolas; Klein, Michal; Ivanova, Olga; Oelbei, Marton; Gabor, Attila; Theis, Fabian; Korcsmaros, Tamas; Saez-Rodriguez, Julio Share Save Share Save Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancerTang, Jing; Gautam, Prson; Gupta, Abhishekh; He, Liye; Timonen, Sanna; Akimov, Yevhen; Wang, Wenyu; Szwajda, Agnieszka; Jaiswal, Alok; Turei, Denes; Yadav, Bhagwan; Kankainen, Matti; Saarela, Jani; Saez-Rodriguez, Julio; Wennerberg, Krister; Aittokallio, Tero Share Save Adipocyte-secreted BMP8b mediates adrenergic-induced remodeling of the neuro-vascular network in adipose tissuePellegrinelli, Vanessa; Peirce, Vivian J.; Howard, Laura; Virtue, Samuel; Tuerei, Denes; Senzacqua, Martina; Frontini, Andrea; Dalley, Jeffrey W.; Horton, Antony R.; Bidault, Guillaume; Severi, Ilenia; Whittle, Andrew; Rahmouni, Kamal; Saez-Rodriguez, Julio; Cinti, Saverio; Davies, Alun M.; Vidal-Puig, Antonio Share Save Share Save 
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