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M

Matteo Masetti

university of bologna

28H-index
93Paper Count
4.9KCitation Count
Published Papers 51
Publication Date
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Critical Assessment of a Structure-Based Pipeline for Targeting the Long Noncoding RNA MALAT1
errJournal of Chemical Information and Modeling
IF5.3
err2026-03-01
err0
errOAAI
errAguti, Riccardo; Bernetti, Mattia; Elisi, Gian Marco; Cavalli, Andrea; Masetti, Matteo
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Role of Water Models in Simulations of Ion Conduction in Potassium Channels
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2026-01-01
err0
PREAI
errBosio, Stefano; Gazzoni, Diego; Domene, Carmen; Masetti, Matteo; Furini, Simone
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Dissecting the RAD51–BRC4 Interaction Landscape through Integrative Molecular Simulations and Experimental Biophysics
errJournal of Chemical Information and Modeling
IF5.3
err2025-10-22
err0
errOAAI
errVeronica Bresciani; Francesco Rinaldi; Pedro Franco; Stefania Girotto; Andrea Cavalli; Julian D. Langer; Matteo Masetti; Mattia Bernetti
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PLUMED Tutorials: A collaborative, community-driven learning ecosystem
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2025-03-07
err1
PREAI
errTribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoen, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomas F. D.; Spiwok, Vojtech; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
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Probing allosteric communication with combined molecular dynamics simulations and network analysis
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2024-06-01
err3
errOAAI
errBernetti, Mattia; Bosio, Stefano; Bresciani, Veronica; Falchi, Federico; Masetti, Matteo
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Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-05-27
err0
PREAI
errBosio, Stefano; Bernetti, Mattia; Rocchia, Walter; Masetti, Matteo
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Fragment Merging, Growing, and Linking Identify New Trypanothione Reductase Inhibitors for Leishmaniasis
errJOURNAL OF MEDICINAL CHEMISTRY
IF6.8
err2024-01-02
err2
errOAAI
errExertier, Cecile; Salerno, Alessandra; Antonelli, Lorenzo; Fiorillo, Annarita; Ocello, Riccardo; Seghetti, Francesca; Caciolla, Jessica; Uliassi, Elisa; Masetti, Matteo; Fiorentino, Eleonora; Orsini, Stefania; Di Muccio, Trentina; Ilari, Andrea; Bolognesi, Maria Laura
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Potent Antioxidant and Anti-Tyrosinase Activity of Butein and Homobutein Probed by Molecular Kinetic and Mechanistic Studies
errANTIOXIDANTS
IF6.6
err2023-09-14
err3
errOAAI
errPan, Wenkai; Giovanardi, Ilaria; Sagynova, Tomiris; Cariola, Alice; Bresciani, Veronica; Masetti, Matteo; Valgimigli, Luca
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errSave
Integrated Approach Including Docking, MD Simulations, and Network Analysis Highlights the Action Mechanism of the Cardiac hERG Activator RPR260243
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-07-28
err2
errOAAI
errCosta, Flavio; Ocello, Riccardo; Guardiani, Carlo; Giacomello, Alberto; Masetti, Matteo
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Recent advancements in modeling and simulations of ion channels
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2022-11-22
err0
errOAAI
errFurini, Simone; Maragliano, Luca; Masetti, Matteo
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errSave
From Acid Activation Mechanisms of Proton Conduction to Design of Inhibitors of the M2 Proton Channel of Influenza A Virus
errFRONTIERS IN MOLECULAR BIOSCIENCES
IF4
err2022-01-14
err7
errOAAI
errAledavood, Elnaz; Selmi, Beatrice; Estarellas, Carolina; Masetti, Matteo; Luque, F. Javier
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errSave
Probing the transport of Ni(II) ions through the internal tunnels of the Helicobacter pylori UreDFG multimeric protein complex
errJOURNAL OF INORGANIC BIOCHEMISTRY
IF3.2
