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J

Jennifer J. Knapp

university of waterloo

18H-index
52Paper Count
2.8KCitation Count
Published Papers 16
Publication Date
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Wastewater-Based Genomic Surveillance of SARS-CoV-2 Antiviral Resistance Determinants in Ontario: Towards a Scalable Framework for Population-Level Antiviral Resistance Monitoring
errViruses-Basel
IF3.5
err2026-08-30
err0
errOAAI
errOpeyemi U. Lawal; Valeria R. Parreira; Alyssa K. Overton; Jennifer J. Knapp; Richard Gibson; Eric J. Arts; Linkang Zhang; Fozia Rizvi; Melinda Precious; Trevor C. Charles; Lawrence Goodridge
errShare
errSave
Experimental assessment of AI-based interactome mapping
errNature Communications
IF15.7
err2026-04-04
err0
errOAAI
errLuke Lambourne; Anupama Yadav; Yang Wang; Alice Desbuleux; Dae-Kyum Kim; Florent Laval; Kerstin Spirohn-Fitzgerald; Tiziana Cafarelli; Carles Pons; István A. Kovács; Noor Jailkhani; Sadie Schlabach; David De Ridder; Katja Luck; Vladimir V. Botchkarev; Olivia Debnath; Wenting Bian; Yun Shen; Zhipeng Yang; Miles W. Mee; Mohamed Helmy; Yves Jacob; Irma Lemmens; Thomas Rolland; Gregory G. McClain; Atina G. Coté; Marinella Gebbia; Nishka Kishore; Jennifer J. Knapp; Joseph C. Mellor; Gonen Memisoglu; Jüri Reimand; Jan Tavernier; Michael E. Cusick; Quan Zhong; Patrick Aloy; Tong Hao; Benoit Charloteaux; Frederick P. Roth; Javier De Las Rivas; Pascal Falter-Braun; David E. Hill; Michael A. Calderwood; Jean-Claude Twizere; Marc Vidal
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errSave
Evaluation of sampling methods for genomic surveillance of SARS-CoV-2 variants in aircraft wastewater: advancing global early-warning systems for future pandemics
errFrontiers in Microbiology
IF4.5
err2025-11-27
err0
errOAAI
errOpeyemi U. Lawal; Valeria R. Parreira; Fozia Rizvi; Melinda Precious; Rebecca E. V. Anderson; Alyssa K. Overton; Jennifer J. Knapp; Brittany Maxwell; Steven Thomas; Marcos Zambrano; Chrystal Landgraff; Manon D. Fleury; Natalie C. Knox; Trevor C. Charles; Lawrence Goodridge
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errSave
The functional landscape of coding variation in the familial hypercholesterolemia gene LDLR
errScience
IF45.8
err2025-10-30
err0
PREAI
errDaniel R. Tabet; Atina G. Coté; Megan C. Lancaster; Jochen Weile; Ashyad Rayhan; Iosifina Fotiadou; Nishka Kishore; Roujia Li; Da Kuang; Jennifer J. Knapp; Carmela S. Carrero; Olivia Taverniti; Anna Axakova; Jack M. P. Castelli; Mohammad M. Islam; Shahin Sowlati-Hashjin; Aanshi Gandhi; Ranim Maaieh; Michael Garton; Kenneth Matreyek; Douglas M. Fowler; Mafalda Bourbon; Simon G. Pfisterer; Andrew M. Glazer; Brett M. Kroncke; Victoria N. Parikh; Euan A. Ashley; Joshua W. Knowles; Melina Claussnitzer; Elizabeth T. Cirulli; Robert A. Hegele; Dan M. Roden; Calum A. MacRae; Frederick P. Roth
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errSave
A comprehensive two-hybrid analysis to explore the Legionella pneumophila effector-effector interactome
errMSYSTEMS
IF4.6
err2024-12-17
err1
errOAAI
errMount, Harley O'Connor; Urbanus, Malene L.; Sheykhkarimli, Dayag; Cote, Atina G.; Laval, Florent; Coppin, Georges; Kishore, Nishka; Li, Roujia; Spirohn-Fitzgerald, Kerstin; Petersen, Morgan O.; Knapp, Jennifer J.; Kim, Dae-Kyum; Twizere, Jean-Claude; Calderwood, Michael A.; Vidal, Marc; Roth, Frederick P.; Ensminger, Alexander W.
