logo
CanyamAI summaries for academic research
language
MobileMobile
  • Phone FeatureWeChat Mini Program
EnglishEnglish
noticeNotice
BlogBlog
delete
arrow
Back
T

Tomáš Pluskal

Czech Academy of Sciences

36H-index
110Paper Count
1.1WCitation Count
Published Papers 38
Publication Date
logo
A Miniaturized, High-Throughput Aqueous Solvent-Centric Method for Protein Solubility Screening
errBiochemistry
IF3
err2026-05-01
err0
errOAAI
errSvoboda, Adrian; Molineris, Marina; Tureckiova, Theodora; Hlouchova, Klara; Pluskal, Tomas; Hebra, Teo
errShare
errSave
Comparability of Liquid Chromatography Tandem Mass Spectrometry Analysis of Dissolved Organic Matter across Laboratories
errEnvironmental Science & Technology
IF11.3
err2026-02-06
err0
errOAAI
errJarmo-Charles Kalinski; Bruno Ruiz Brandão da Costa; Tilman Schramm; Lance R. Buckett; Laura T. Carlson; Nicole R. Coffey; Tito Damiani; Elias Dechent; Yasin El Abiead; Steffen Heuckeroth; Elaine K. Jennings; Jan Kaesler; Naomi L. Stock; Alice M. Orme; Ralph R. Torres; Sara Trojahn; Helen L. Whelton; Yingfei Yan; Allegra T. Aron; Rene M. Boiteau; Ian D. Bull; Pieter C. Dorrestein; Duc Huy Dang; Richard P. Evershed; Marta Gledhill; Gerd Gleixner; Andreas F. Haas; Martin Hansen; Tilmann Harder; Ellen C. Hopmans; Anitra E. Ingalls; Uwe Karst; William Kew; Melissa Kido Soule; Boris P. Koch; Elizabeth B. Kujawinski; Oliver J. Lechtenfeld; Krista Longnecker; Tomáš Pluskal; Georg Pohnert; Zachary C. Redman; Albert Rivas-Ubach; Philippe Schmitt-Kopplin; Gabriel Singer; Jan Tebben; Patrick L. Tomco; Nicholas D. Ward; Lihini I. Aluwihare; Carsten Simon; Jeffrey Hawkes; Daniel Petras
errShare
errSave
Using structured libraries, selection, and machine learning to rapidly explore the sequence space of a fluorescent deoxyribozyme
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
PREAI
errKurfurst, Jaroslav; Volek, Martin; Samusevich, Raman; Pluskal, Tomas; Curtis, Edward A.
errShare
errSave
A resource to empirically establish drug exposure records directly from untargeted metabolomics data
errNature Communications
IF15.7
err2025-12-09
err0
errOAAI
errHaoqi Nina Zhao; Kine Eide Kvitne; Corinna Brungs; Siddharth Mohan; Vincent Charron-Lamoureux; Wout Bittremieux; Runbang Tang; Robin Schmid; Santosh Lamichhane; Shipei Xing; Yasin El Abiead; Mohammadsobhan S. Andalibi; Helena Mannochio-Russo; Madison Ambre; Nicole E. Avalon; MacKenzie Bryant; Lindsey A. Burnett; Andrés Mauricio Caraballo-Rodríguez; Martin Casas Maya; Loryn Chin; Lluís Corominas; Ronald J. Ellis; Donald Franklin; Sagan Girod; Paulo Wender P. Gomes; Lauren Hansen; Robert K. Heaton; Jennifer E. Iudicello; Alan K. Jarmusch; Lora Khatib; Scott Letendre; Sarolt Magyari; Daniel McDonald; Ipsita Mohanty; Andrés Cumsille; David J. Moore; Prajit Rajkumar; Dylan H. Ross; Harshada Sapre; Mohammad Reza Zare Shahneh; Ruben Gil-Solsona; Sydney P. Thomas; Caitlin Tribelhorn; Helena M. Tubb; Corinn Walker; Crystal X. Wang; Jasmine Zemlin; Simone Zuffa; David S. Wishart; Pablo Gago-Ferrero; Rima Kaddurah-Daouk; Mingxun Wang; Manuela Raffatellu; Karsten Zengler; Tomáš Pluskal; Libin Xu; Rob Knight; Shirley M. Tsunoda; Pieter C. Dorrestein
errShare
errSave
MARTS-DB: a database of mechanisms and reactions of terpene synthases
errBMC Bioinformatics
IF3.3
err2025-12-08
err0
errOAAI
