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The PanOryza pangene catalog of Asian cultivated rice Contreras-Moreira, Bruno; Sharma, Eshan; Saraf, Shradha; Naamati, Guy; Gupta, Parul; Elser, Justin; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Wei, Sharon; Olson, Andrew; Tsang, Ian; Lodha, Disha; Zhou, Yong; Yu, Zhichao; Zhao, Wen; Zhang, Jianwei; Amberkar, Sandeep; Sue-Ob, Kawinnat; Sun, Zhi; Martin, Maria; McNally, Kenneth L.; Ware, Doreen; Deutsch, Eric W.; Copetti, Dario; Wing, Rod A.; Jaiswal, Pankaj; Dyer, Sarah; Jones, Andrew R. Share Save
SorghumBase: a knowledgebase for sorghum genomics, phenomics, and stakeholder engagement Gladman, Nicholas; Olson, Andrew; Kumari, Sunita; Wei, Sharon; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Van Buren, Peter; Kumar, Vivek; Zhang, Lifang; Olson, Audra; Kim, Catherine; Braynen, Janeen; Hayes, Chad; Xin, Zhanguo; Klein, Robert; Rooney, William; Provart, Nicholas; Pasha, Asher; O'Meara, Abigail; Shakoor, Nadia; Michael, Todd P.; Harrison, Melanie; Ware, Doreen Share Save
Decoding nitrogen uptake efficiency in maize and sorghum: insights from comparative gene regulatory networks Braynen, Janeen; Zhang, Lifang; Kumari, Sunita; Olson, Andrew; Kumar, Vivek; Regulski, Michael; Liseron-monfils, Christophe; Gaudinier, Allison; Bagman, Anne-maarit; Abbitt, Shane; Frank, Mary J.; Shen, Bo; Kochian, Leon; Brady, Siobhan M.; Ware, Doreen Share Save
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research Olson, Andrew; Kumari, Sunita; Wei, Xuehong; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela karey; Kumar, Vivek; Van buren, Peter; Olson, Audra; Kim, Catherine; Braynen, Janeen; Zhang, Lifang; Dyer, Sarah; Alvarez-Jarreta, Jorge; Saraf, Shradha; Contreras-Moreira, Bruno; Naamati, Guy; Ernst, Christina; Papatheodorou, Irene; George, Nancy; Jaiswal, Pankaj; Naithani, Sushma; Gupta, Parul; Elser, Justin; D'eustachio, Peter; Assmann, Sarah M.; Ferrero-Serrano, Angel; Pasha, Asher; Provart, Nicholas; Gladman, Nicholas; Ware, Doreen Share Save
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Expression Atlas in 2026: enabling FAIR and open expression data through community collaboration and integration Madrigal, Pedro; Thanki, Anil S.; Fexova, Silvie; Yu, Iris D.; Chatzigeorgiou, Arsenios; Zucchi, Ida; Marugan Calles, Jose C.; Vilmovsky, Liora; Khen, Amnon; Zhao, Lingyun; Erdos, Karoly; Kurri, Sandeep R.; Selvakumar, Sandeep; Kumbham, Upendra; Prakash, Ananth; Wang, Shengbo; Green, Andrew; Ribas, Carlos Eduardo; Sweeney, Blake; Alegbe, Tobi; Suveges, Daniel; Hemrom, Anmol; Gomez Gutierrez, David E.; Insua, Santiago; Jeffryes, Matt; Pearce, Matt; Basutkar, Prasad; Kaforou, Myrsini; Cunnington, Aubrey; Levin, Michael; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Roper, Katja; Brown, Nicholas H.; Hu, Yanhui; Perrimon, Norbert; Papatheodorou, Irene; Brazma, Alvis; Hermjakob, Henning; Harrison, Melissa; Ocana, David; Ochoa, David; McDonagh, Ellen M.; Bateman, Alex; Keane, Thomas; Vizcaino, Juan Antonio; Ernst, Christina Share Save
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GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data Wei, Sharon; Chougule, Kapeel; Olson, Andrew; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Kumar, Vivek; Kumari, Sunita; Zhang, Lifang; Olson, Audra; Kim, Catherine; Gladman, Nick; Ware, Doreen Share Save
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing Koren, Sergey; Bao, Zhigui; Guarracino, Andrea; Ou, Shujun; Goodwin, Sara; Jenike, Katharine M.; Lucas, Julian; Mcnulty, Brandy; Park, Jimin; Rautiainen, Mikko; Rhie, Arang; Roelofs, Dick; Schneiders, Harrie; Vrijenhoek, Ilse; Nijbroek, Koen; Nordesjo, Olle; Nurk, Sergey; Vella, Mike; Lawrence, Katherine R.; Ware, Doreen; Schatz, Michael C.; Garrison, Erik; Huang, Sanwen; Mccombie, William Richard; Miga, Karen H.; Wittenberg, Alexander H. J.; Phillippy, Adam M. Share Save