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errSave
Genomic surveillance of Canadian airport wastewater samples allows early detection of emerging SARS-CoV-2 lineages
errSCIENTIFIC REPORTS
IF3.9
err2024-11-03
err0
errOAAI
errOverton, Alyssa K.; Knapp, Jennifer J.; Lawal, Opeyemi U.; Gibson, Richard; Fedynak, Anastasia A.; Adebiyi, Adebowale I.; Maxwell, Brittany; Cheng, Lydia; Bee, Carina; Qasim, Asim; Atanas, Kyle; Payne, Mark; Stuart, Rebecca; Fleury, Manon D.; Knox, Natalie C.; Nash, Delaney; Hungwe, Yemurayi C.; Prasla, Samran R.; Ho, Hannifer; Agboola, Simininuoluwa O.; Kwon, Su-Hyun; Naik, Shiv; Parreira, Valeria R.; Rizvi, Fozia; Precious, Melinda J.; Thomas, Steven; Zambrano, Marcos; Fang, Vixey; Gilliland, Elaine; Varia, Monali; Horn, Maureen; Landgraff, Chrystal; Arts, Eric J.; Goodridge, Lawrence; Becker, Devan; Charles, Trevor C.
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errSave
Reconstructing SARS-CoV-2 lineages from mixed wastewater sequencing data
errSCIENTIFIC REPORTS
IF3.9
err2024-08-31
err1
errOAAI
errEllmen, Isaac; Overton, Alyssa K.; Knapp, Jennifer J.; Nash, Delaney; Ho, Hannifer; Hungwe, Yemurayi; Prasla, Samran; Nissimov, Jozef I.; Charles, Trevor C.
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errSave
Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data
errMICROBIAL GENOMICS
IF4
err2024-05-24
err5
errOAAI
errSutcliffe, Steven G.; Kraemer, Susanne A.; Ellmen, Isaac; Knapp, Jennifer J.; Overton, Alyssa K.; Nash, Delaney; Nissimov, Jozef I.; Charles, Trevor C.; Dreifuss, David; Topolsky, Ivan; Baykal, Pelin I.; Fuhrmann, Lara; Jablonski, Kim P.; Beerenwinkel, Niko; Levy, Joshua I.; Olabode, Abayomi S.; Becker, Devan G.; Gugan, Gopi; Brintnell, Erin; Poon, Art F. Y.; Valieris, Renan; Drummond, Rodrigo D.; Defelicibus, Alexandre; Dias-Neto, Emmanuel; Rosales, Rafael A.; da Silva, Israel Tojal; Orfanou, Aspasia; Psomopoulos, Fotis; Pechlivanis, Nikolaos; Pipes, Lenore; Chen, Zihao; Baaijens, Jasmijn A.; Baym, Michael; Shapiro, B. Jesse
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errSave
A Novel Tiled Amplicon Sequencing Assay Targeting the Tomato Brown Rugose Fruit Virus (ToBRFV) Genome Reveals Widespread Distribution in Municipal Wastewater Treatment Systems in the Province of Ontario, Canada
errVIRUSES-BASEL
IF3.5
err2024-03-17
err5
errOAAI
errNash, Delaney; Ellmen, Isaac; Knapp, Jennifer J.; Menon, Ria; Overton, Alyssa K.; Cheng, Jiujun; Lynch, Michael D. J.; Nissimov, Jozef I.; Charles, Trevor C.
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errSave
Real-time evaluation of signal accuracy in wastewater surveillance of pathogens with high rates of mutation
errSCIENTIFIC REPORTS
IF3.9
err2024-02-14
err5
errOAAI
errThakali, Ocean; Mercier, Elisabeth; Eid, Walaa; Wellman, Martin; Brasset-Gorny, Julia; Overton, Alyssa K.; Knapp, Jennifer J.; Manuel, Douglas; Charles, Trevor C.; Goodridge, Lawrence; Arts, Eric J.; Poon, Art F. Y.; Brown, R. Stephen; Graber, Tyson E.; Delatolla, Robert; DeGroot, Christopher T.
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errSave
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
errNATURE COMMUNICATIONS
IF15.7
err2023-04-15
err10
errOAAI
errTang, Hong-Wen; Spirohn, Kerstin; Hu, Yanhui; Hao, Tong; Kovacs, Istvan A.; Gao, Yue; Binari, Richard; Yang-Zhou, Donghui; Wan, Kenneth H.; Bader, Joel S.; Balcha, Dawit; Bian, Wenting; Booth, Benjamin W.; Cote, Atina G.; de Rouck, Steffi; Desbuleux, Alice; Goh, Kah Yong; Kim, Dae-Kyum; Knapp, Jennifer J.; Lee, Wen Xing; Lemmens, Irma; Li, Cathleen; Li, Mian; Li, Roujia; Lim, Hyobin Julianne; Liu, Yifang; Luck, Katja; Markey, Dylan; Pollis, Carl; Rangarajan, Sudharshan; Rodiger, Jonathan; Schlabach, Sadie; Shen, Yun; Sheykhkarimli, Dayag; TeeKing, Bridget; Roth, Frederick P.; Tavernier, Jan; Calderwood, Michael A.; Hill, David E.; Celniker, Susan E.; Vidal, Marc; Perrimon, Norbert; Mohr, Stephanie E.