err2021-10-01
err3
PREAI
errMasetti, Matteo; Bertazzo, Martina; Recanatini, Maurizio; Ciurli, Stefano; Musiani, Francesco
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Ion Conduction Mechanism as a Fingerprint of Potassium Channels
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2021-07-29
err15
errOAAI
errDomene, Carmen; Ocello, Riccardo; Masetti, Matteo; Furini, Simone
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Targeting the JAK/STAT Pathway: A Combined Ligand- and Target-Based Approach
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2021-05-17
err6
errOAAI
errGalvez-Llompart, Maria; Ocello, Riccardo; Rullo, Laura; Stamatakos, Serena; Alessandrini, Irene; Zanni, Riccardo; Tunon, Inaki; Cavalli, Andrea; Candeletti, Sanzio; Masetti, Matteo; Romualdi, Patrizia; Recanatini, Maurizio
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Conduction and Gating Properties of the TRAAK Channel from Molecular Dynamics Simulations with Different Force Fields
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-12-09
err12
errOAAI
errOcello, Riccardo; Furini, Simone; Lugli, Francesca; Recanatini, Maurizio; Domene, Carmen; Masetti, Matteo
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Data-Driven Molecular Dynamics: A Multifaceted Challenge
errPHARMACEUTICALS
IF4.8
err2020-09-18
err23
errOAAI
errBernetti, Mattia; Bertazzo, Martina; Masetti, Matteo
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Targeting the Protein Tunnels of the Urease Accessory Complex: A Theoretical Investigation
errMOLECULES
IF4.6
err2020-06-24
err10
errOAAI
errMasetti, Matteo; Falchi, Federico; Gioia, Dario; Recanatini, Maurizio; Ciurli, Stefano; Musiani, Francesco
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Exploring Conformational Dynamics of the Extracellular Venus flytrap Domain of the GABAB Receptor: A Path-Metadynamics Study
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2020-04-01
err8
errOAAI
errEvenseth, Linn S. M.; Ocello, Riccardo; Gabrielsen, Mari; Masetti, Matteo; Recanatini, Maurizio; Sylte, Ingebrigt; Cavalli, Andrea
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An Integrated Markov State Model and Path Metadynamics Approach To Characterize Drug Binding Processes
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2019-08-22
err49
PREAI
errBernetti, Mattia; Masetti, Matteo; Recanatini, Maurizio; Amaro, Rommie E.; Cavalli, Andrea
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Promoting transparency and reproducibility in enhanced molecular simulations
errNATURE METHODS
IF32.1
err2019-07-30
err715
errOAAI
errBonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A.; Banas, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G.; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L.; Filizola, Marta; Fraser, James S.; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T.; Hocky, Glen M.; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E.; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; Lindorff-Larsen, Kresten; Lohr, Thomas; Marinelli, Fabrizio; Martin-Samos, Layla; Masetti, Matteo; Meyer, Ralf; Michaelides, Angelos; Molteni, Carla; Morishita, Tetsuya; Nava, Marco; Paissoni, Cristina; Papaleo, Elena; Parrinello, Michele; Pfaendtner, Jim; Piaggi, Pablo; Piccini, GiovanniMaria; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Provasi, Davide; Quigley, David; Raiteri, Paolo; Raniolo, Stefano; Rydzewski, Jakub; Salvalaglio, Matteo; Sosso, Gabriele Cesare; Spiwok, Vojtech; Sponer, Jiri; Swenson, David W. H.; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew
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Research Directions

No research directions
Co-authors
Cooperation Journals
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Michele Parrinello
H-index: 155 · Papers: 924
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Michele Vendruscolo
H-index: 118 · Papers: 1.1K
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Gregory A. Voth
H-index: 114 · Papers: 985
D
Daniele Piomelli
H-index: 112 · Papers: 620
J
Jiřı́ Šponer
H-index: 87 · Papers: 641
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