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B

Bin Zhang

massachusetts institute of technology

35H-index
212Paper Count
4.6KCitation Count
Published Papers 47
Publication Date
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NEAT-DNA: A Chemically Accurate; Sequence-Dependent Coarse-Grained Model for Large-Scale DNA Simulations
errJournal of Chemical Theory and Computation
IF5.5
err2026-03-24
err0
PREAI
errIvan Riveros; Bin Zhang
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Nucleosome condensate and linker DNA alter chromatin folding pathways and rates
errBiophysical Journal
IF3.1
err2025-11-27
err0
PREAI
errYunrui Qiu; Shuming Liu; Xingcheng Lin; Ilona Christy Unarta; Xuhui Huang; Bin Zhang
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Protein language model identifies disordered, conserved motifs implicated in phase separation
errELIFE
IF0
err2025-10-20
err0
PREAI
errZhang, Yumeng; Zheng, Jared; Zhang, Bin
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Sequence-Dependent Conformational Landscapes of Intrinsically Disordered Proteins Reveal Asymmetric Chain Compaction
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-10-01
err0
PREAI
errWang, Cong; Zhang, Bin
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errSave
Native nucleosomes intrinsically encode genome organization principles
errNATURE
IF48.5
err2025-05-07
err0
errOAAI
errPark, Sangwoo; Merino-Urteaga, Raquel; Karwacki-Neisius, Violetta; Carrizo, Gustavo Ezequiel; Athreya, Advait; Marin-Gonzalez, Alberto; Benning, Nils A.; Park, Jonghan; Mitchener, Michelle M.; Bhanu, Natarajan V.; Garcia, Benjamin A.; Zhang, Bin; Muir, Tom W.; Pearce, Erika L.
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A Novel Model for Cornea Power Shift in Eyes Wearing Orthokeratology Lenses With Different Back Optic Zone Diameters for Myopia Control
errINVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE
IF4.7
err2025-03-01
err0
errOAAI
errWang, Ting; Chen, Xiaoqin; Li, Mengdi; Bi, Hua; Yang, Xiaoyan; Sun, Muhan; Liu, Yue; Li, Lihua; Zhang, Bin
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errSave
Scaling Graph Neural Networks to Large Proteins
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2025-02-06
err0
errOAAI
errAiras, Justin; Zhang, Bin
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errSave
Nonspecific Yet Selective Interactions Contribute to Small Molecule Condensate Binding
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-11-13
err1
PREAI
errWang, Cong; Kilgore, Henry R.; Latham, Andrew P.; Zhang, Bin
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errSave
OpenNucleome for high-resolution nuclear structural and dynamical modeling
errELIFE
IF0
err2024-08-15
err0
errOAAI
errLao, Zhuohan; Kamat, Kartik D.; Jiang, Zhongling; Zhang, Bin
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errSave
Preserving condensate structure and composition by lowering sequence complexity
errBIOPHYSICAL JOURNAL
IF3.1
err2024-07-01
err1
errOAAI
errSood, Amogh; Zhang, Bin
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errSave
Explicit ion modeling predicts physicochemical interactions for chromatin organization
errELIFE
IF0
err2024-01-30
err7
errOAAI
errLin, Xingcheng; Zhang, Bin
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errSave
Transferable Implicit Solvation via Contrastive Learning of Graph Neural Networks
errACS CENTRAL SCIENCE
IF10.4
err2023-11-16
err5
errOAAI
errAiras, Justin; Ding, Xinqiang; Zhang, Bin
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errSave
Micropolarity governs the structural organization of biomolecular condensates
errNATURE CHEMICAL BIOLOGY
IF13.7
err2023-11-16
err16
errOAAI
errYe, Songtao; Latham, Andrew P.; Tang, Yuqi; Hsiung, Chia-Heng; Chen, Junlin; Luo, Feng; Liu, Yu; Zhang, Bin; Zhang, Xin
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errSave
Efficient Hi-C inversion facilitates chromatin folding mechanism discovery and structure prediction
errBIOPHYSICAL JOURNAL
IF3.1
err2023-09-01
err3
errOAAI
errSchuette, Greg; Ding, Xinqiang; Zhang, Bin
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Compartmentalization with nuclear landmarks yields random, yet precise, genome organization
errAUTOMATION IN CONSTRUCTION
IF11.5
err2023-04-01
err8
errOAAI
errKamat, Kartik; Lao, Zhuohan; Qi, Yifeng; Wang, Yuchuan; Ma, Jian; Zhang, Bin
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errSave
Molecular determinants for the layering and coarsening of biological condensates
errAGGREGATE
IF13.7
err2022-12-10
err7
errOAAI
errLatham, Andrew P.; Zhang, Bin
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errSave
Contrastive Learning of Coarse-Grained Force Fields
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2022-09-16
err16
errOAAI
errDing, Xinqiang; Zhang, Bin
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errSave
Chromatin fiber breaks into clutches under tension and crowding
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-08-27
err8
errOAAI
errLiu, Shuming; Lin, Xingcheng; Zhang, Bin
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errSave
Ligand-induced transmembrane conformational coupling in monomeric EGFR
errNATURE COMMUNICATIONS
IF15.7
err2022-07-06
err11
errOAAI
errSrinivasan, Shwetha; Regmi, Raju; Lin, Xingcheng; Dreyer, Courtney A.; Chen, Xuyan; Quinn, Steven D.; He, Wei; Coleman, Matthew A.; Carraway, Kermit L., III; Zhang, Bin; Schlau-Cohen, Gabriela S.
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errSave
3DGenBench: a web-server to benchmark computational models for 3D Genomics
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-05-25
err8
errOAAI
errBelokopytova, Polina; Viesna, Emil; Chilinski, Mateusz; Qi, Yifeng; Salari, Hossein; Di Stefano, Marco; Esposito, Andrea; Conte, Mattia; Chiariello, Andrea M.; Teif, Vladimir B.; Plewczynski, Dariusz; Zhang, Bin; Jost, Daniel; Fishman, Veniamin
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Research Directions

No research directions
Co-authors
Cooperation Journals
F
Fred H. Gage
H-index: 219 · Papers: 1.1K
J
John R. Yates
H-index: 188 · Papers: 1.5K
H
Howard Y. Chang
H-index: 162 · Papers: 736
R
Robert Tjian
H-index: 150 · Papers: 479
P
Pasko Rakić
H-index: 142 · Papers: 489
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