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errSave
A proteome-scale map of the SARS-CoV-2-human contactome
errNATURE BIOTECHNOLOGY
IF41.7
err2022-10-10
err31
errOAAI
errKim, Dae-Kyum; Weller, Benjamin; Lin, Chung-Wen; Sheykhkarimli, Dayag; Knapp, Jennifer J.; Dugied, Guillaume; Zanzoni, Andreas; Pons, Carles; Tofaute, Marie J.; Maseko, Sibusiso B.; Spirohn, Kerstin; Laval, Florent; Lambourne, Luke; Kishore, Nishka; Rayhan, Ashyad; Sauer, Mayra; Young, Veronika; Halder, Hridi; Marin-de la Rosa, Nora; Pogoutse, Oxana; Strobel, Alexandra; Schwehn, Patrick; Li, Roujia; Rothballer, Simin T.; Altmann, Melina; Cassonnet, Patricia; Cote, Atina G.; Vergara, Lena Elorduy; Hazelwood, Isaiah; Liu, Betty B.; Nguyen, Maria; Pandiarajan, Ramakrishnan; Dohai, Bushra; Coloma, Patricia A. Rodriguez; Poirson, Juline; Giuliana, Paolo; Willems, Luc; Taipale, Mikko; Jacob, Yves; Hao, Tong; Hill, David E.; Brun, Christine; Twizere, Jean-Claude; Krappmann, Daniel; Heinig, Matthias; Falter, Claudia; Aloy, Patrick; Demeret, Caroline; Vidal, Marc; Calderwood, Michael A.; Roth, Frederick P.; Falter-Braun, Pascal
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errSave
A framework for exhaustively mapping functional missense variants
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2017-12-21
err124
errOAAI
errWeile, Jochen; Sun, Song; Cote, Atina G.; Knapp, Jennifer; Verby, Marta; Mellor, Joseph C.; Wu, Yingzhou; Pons, Carles; Wong, Cassandra; van Lieshout, Natascha; Yang, Fan; Tasan, Murat; Tan, Guihong; Yang, Shan; Fowler, Douglas M.; Nussbaum, Robert; Bloom, Jesse D.; Vidal, Marc; Hill, David E.; Aloy, Patrick; Roth, Frederick P.
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errSave
Pooled-matrix protein interaction screens using Barcode Fusion Genetics
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2016-04-23
err94
errOAAI
errYachie, Nozomu; Petsalaki, Evangelia; Mellor, Joseph C.; Weile, Jochen; Jacob, Yves; Verby, Marta; Ozturk, Sedide B.; Li, Siyang; Cote, Atina G.; Mosca, Roberto; Knapp, Jennifer J.; Ko, Minjeong; Yu, Analyn; Gebbia, Marinella; Sahni, Nidhi; Yi, Song; Tyagi, Tanya; Sheykhkarimli, Dayag; Roth, Jonathan F.; Wong, Cassandra; Musa, Louai; Snider, Jamie; Liu, Yi-Chun; Yu, Haiyuan; Braun, Pascal; Stagljar, Igor; Hao, Tong; Calderwood, Michael A.; Pelletier, Laurence; Aloy, Patrick; Hill, David E.; Vidal, Marc; Roth, Frederick P.
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errSave
Host propagation permits extreme local adaptation in a social parasite of ants
errEcology Letters
IF7.9
err2006-08-14
err42
PREAI
errSchonrogge, K.; Gardner, M. G.; Elmes, G. W.; Napper, E. K. V.; Simcox, D. J.; Wardlaw, J. C.; Breen, J.; Barr, B.; Knapp, J. J.; Pickett, J. A.; Thomas, J. A.
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errSave
Chemical mimicry and host specificity in the butterfly Maculinea rebeli, a social parasite of Myrmica ant colonies
errPROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
IF3.5
err1999-07-22
err227
errOAAI
errAkino, T; Knapp, JJ; Thomas, JA; Elmes, GW
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
N
Norbert Perrimon
H-index: 154 · Papers: 867
D
Dan M. Roden
H-index: 147 · Papers: 1.5K
M
Marc Vidal
H-index: 123 · Papers: 399
R
Robert A. Hegele
H-index: 118 · Papers: 1.2K
L
L. Lambourne
H-index: 106 · Papers: 600
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