Kyle Bittinger - Publications, H-index & Citations

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Kyle Bittinger

wellcome trust sanger institute

68H-index

329Paper Count

9.3WCitation Count

Published Papers 122

Publication Date

Glucuronidation metabolomic fingerprinting to map host-microbe metabolism

Nature Communications

IF15.7

2026-05-20

OAAI

Nina R. Boyle; Josh J. Sekela; Mingxun Wang; Helena Mannochio-Russo; Jeong Joo Pyo; Min Soo Kim; Shuchang Tian; Imhoi Koo; Elliot S. Friedman; Ceylan Tanes; Mallappa Anitha; Yuan Tian; Ethan W. Morgan; Iain A. Murray; Joseph P. Zackular; Kyle Bittinger; James D. Lewis; Gary H. Perdew; Gary D. Wu; Babette S. Zemel; Pieter C. Dorrestein; Jordan E. Bisanz; Matthew R. Redinbo; Andrew D. Patterson

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Rapid microbiome restructuring associated with medical exposure in remote Amazonian Indigenous communities

Cell Reports

IF6.9

2026-05-20

OAAI

Haipeng Sun; Oscar Noya-Alarcon; Jincheng Wang; Scott G. Daniel; Kyle Bittinger; Wessam Mohamed; Pauline D. Scanlan; Charvi Shah; Tanima Kundu; Martin J. Blaser; Noel T. Mueller; Orlana Lander; Mariapia Bevilaqua; Daniela Vargas Robles; Monica Contreras; Maria G. Dominguez-Bello

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Contribution of nosocomial transmission to Klebsiella pneumoniae neonatal sepsis in Africa and South Asia: An observational study of infection clusters inferred from pathogen genomics and temporal data

PLOS Medicine

IF9.9

2026-05-01

PREAI

Odih, Erkison Ewomazino; Abdulahi, Jabir A.; Amulele, Anne V.; Bates, Matthew; Heinz, Eva; Hu, Weiming; Jain, Kajal; Magobo, Rindidzani; Olwagen, Courtney P.; Tembo, John M.; Sonda, Tolbert; Strysko, Jonathan; Tigoi, Caroline C.; Bittinger, Kyle; Cornick, Jennifer; Foster-Nyarko, Ebenezer; Gumbi, Wilson; Jones, Steven M.; Musyani, Chileshe L.; McGann, Carolyn M.; Moustafa, Ahmed M.; Musicha, Patrick; Mwansa, James C. L.; Ndumba, Moreka L.; Stanton, Thomas D.; Omuoyo, Donwilliams O.; Pearse, Oliver; Phillips, Laura T.; Planet, Paul J.; Rodrigues, Charlene M. C.; Secka, Fatou; Sands, Kirsty; Theiller, Erin; Zuza, Allan M.; Basu, Sulagna; Chan, Grace J.; Iregbu, Kenneth C.; Mazarati, Jean-Baptiste; Alemayehu, Semaria Solomon; Walsh, Timothy R.; Zahra, Rabaab; Dramowski, Angela; Fwoloshi, Sombo; Labi, Appiah-Korang; Madrid, Lola; Obeng-Nkrumah, Noah; Ojok, David; Wadugu, Boaz D.; Whitelaw, Andrew C.; Bhargava, Anudita; Jindal, Atul; Agarwal, Ramesh K.; Aiken, Alexander M.; Berkley, James A.; Coffin, Susan E.; Feasey, Nicholas A.; Govender, Nelesh P.; Hamer, Davidson H.; Madhi, Shabir A.; Sankar, Mari Jeeva; Wyres, Kelly L.; Holt, Kathryn E.