Functional diversification within the heme-binding split-barrel family Grosjean, Nicolas; Zhang, Lifang; Kumaran, Desigan; Xie, Meng; Fahey, Audrey; Santiago, Kassandra; Hu, Fangle; Regulski, Michael; Blaby, Ian K.; Ware, Doreen; Blaby-Haas, Crysten E. Share Save
High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436 Wang, Bo; Chougule, Kapeel; Jiao, Yinping; Olson, Andrew; Kumar, Vivek; Gladman, Nicholas; Huang, Jian; Llaca, Victor; Fengler, Kevin; Wei, Xuehong; Wang, Liya; Wang, Xiaofei; Regulski, Michael; Drenkow, Jorg; Gingeras, Thomas; Hayes, Chad; Armstrong, J. Scott; Huang, Yinghua; Xin, Zhanguo; Ware, Doreen Share Save
A large sequenced mutant library - valuable reverse genetic resource that covers 98% of sorghum genes Jiao, Yinping; Nigam, Deepti; Barry, Kerrie; Daum, Chris; Yoshinaga, Yuko; Lipzen, Anna; Khan, Adil; Parasa, Sai-Praneeth; Wei, Sharon; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Dhiman, Pallavi; Burow, Gloria; Hayes, Chad; Chen, Junping; Brandizzi, Federica; Mortimer, Jenny; Ware, Doreen; Xin, Zhanguo Share Save
Expression Atlas update: insights from sequencing data at both bulk and single cell level George, Nancy; Fexova, Silvie; Fuentes, Alfonso Munoz; Madrigal, Pedro; Bi, Yalan; Iqbal, Haider; Kumbham, Upendra; Nolte, Nadja Francesca; Zhao, Lingyun; Thanki, Anil S.; Yu, Iris D.; Marugan Calles, Jose C.; Erdos, Karoly; Vilmovsky, Liora; Kurri, Sandeep R.; Vathrakokoili-Pournara, Anna; Osumi-Sutherland, David; Prakash, Ananth; Wang, Shengbo; Tello-Ruiz, Marcela K.; Kumari, Sunita; Ware, Doreen; Goutte-Gattat, Damien; Hu, Yanhui; Brown, Nick; Perrimon, Norbert; Vizcaino, Juan Antonio; Burdett, Tony; Teichmann, Sarah; Brazma, Alvis; Papatheodorou, Irene Share Save
Ensembl 2024 Harrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D. Share Save
Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis Zhang, Lifang; Braynen, Janeen; Fahey, Audrey; Chopra, Kriti; Cifani, Paolo; Tadesse, Dimiru; Regulski, Michael; Hu, Fangle; van Dam, Hubertus J. J.; Xie, Meng; Ware, Doreen; Blaby-Haas, Crysten E. Share Save
Engineering homoeologs provide a fine scale for quantitative traits in polyploid Lee, Eun Song; Heo, Jung; Bang, Woo Young; Chougule, Kapeel M.; Waminal, Nomar Espinosa; Hong, Nguyen Thi; Kim, Min Ji; Beak, Hong Kwan; Kim, Yong Jun; Priatama, Ryza A.; Jang, Ji In; Cha, Kang Il; Son, Seung Han; Rajendran, Sujeevan; Choo, Young-Kug; Bae, Jong Hyang; Kim, Chul Min; Lee, Young Koung; Bae, Sangsu; Jones, Jonathan D. G.; Sohn, Kee Hoon; Lee, Jiyoung; Kim, Hyun Hee; Hong, Jong Chan; Ware, Doreen; Kim, Keunhwa; Park, Soon Ju Share Save
The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding Shi, Xiaoya; Cao, Shuo; Wang, Xu; Huang, Siyang; Wang, Yue; Liu, Zhongjie; Liu, Wenwen; Leng, Xiangpeng; Peng, Yanling; Wang, Nan; Wang, Yiwen; Ma, Zhiyao; Xu, Xiaodong; Zhang, Fan; Xue, Hui; Zhong, Haixia; Wang, Yi; Zhang, Kekun; Velt, Amandine; Avia, Komlan; Holtgraewe, Daniela; Grimplet, Jerome; Matus, Jose Tomas; Ware, Doreen; Wu, Xinyu; Wang, Haibo; Liu, Chonghuai; Fang, Yuling; Rustenholz, Camille; Cheng, Zongming; Xiao, Hua; Zhou, Yongfeng Share Save
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice Zhou, Yong; Yu, Zhichao; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Rivera, Luis F.; Kathiresan, Nagarajan; Al-Bader, Noor; Mohammed, Nahed; Alsantely, Aseel; Mussurova, Saule; Santos, Joao; Thimma, Manjula; Troukhan, Maxim; Fornasiero, Alice; Green, Carl D.; Copetti, Dario; Kudrna, David; Llaca, Victor; Lorieux, Mathias; Zuccolo, Andrea; Ware, Doreen; McNally, Kenneth; Zhang, Jianwei; Wing, Rod A. Share Save
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