errMartin Engst; Martin Brokeš; Tereza Čalounová; Raman Samusevich; Roman Bushuiev; Anton Bushuiev; Ratthachat Chatpatanasiri; Adéla Tajovská; Safa Mert Akmeşe; Milana Perković; Matouš Soldát; Josef Sivic; Tomáš Pluskal
errShare
errSave
MSnLib: efficient generation of open multi-stage fragmentation mass spectral libraries
errNature Methods
IF32.1
err2025-09-15
err0
errOAAI
errCorinna Brungs; Robin Schmid; Steffen Heuckeroth; Aninda Mazumdar; Matúš Drexler; Pavel Šácha; Pieter C. Dorrestein; Daniel Petras; Louis-Felix Nothias; Václav Veverka; Radim Nencka; Zdeněk Kameník; Tomáš Pluskal
errShare
errSave
Author Correction: A universal language for finding mass spectrometry data patterns
errNature Methods
IF32.1
err2025-08-08
err0
errOAAI
errTito Damiani; Alan K. Jarmusch; Allegra T. Aron; Daniel Petras; Vanessa V. Phelan; Haoqi Nina Zhao; Wout Bittremieux; Deepa D. Acharya; Mohammed M. A. Ahmed; Anelize Bauermeister; Matthew J. Bertin; Paul D. Boudreau; Ricardo M. Borges; Benjamin P. Bowen; Christopher J. Brown; Fernanda O. Chagas; Kenneth D. Clevenger; Mario S. P. Correia; William J. Crandall; Max Crüsemann; Eoin Fahy; Oliver Fiehn; Neha Garg; William H. Gerwick; Jeffrey R. Gilbert; Daniel Globisch; Paulo Wender P. Gomes; Steffen Heuckeroth; C. Andrew James; Scott A. Jarmusch; Sarvar A. Kakhkhorov; Kyo Bin Kang; Nikolas Kessler; Roland D. Kersten; Hyunwoo Kim; Riley D. Kirk; Oliver Kohlbacher; Eftychia E. Kontou; Ken Liu; Itzel Lizama-Chamu; Gordon T. Luu; Tal Luzzatto Knaan; Helena Mannochio-Russo; Michael T. Marty; Yuki Matsuzawa; Andrew C. McAvoy; Laura-Isobel McCall; Osama G. Mohamed; Omri Nahor; Heiko Neuweger; Timo H. J. Niedermeyer; Kozo Nishida; Trent R. Northen; Kirsten E. Overdahl; Johannes Rainer; Raphael Reher; Elys Rodriguez; Timo T. Sachsenberg; Laura M. Sanchez; Robin Schmid; Cole Stevens; Shankar Subramaniam; Zhenyu Tian; Ashootosh Tripathi; Hiroshi Tsugawa; Justin J. J. van der Hooft; Andrea Vicini; Axel Walter; Tilmann Weber; Quanbo Xiong; Tao Xu; Tomáš Pluskal; Pieter C. Dorrestein; Mingxun Wang
errShare
errSave
Bacterial Fluorinase FIA1 and Evolutionarily Related, Lysine-free StDUF62 Show Distinct Diastereoselectivity and Salt Sensitivity
errACS OMEGA
IF4.3
err2025-05-15
err0
errOAAI
errTekel, A; Orságh, M; Dracínsky, M; Pluskal, T
errShare
errSave
Computational metabolomics reveals overlooked chemodiversity of alkaloid scaffolds in Piper fimbriulatum
errPLANT JOURNAL
IF5.7
err2025-03-01
err0
errOAAI
errDamiani, Tito; Smith, Joshua; Hebra, Teo; Perkovic, Milana; Cicak, Marijo; Kadlecova, Alzbeta; Rybka, Vlastimil; Dracinsky, Martin; Pluskal, Tomas
errShare
errSave
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
errNATURE PROTOCOLS
IF16
err2024-09-20
err2
PREAI
errShah, Abzer K. Pakkir; Walter, Axel; Ottosson, Filip; Russo, Francesco; Navarro-Diaz, Marcelo; Boldt, Judith; Kalinski, Jarmo-Charles J.; Kontou, Eftychia Eva; Elofson, James; Polyzois, Alexandros; Gonzalez-Marin, Carolina; Farrell, Shane; Aggerbeck, Marie R.; Pruksatrakul, Thapanee; Chan, Nathan; Wang, Yunshu; Poechhacker, Magdalena; Brungs, Corinna; Camara, Beatriz; Caraballo-Rodriguez, Andres Mauricio; Cumsille, Andres; de Oliveira, Fernanda; Duehrkop, Kai; El Abiead, Yasin; Geibel, Christian; Graves, Lana G.; Hansen, Martin; Heuckeroth, Steffen; Knoblauch, Simon; Kostenko, Anastasiia; Kuijpers, Mirte C. M.; Mildau, Kevin; Papadopoulos Lambidis, Stilianos; Gomes, Paulo Wender Portal; Schramm, Tilman; Steuer-Lodd, Karoline; Stincone, Paolo; Tayyab, Sibgha; Vitale, Giovanni Andrea; Wagner, Berenike C.; Xing, Shipei; Yazzie, Marquis T.; Zuffa, Simone; de Kruijff, Martinus; Beemelmanns, Christine; Link, Hannes; Mayer, Christoph; van der Hooft, Justin J. J.; Damiani, Tito; Pluskal, Tomas; Dorrestein, Pieter; Stanstrup, Jan; Schmid, Robin; Wang, Mingxun; Aron, Allegra; Ernst, Madeleine; Petras, Daniel