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Effect of surgical antimicrobial prophylaxis duration for colic surgery on complications and resistome

EQUINE VETERINARY JOURNAL

IF2.2

2025-12-01

OAAI

Southwood, Louise L.; Long, Alicia; Perez, Jairo; Daniel, Scott; Bittinger, Kyle; Aitken, Maia; Redding, Laurel

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Baseline intestinal microbiota composition influences response to a real-world dietary fiber intervention

npj Biofilms and Microbiomes

IF9.2

2025-11-06

OAAI

Fabiana A. Hoffmann Sardá; Eliana B. Giuntini; Aline Oliveira; Gabriela S. Souza; Samira B. R. Prado; Carla R. Taddei; Carmen C. Tadini; Kyle Bittinger; Frederic D. Bushman; Elizabete W. Menezes; Christian Hoffmann

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Distinguishing diet- and microbe-derived metabolites in the human gut

Microbiome

IF12.7

2025-10-17

OAAI

Ceylan Tanes; Weiming Hu; Elliot Friedman; Aaron Hecht; Scott Daniel; Clary Clish; James D. Lewis; Gary D. Wu; Kyle Bittinger

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Developing Predictive Models for Periodontitis Progression Using Artificial Intelligence: A Longitudinal Cohort Study

Journal of Clinical Periodontology

IF6.8

2025-08-19

OAAI

Camila Pinheiro Furquim; Lannawill Caruth; Ganesh Chandrasekaran; Andrew Cucchiara; Michael J. Kallan; Lynn Martin; Magda Feres; Kyle Bittinger; Kimon Divaris; Joseph Glessner; Alpdogan Kantarci; William Giannobile; Shefali Setia Verma; Flavia Teles

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Dietary Fiber Modulates the Window of Susceptibility to Clostridioides difficile Infection

Gastroenterology

IF25.1

2025-05-16

PREAI

Katharine K. Hewlett; Amanda PeBenito; Aaron L. Hecht; Connor Tiffany; Ceylan Tanes; Rochelle C. Glover; Jibraan A. Fawad; Elliot S. Friedman; James C. Reynolds; Kyle Bittinger; James D. Lewis; Gary D. Wu; Nitin K. Ahuja; Joseph P. Zackular

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Goblet Cell Loss Linked to NOD2 and Secondary Resection in Crohn’s Disease is Induced by Dysbiosis and Epithelial MyD88

Cellular and Molecular Gastroenterology and Hepatology

IF7.4

2025-05-14

OAAI

Serre-Yu Wong; Maria Manuela Estevinho; Thomas Heaney; Allison A. Marshall; Elisabeth Giselbrecht; Scott G. Daniel; Chaoting Zhou; Adriana Rosas-Villegas; Kyung Ku Jang; Hairu Yang; Huaibin Mabel Ko; John D. Paulson; Yi Ding; Kyle Bittinger; Judy H. Cho; James D. Lewis; Deepshika Ramanan; Ken Cadwell

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Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice

NATURE MICROBIOLOGY

IF19.4

2025-03-31

PREAI

Litichevskiy, Lev; Considine, Maya; Gill, Jasleen; Shandar, Vasuprada; Cox, Timothy O.; Descamps, Helene C.; Wright, Kevin M.; Amses, Kevin R.; Dohnalova, Lenka; Liou, Megan J.; Tetlak, Monika; Galindo-Fiallos, Mario R.; Wong, Andrea C.; Lundgren, Patrick; Kim, Junwon; Uhr, Giulia T.; Rahman, Ryan J.; Mason, Sydney; Merenstein, Carter; Bushman, Frederic D.; Raj, Anil; Harding, Fiona; Chen, Zhenghao; Prateek, G. V.; Mullis, Martin; Deighan, Andrew G.; Robinson, Laura; Tanes, Ceylan; Bittinger, Kyle; Chakraborty, Meenakshi; Bhatt, Ami S.; Li, Hongzhe; Barnett, Ian; Davenport, Emily R.; Broman, Karl W.; Levy, Maayan; Cohen, Robert L.; Botstein, David; Freund, Adam; Di Francesco, Andrea; Churchill, Gary A.; Li, Mingyao; Thaiss, Christoph A.

