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R

Rustem F. Ismagilov

California Institute of Technology

85H-index
285Paper Count
3.0WCitation Count
Published Papers 146
Publication Date
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Faecalibacterium prausnitzii, depleted in the Parkinson’s disease microbiome, improves motor deficits in α-synuclein overexpressing mice
errnpj Parkinson's Disease
IF8.2
err2026-03-05
err0
errOAAI
errAnastasiya Moiseyenko; Giacomo Antonello; Aubrey M. Schonhoff; Joseph C. Boktor; Kaelyn Long; Blake Dirks; Anastasiya D. Oguienko; Alexander Viloria Winnett; Patrick Simpson; Dorsa Daeizadeh; Rustem F. Ismagilov; Rosa Krajmalnik-Brown; Nicola Segata; Levi D. Waldron; Sarkis K. Mazmanian
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Inducible, but not constitutive, pancreatic REG/Reg isoforms are regulated by intestinal microbiota and pancreatic diseases
errMucosal Immunology
IF7.6
err2025-05-19
err0
errOAAI
errYixuan D. Zhou; Macy R. Komnick; Fabiola Sepulveda; Grace Liu; Elida Nieves-Ortiz; Kelsey Meador; Ornella Ndatabaye; Aliia Fatkhullina; Asha Bozicevich; Braden Juengel; Natalie J. Wu-Woods; Paulina M. Naydenkov; Johnathan Kent; Nathaniel Christiansen; Maria Lucia Madariaga; Piotr Witkowski; Rustem F. Ismagilov; Daria Esterházy
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Immunoglobulin A controls intestinal virus colonization to preserve immune homeostasis
errCELL HOST & MICROBE
IF18.7
err2025-04-01
err1
PREAI
errLisicka, Wioletta; Earley, Zachary M.; Sifakis, Joseph J.; Erickson, Steven A.; Mattingly, Jonathan R.; Wu-Woods, Natalie J.; Krishnamurthy, Siddharth R.; Belkaid, Yasmine; Ismagilov, Rustem F.; Cyster, Jason G.; Riesenfeld, Samantha J.; Bendelac, Albert; Jabri, Bana
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Validating Combination Throat-Nasal Swab Specimens for Coronavirus Disease 2019 Tests Would Improve Early Detection, Especially for the Most Vulnerable
errCLINICAL INFECTIOUS DISEASES
IF7.3
err2024-07-23
err0
errOAAI
errWinnett, Alexander Viloria; Stenzel, Timothy; Ismagilov, Rustem F.
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Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples
errNATURE METHODS
IF32.1
err2023-10-12
err6
PREAI
errWu-Woods, Natalie J.; Barlow, Jacob T.; Trigodet, Florian; Shaw, Dustin G.; Romano, Anna E.; Jabri, Bana; Eren, A. Murat; Ismagilov, Rustem F.
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Quantitative whole-tissue 3D imaging reveals bacteria in close association with mouse jejunum mucosa
errNPJ BIOFILMS AND MICROBIOMES
IF9.2
err2023-09-07
err0
errOAAI
errPoceviciute, Roberta; Bogatyrev, Said R.; Romano, Anna E.; Dilmore, Amanda H.; Mondragon-Palomino, Octavio; Takko, Heli; Pradhan, Ojas; Ismagilov, Rustem F.
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Daily SARS-CoV-2 Nasal Antigen Tests Miss Infected and Presumably Infectious People Due to Viral Load Differences among Specimen Types
errMICROBIOLOGY SPECTRUM
IF3.8
err2023-08-17
err8
errOAAI
errWinnett, Alexander Viloria; Akana, Reid; Shelby, Natasha; Davich, Hannah; Caldera, Saharai; Yamada, Taikun; Reyna, John Raymond B.; Romano, Anna E.; Carter, Alyssa M.; Kim, Mi Kyung; Thomson, Matt; Tognazzini, Colten; Feaster, Matthew; Goh, Ying-Ying; Chew, Yap Ching; Ismagilov, Rustem F.
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Extreme differences in SARS-CoV-2 viral loads among respiratory specimen types during presumed pre-infectious and infectious periods
errPNAS NEXUS
IF3.8
err2023-03-14
err13
errOAAI
errWinnett, Alexander Viloria; Akana, Reid; Shelby, Natasha; Davich, Hannah; Caldera, Saharai; Yamada, Taikun; Reyna, John Raymond B.; Romano, Anna E.; Carter, Alyssa M.; Kim, Mi Kyung; Thomson, Matt; Tognazzini, Colten; Feaster, Matthew; Goh, Ying-Ying; Chew, Yap Ching; Ismagilov, Rustem F.
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errSave
Laboratory Evaluation Links Some False-Positive COVID-19 Antigen Test Results Observed in a Field Study to a Specific Lot of Test Strips
errOPEN FORUM INFECTIOUS DISEASES
IF3.8
err2023-01-05
err1
errOAAI
errCarter, Alyssa M.; Winnett, Alexander Viloria; Romano, Anna E.; Akana, Reid; Shelby, Natasha; Ismagilov, Rustem F.
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errSave
GATA4 controls regionalization of tissue immunity and commensal-driven immunopathology
errIMMUNITY
IF26.3
err2023-01-01
err11
errOAAI