errShare
errSave
Reproducible mass spectrometry data processing and compound annotation in MZmine 3
errNATURE PROTOCOLS
IF16
err2024-05-20
err6
PREAI
errHeuckeroth, Steffen; Damiani, Tito; Smirnov, Aleksandr; Mokshyna, Olena; Brungs, Corinna; Korf, Ansgar; Smith, Joshua David; Stincone, Paolo; Dreolin, Nicola; Nothias, Louis-Felix; Hyoetylaeinen, Tuulia; Oresic, Matej; Karst, Uwe; Dorrestein, Pieter C.; Petras, Daniel; Du, Xiuxia; van der Hooft, Justin J. J.; Schmid, Robin; Pluskal, Tomas
errShare
errSave
POMBOX: A Fission Yeast Cloning Toolkit for Molecular and Synthetic Biology
errACS SYNTHETIC BIOLOGY
IF3.9
err2023-11-22
err3
errOAAI
errHebra, Teo; Smrckova, Helena; Elkatmis, Busra; Prevorovsky, Martin; Pluskal, Tomas
errShare
errSave
Machine Learning-Guided Protein Engineering
errACS CATALYSIS
IF13.1
err2023-10-13
err50
errOAAI
errKouba, Petr; Kohout, Pavel; Haddadi, Faraneh; Bushuiev, Anton; Samusevich, Raman; Sedlar, Jiri; Damborsky, Jiri; Pluskal, Tomas; Sivic, Josef; Mazurenko, Stanislav
errShare
errSave
Integrative analysis of multimodal mass spectrometry data in MZmine 3
errNATURE BIOTECHNOLOGY
IF41.7
err2023-03-01
err276
errOAAI
errSchmid, Robin; Heuckeroth, Steffen; Korf, Ansgar; Smirnov, Aleksandr; Myers, Owen; Dyrlund, Thomas S.; Bushuiev, Roman; Murray, Kevin J.; Hoffmann, Nils; Lu, Miaoshan; Sarvepalli, Abinesh; Zhang, Zheng; Fleischauer, Markus; Duehrkop, Kai; Wesner, Mark; Hoogstra, Shawn J.; Rudt, Edward; Mokshyna, Olena; Brungs, Corinna; Ponomarov, Kirill; Mutabdzija, Lana; Damiani, Tito; Pudney, Chris J.; Earll, Mark; Helmer, Patrick O.; Fallon, Timothy R.; Schulze, Tobias; Rivas-Ubach, Albert; Bilbao, Aivett; Richter, Henning; Nothias, Louis-Felix; Wang, Mingxun; Oresic, Matej; Weng, Jing-Ke; Boecker, Sebastian; Jeibmann, Astrid; Hayen, Heiko; Karst, Uwe; Dorrestein, Pieter C.; Petras, Daniel; Du, Xiuxia; Pluskal, Tomas
errShare
errSave
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions (vol 95, pg 287, 2023)
errANALYTICAL CHEMISTRY
IF6.7
err2023-02-02
err0
errOAAI
errDamiani, Tito; Bonciarelli, Stefano; Thallinger, Gerhard G.; Koehler, Nikolai; Krettler, Christoph A.; Salihoglu, Arif K.; Korf, Ansgar; Pauling, Josch K.; Pluskal, Tomas; Ni, Zhixu; Goracci, Laura
errShare
errSave
Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions
errANALYTICAL CHEMISTRY
IF6.7
err2023-01-10
err12
errOAAI
errDamiani, Tito; Bonciarelli, Stefano; Thallinger, Gerhard G.; Koehler, Nikolai; Krettler, Christoph A.; Salihoglu, Arif K.; Korf, Ansgar; Pauling, Josch K.; Pluskal, Tomas; Ni, Zhixu; Goracci, Laura
errShare
errSave
Guiding the choice of informatics software and tools for lipidomics research applications
errNATURE METHODS
IF32.1
err2022-12-21
err32
errOAAI