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Microbiota and metabolite-based prediction tool for colonic polyposis with and without a known genetic driver

GUT MICROBES

IF11

2025-03-11

OAAI

Bryson W. Katona; Ashutosh Shukla; Weiming Hu; Thomas Nyul; Christina Dudzik; Alex Arvanitis; Daniel Clay; Michaela Dungan; Marina Weber; Vincent Tu; Fuhua Hao; Shuheng Gan; Lillian Chau; Anna M. Buchner; Gary W. Falk; David L. Jaffe; Gregory Ginsberg; Suzette N. Palmer; Xiaowei Zhan; Andrew D. Patterson; Kyle Bittinger; Josephine Ni

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A pro-inflammatory diet is associated with growth and virulence of Escherichia coli in pediatric Crohn's disease

JOURNAL OF CROHNS & COLITIS

IF8.7

2025-01-31

PREAI

Breton, Jessica; Tu, Vincent; Tanes, Ceylan; Wilson, Naomi; Quinn, Ryan; Kachelries, Kelly; Friedman, Elliot S.; Bittinger, Kyle; Baldassano, Robert N.; Compher, Charlene; Albenberg, Lindsey

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Antibiotic exposure is associated with minimal gut microbiome perturbations in healthy term infants

MICROBIOME

IF12.7

2025-01-24

OAAI

Benitez, Alain J.; Tanes, Ceylan; Friedman, Elliot S.; Zackular, Joseph P.; Ford, Eileen; Gerber, Jeffrey S.; Derusso, Patricia A.; Kelly, Andrea; Li, Hongzhe; Elovitz, Michal A.; Wu, Gary D.; Zemel, Babette; Bittinger, Kyle

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Mucosal Microbiome Signatures Associated with Postoperative Endoscopic Recurrence in Paediatric Crohn's Disease

JOURNAL OF CROHNS & COLITIS

IF8.7

2025-01-22

PREAI

Breton, J.; Tanes, C.; Wilson, N.; Kachelries, K.; Bittinger, K.; Mattei, P.; Baldassano, R.

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Metal availability shapes early life microbial ecology and community succession

MBIO

IF4.7

2024-11-13

OAAI

Ocana, Joshua Soto; Friedman, Elliot S.; Keenan, Orlaith; Bayard, Nile U.; Ford, Eileen; Tanes, Ceylan; Munneke, Matthew J.; Beavers, William N.; Skaar, Eric P.; Bittinger, Kyle; Zemel, Babette S.; Wu, Gary D.; Zackular, Joseph P.

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A quantitative approach to measure and predict microbiome response to antibiotics

MSPHERE

IF3.1

2024-09-25

OAAI

Tu, Vincent; Ren, Yue; Tanes, Ceylan; Mukhopadhyay, Sagori; Daniel, Scott G.; Li, Hongzhe; Bittinger, Kyle

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Gingival Crevicular Fluid Biomarkers During Periodontitis Progression and After Periodontal Treatment

JOURNAL OF CLINICAL PERIODONTOLOGY

IF6.8

2024-09-15

OAAI

Teles, Flavia; Martin, Lynn; Patel, Michele; Hu, Weiming; Bittinger, Kyle; Kallan, Michael J.; Chandrasekaran, Ganesh; Cucchiara, Andrew J.; Giannobile, William V.; Stephens, Danielle; Kantarci, Alpdogan

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The evolutionarily ancient FOXA transcription factors shape the murine gut microbiome via control of epithelial glycosylation

DEVELOPMENTAL CELL

IF8.7

2024-08-01

PREAI

Swisa, Avital; Kieckhaefer, Julia; Daniel, Scott G.; El-Mekkoussi, Hilana; Kolev, Hannah M.; Tigue, Mark; Jin, Chunsheng; Assenmacher, Charles-Antoine; Dohnalova, Lenka; Thaiss, Christoph A.; Karlsson, Niclas G.; Bittinger, Kyle; Kaestner, Klaus H.

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Unassigning bacterial species for microbiome studies

MSYSTEMS

IF4.6

2024-07-23

OAAI

Tanes, Ceylan; Tu, Vincent; Daniel, Scott; Bittinger, Kyle

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Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf

ANIMAL MICROBIOME

IF4.4

2024-07-19

OAAI

Drake, Mary Jane; Daniel, Scott G.; Baker, Linda D.; Indugu, Nagaraju; Bittinger, Kyle; Dickens, Charlene; Zackular, Joseph P.; Pitta, Dipti; Redding, Laurel E.

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Research Directions