errEarley, Zachary M.; Lisicka, Wioletta; Sifakis, Joseph J.; Aguirre-Gamboa, Raul; Kowalczyk, Anita; Barlow, Jacob T.; Shaw, Dustin G.; Discepolo, Valentina; Tan, Ineke L.; Gona, Saideep; Ernest, Jordan D.; Matzinger, Polly; Barreiro, Luis B.; Morgun, Andrey; Bendelac, Albert; Ismagilov, Rustem F.; Shulzhenko, Natalia; Riesenfeld, Samantha J.; Jabri, Bana
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Morning SARS-CoV-2 Testing Yields Better Detection of Infection Due to Higher Viral Loads in Saliva and Nasal Swabs upon Waking
errMICROBIOLOGY SPECTRUM
IF3.8
err2022-12-21
err8
errOAAI
errWinnett, Alexander Viloria; Porter, Michael K.; Romano, Anna E.; Savela, Emily S.; Akana, Reid; Shelby, Natasha; Reyes, Jessica A.; Schlenker, Noah W.; Cooper, Matthew M.; Carter, Alyssa M.; Ji, Jenny; Barlow, Jacob T.; Tognazzini, Colten; Feaster, Matthew; Goh, Ying-Ying; Ismagilov, Rustem F.
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errSave
Three-dimensional imaging for the quantification of spatial patterns in microbiota of the intestinal mucosa
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2022-04-27
err14
errOAAI
errMondragon-Palomino, Octavio; Poceviciute, Roberta; Lignell, Antti; Griffiths, Jessica A.; Takko, Heli; Ismagilov, Rustem F.
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errSave
Quantitative SARS-CoV-2 Viral-Load Curves in Paired Saliva Samples and Nasal Swabs Inform Appropriate Respiratory Sampling Site and Analytical Test Sensitivity Required for Earliest Viral Detection
errJOURNAL OF CLINICAL MICROBIOLOGY
IF5.4
err2022-02-16
err61
errOAAI
errSavela, Emily S.; Winnett, Alexander Viloria; Romano, Anna E.; Porter, Michael K.; Shelby, Natasha; Akana, Reid; Ji, Jenny; Cooper, Matthew M.; Schlenker, Noah W.; Reyes, Jessica A.; Carter, Alyssa M.; Barlow, Jacob T.; Tognazzini, Colten; Feaster, Matthew; Goh, Ying-Ying; Ismagilov, Rustem F.
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errSave
Quantitative sequencing clarifies the role of disruptor taxa, oral microbiota, and strict anaerobes in the human small-intestine microbiome
errMICROBIOME
IF12.7
err2021-11-02
err39
errOAAI
errBarlow, Jacob T.; Leite, Gabriela; Romano, Anna E.; Sedighi, Rashin; Chang, Christine; Celly, Shreya; Rezaie, Ali; Mathur, Ruchi; Pimentel, Mark; Ismagilov, Rustem F.
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Single-cell measurement of higher-order 3D genome organization with scSPRITE
errNATURE BIOTECHNOLOGY
IF41.7
err2021-08-23
err69
errOAAI
errArrastia, Mary, V; Jachowicz, Joanna W.; Ollikainen, Noah; Curtis, Matthew S.; Lai, Charlotte; Quinodoz, Sofia A.; Selck, David A.; Ismagilov, Rustem F.; Guttman, Mitchell
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Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome community
errSCIENCE ADVANCES
IF12.5
err2020-08-14
err27
errOAAI
errKhazaei, Tahmineh; Williams, Rory L.; Bogatyrev, Said R.; Doyle, John C.; Henry, Christopher S.; Ismagilov, Rustem F.
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errSave
A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities (vol 11, 2590, 2020)
errNATURE COMMUNICATIONS
IF15.7
err2020-07-06
err1
errOAAI
errBarlow, Jacob T.; Bogatyrev, Said R.; Ismagilov, Rustem F.
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errSave
A quantitative sequencing framework for absolute abundance measurements of mucosal and lumenal microbial communities
errNATURE COMMUNICATIONS
IF15.7
err2020-05-22
err111
errOAAI
errBarlow, Jacob T.; Bogatyrev, Said R.; Ismagilov, Rustem F.
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Self-partitioning SlipChip for slip-induced droplet formation and human papillomavirus viral load quantification with digital LAMP
errBIOSENSORS & BIOELECTRONICS
IF10.5
err2020-05-01
err74
errOAAI
errYu, Ziqing; Lyu, Weiyuan; Yu, Mengchao; Wang, Qian; Qu, Haijun; Ismagilov, Rustem F.; Han, Xu; Lai, Dongmei; Shen, Feng
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errSave
Real-time kinetics and high-resolution melt curves in single-molecule digital LAMP to differentiate and study specific and non-specific amplification
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-02-27
err138
errOAAI
errRolando, Justin C.; Jue, Erik; Barlow, Jacob T.; Ismagilov, Rustem F.
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Research Directions

No research directions
Co-authors
Cooperation Journals
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George M. Whitesides
H-index: 233 · Papers: 1.5K
E
Edward H. Sargent
H-index: 213 · Papers: 1.2K
C
Chad A. Mirkin
H-index: 183 · Papers: 1.7K
M
Mark A. Ratner
H-index: 140 · Papers: 1.3K
H
Howard A. Stone
H-index: 130 · Papers: 1.6K
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