errNi, Zhixu; Wolk, Michele; Jukes, Geoff; Espinosa, Karla Mendivelso; Ahrends, Robert; Aimo, Lucila; Alvarez-Jarreta, Jorge; Andrews, Simon; Andrews, Robert; Bridge, Alan; Clair, Geremy C.; Conroy, Matthew J.; Fahy, Eoin; Gaud, Caroline; Goracci, Laura; Hartler, Juergen; Hoffmann, Nils; Kopczyinki, Dominik; Korf, Ansgar; Lopez-Clavijo, Andrea F.; Malik, Adnan; Ackerman, Jacobo Miranda; Molenaar, Martijn R.; O'Donovan, Claire; Pluskal, Tomas; Shevchenko, Andrej; Slenter, Denise; Siuzdak, Gary; Kutmon, Martina; Tsugawa, Hiroshi; Willighagen, Egon L.; Xia, Jianguo; O'Donnell, Valerie B.; Fedorova, Maria
errShare
errSave
Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment
errNATURE COMMUNICATIONS
IF15.7
err2021-06-22
err138
errOAAI
errSchmid, Robin; Petras, Daniel; Nothias, Louis-Felix; Wang, Mingxun; Aron, Allegra T.; Jagels, Annika; Tsugawa, Hiroshi; Rainer, Johannes; Garcia-Aloy, Mar; Duhrkop, Kai; Korf, Ansgar; Pluskal, Tomas; Kamenik, Zdenek; Jarmusch, Alan K.; Caraballo-Rodriguez, Andres Mauricio; Weldon, Kelly C.; Nothias-Esposito, Melissa; Aksenov, Alexander A.; Bauermeister, Anelize; Orio, Andrea Albarracin; Grundmann, Carlismari O.; Vargas, Fernando; Koester, Irina; Gauglitz, Julia M.; Gentry, Emily C.; Hovelmann, Yannick; Kalinina, Svetlana A.; Pendergraft, Matthew A.; Panitchpakdi, Morgan; Tehan, Richard; Le Gouellec, Audrey; Aleti, Gajender; Russo, Helena Mannochio; Arndt, Birgit; Hubner, Florian; Hayen, Heiko; Zhi, Hui; Raffatellu, Manuela; Prather, Kimberly A.; Aluwihare, Lihini, I; Bocker, Sebastian; McPhail, Kerry L.; Humpf, Hans-Ulrich; Karst, Uwe; Dorrestein, Pieter C.
errShare
errSave
Feature-based molecular networking in the GNPS analysis environment
errNATURE METHODS
IF32.1
err2020-08-24
err766
errOAAI
errNothias, Louis-Felix; Petras, Daniel; Schmid, Robin; Duehrkop, Kai; Rainer, Johannes; Sarvepalli, Abinesh; Protsyuk, Ivan; Ernst, Madeleine; Tsugawa, Hiroshi; Fleischauer, Markus; Aicheler, Fabian; Aksenov, Alexander A.; Alka, Oliver; Allard, Pierre-Marie; Barsch, Aiko; Cachet, Xavier; Caraballo-Rodriguez, Andres Mauricio; Da Silva, Ricardo R.; Dang, Tam; Garg, Neha; Gauglitz, Julia M.; Gurevich, Alexey; Isaac, Giorgis; Jarmusch, Alan K.; Kamenik, Zdenek; Kang, Kyo Bin; Kessler, Nikolas; Koester, Irina; Korf, Ansgar; Le Gouellec, Audrey; Ludwig, Marcus; Martin H., Christian; McCall, Laura-Isobel; McSayles, Jonathan; Meyer, Sven W.; Mohimani, Hosein; Morsy, Mustafa; Moyne, Oriane; Neumann, Steffen; Neuweger, Heiko; Nguyen, Ngoc Hung; Nothias-Esposito, Melissa; Paolini, Julien; Phelan, Vanessa V.; Pluskal, Tomas; Quinn, Robert A.; Rogers, Simon; Shrestha, Bindesh; Tripathi, Anupriya; van der Hooft, Justin J. J.; Vargas, Fernando; Weldon, Kelly C.; Witting, Michael; Yang, Heejung; Zhang, Zheng; Zubeil, Florian; Kohlbacher, Oliver; Boecker, Sebastian; Alexandrov, Theodore; Bandeira, Nuno; Wang, Mingxun; Dorrestein, Pieter C.
errShare
errSave
The chloroalkaloid (-)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants
errNATURE COMMUNICATIONS
IF15.7
err2020-04-20
err42
errOAAI
errKim, Colin Y.; Mitchell, Andrew J.; Glinkerman, Christopher M.; Li, Fu-Shuang; Pluskal, Tomas; Weng, Jing-Ke
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
R
Rob Knight
H-index: 255 · Papers: 1.8K
D
David S. Wishart
H-index: 140 · Papers: 828
O
Oliver Fiehn
H-index: 123 · Papers: 907
P
Pieter C. Dorrestein
H-index: 122 · Papers: 872
M
Makoto Fujita
H-index: 119 · Papers: 1.1K
View more