Not logged in ZW sex chromosome structure in Amborella trichopoda Carey, Sarah B.; Akoezbek, Laramie; Lovell, John T.; Jenkins, Jerry; Healey, Adam L.; Shu, Shengqiang; Grabowski, Paul; Yocca, Alan; Stewart, Ada; Jones, Teresa; Barry, Kerrie; Rajasekar, Shanmugam; Talag, Jayson; Scutt, Charlie; Lowry, Porter P.; Munzinger, Jerome; Knox, Eric B.; Soltis, Douglas E.; Soltis, Pamela S.; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James; Harkess, Alex Share Save
Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa Bird, Kevin A.; Brock, Jordan R.; Grabowski, Paul P.; Harder, Avril M.; Healy, Adam L.; Shu, Shengqiang; Barry, Kerrie; Boston, Loribeth; Daum, Christopher; Guo, Jie; Lipzen, Anna; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Lu, Chaofu; Comai, Luca; Mckay, John K.; Pires, J. Chris; Edger, Patrick P.; Lovell, John T.; Kliebenstein, Daniel J. Share Save
Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean Espina, Mary Jane C.; Lovell, John T.; Jenkins, Jerry; Shu, Shengqiang; Sreedasyam, Avinash; Jordan, Brandon D.; Webber, Jenell; Boston, LoriBeth; Bruna, Tomas; Talag, Jayson; Goodstein, David; Grimwood, Jane; Stacey, Gary; Cannon, Steven B.; Lorenz, Aaron J.; Schmutz, Jeremy; Stupar, Robert M. Share Save
Unlocking saponin biosynthesis in soapwort Jo, Seohyun; El-Demerdash, Amr; Owen, Charlotte; Srivastava, Vikas; Wu, Dewei; Kikuchi, Shingo; Reed, James; Hodgson, Hannah; Harkess, Alex; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Williams, Melissa; Boston, Lori-Beth; Lacchini, Elia; Qu, Tongtong; Goossens, Alain; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, Jim; Osbourn, Anne Share Save
Genome resources for three modern cotton lines guide future breeding efforts Sreedasyam, Avinash; Lovell, John T.; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W.; Plott, Christopher; Bryan, Kempton B.; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C.; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C.; Dever, Jane K.; Scheffler, Jodi A.; Pauli, Duke; Jenkins, Johnie N.; Mccarty, Jack C.; Williams, Melissa; Boston, Loribeth; Webber, Jenell; Udall, Joshua A.; Chen, Z. Jeffrey; Bourland, Fred; Stiller, Warwick N.; Saski, Christopher A.; Grimwood, Jane; Chee, Peng W.; Jones, Don C.; Schmutz, Jeremy Share Save
Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes Li, Cheng; Wickell, David; Kuo, Li-Yaung; Chen, Xueqing; Nie, Bao; Liao, Xuezhu; Peng, Dan; Ji, Jiaojiao; Jenkins, Jerry; Williams, Mellissa; Shu, Shengqiang; Plott, Christopher; Barry, Kerrie; Rajasekar, Shanmugam; Grimwood, Jane; Han, Xiaoxu; Sun, Shichao; Hou, Zhuangwei; He, Weijun; Dai, Guanhua; Sun, Cheng; Schmutz, Jeremy; Leebens-Mack, James H.; Li, Fay-Wei; Wang, Li Share Save
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Haplotype-resolved genome assembly of Populus tremula x P. alba reveals aspen-specific megabase satellite DNA Zhou, Ran; Jenkins, Jerry W.; Zeng, Yibing; Shu, Shengqiang; Jang, Hosung; Harding, Scott A.; Williams, Melissa; Plott, Christopher; Barry, Kerrie W.; Koriabine, Maxim; Amirebrahimi, Mojgan; Talag, Jayson; Rajasekar, Shanmugam; Grimwood, Jane; Schmitz, Robert J.; Dawe, R. Kelly; Schmutz, Jeremy; Tsai, Chung-Jui Share Save
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom Sreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy Share Save
A view of the pan-genome of domesticated Cowpea (Vigna unguiculata [L.] Walp.) Liang, Qihua; Munoz-Amatriain, Maria; Shu, Shengqiang; Lo, Sassoum; Wu, Xinyi; Carlson, Joseph W.; Davidson, Patrick; Goodstein, David M.; Phillips, Jeremy; Janis, Nadia M.; Lee, Elaine J.; Liang, Chenxi; Morrell, Peter L.; Farmer, Andrew D.; Xu, Pei; Close, Timothy J.; Lonardi, Stefano Share Save
Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics Healey, Adam L.; Piatkowski, Bryan; Lovell, John T.; Sreedasyam, Avinash; Carey, Sarah B.; Mamidi, Sujan; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Lawrence, Travis; Aguero, Blanka; Carrell, Alyssa A.; Nieto-Lugilde, Marta; Talag, Jayson; Duffy, Aaron; Jawdy, Sara; Carter, Kelsey R.; Boston, Lori-Beth; Jones, Teresa; Jaramillo-Chico, Juan; Harkess, Alex; Barry, Kerrie; Keymanesh, Keykhosrow; Bauer, Diane; Grimwood, Jane; Gunter, Lee; Schmutz, Jeremy; Weston, David J.; Shaw, A. Jonathan Share Save
The Chlamydomonas Genome Project, version 6: Reference assemblies for mating-type plus and minus strains reveal extensive structural mutation in the laboratory Craig, Rory J.; Gallaher, Sean D.; Shu, Shengqiang; Salome, Patrice A.; Jenkins, Jerry W.; Blaby-Haas, Crysten E.; Purvine, Samuel O.; O'Donnell, Samuel; Barry, Kerrie; Grimwood, Jane; Strenkert, Daniela; Kropat, Janette; Daum, Chris; Yoshinaga, Yuko; Goodstein, David M.; Vallon, Olivier; Schmutz, Jeremy; Merchant, Sabeeha S. Share Save
Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass Sun, Guangchao; Wase, Nishikant; Shu, Shengqiang; Jenkins, Jerry; Zhou, Bangjun; Torres-Rodriguez, J. Vladimir; Chen, Cindy; Sandor, Laura; Plott, Chris; Yoshinga, Yuko; Daum, Christopher; Qi, Peng; Barry, Kerrie; Lipzen, Anna; Berry, Luke; Pedersen, Connor; Gottilla, Thomas; Foltz, Ashley; Yu, Huihui; O'Malley, Ronan; Zhang, Chi; Devos, Katrien M.; Sigmon, Brandi; Yu, Bin; Obata, Toshihiro; Schmutz, Jeremy; Schnable, James C. Share Save
Multiple origins, one evolutionary trajectory: gradual evolution characterizes distinct lineages of allotetraploid Brachypodium Scarlett, Virginia T.; Lovell, John T.; Shao, Mingqin; Phillips, Jeremy; Shu, Shengqiang; Lusinska, Joanna; Goodstein, David M.; Jenkins, Jerry; Grimwood, Jane; Barry, Kerrie; Chalhoub, Boulos; Schmutz, Jeremy; Hasterok, Robert; Catalan, Pilar; Vogel, John P. Share Save
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.) McGrath, J. Mitchell; Funk, Andrew; Galewski, Paul; Ou, Shujun; Townsend, Belinda; Davenport, Karen; Daligault, Hajnalka; Johnson, Shannon; Lee, Joyce; Hastie, Alex; Darracq, Aude; Willems, Glenda; Barnes, Steve; Liachko, Ivan; Sullivan, Shawn; Koren, Sergey; Phillippy, Adam; Wang, Jie; Liu, Tiffany; Pulman, Jane; Childs, Kevin; Shu, Shengqiang; Yocum, Anastasia; Fermin, Damian; Mutasa-Gottgens, Effie; Stevanato, Piergiorgio; Taguchi, Kazunori; Naegele, Rachel; Dorn, Kevin M. Share Save
Dynamic genome evolution in a model fern Marchant, D. Blaine; Chen, Guang; Cai, Shengguan; Chen, Fei; Schafran, Peter; Jenkins, Jerry; Shu, Shengqiang; Plott, Chris; Webber, Jenell; Lovell, John T.; He, Guifen; Sandor, Laura; Williams, Melissa; Rajasekar, Shanmugam; Healey, Adam; Barry, Kerrie; Zhang, Yinwen; Sessa, Emily; Dhakal, Rijan R.; Wolf, Paul G.; Harkess, Alex; Li, Fay-Wei; Roessner, Clemens; Becker, Annette; Gramzow, Lydia; Xue, Dawei; Wu, Yuhuan; Tong, Tao; Wang, Yuanyuan; Dai, Fei; Hua, Shuijin; Wang, Hua; Xu, Shengchun; Xu, Fei; Duan, Honglang; Theissen, Guenter; McKain, Michael R.; Li, Zheng; McKibben, Michael T. W.; Barker, Michael S.; Schmitz, Robert J.; Stevenson, Dennis W.; Zumajo-Cardona, Cecilia; Ambrose, Barbara A.; Leebens-Mack, James H.; Grimwood, Jane; Schmutz, Jeremy; Soltis, Pamela S.; Soltis, Douglas E.; Chen, Zhong-Hua Share Save
Chromosome evolution and the genetic basis of agronomically important traits in greater yam Bredeson, Jessen, V; Lyons, Jessica B.; Oniyinde, Ibukun O.; Okereke, Nneka R.; Kolade, Olufisayo; Nnabue, Ikenna; Nwadili, Christian O.; Hribova, Eva; Parker, Matthew; Nwogha, Jeremiah; Shu, Shengqiang; Carlson, Joseph; Kariba, Robert; Muthemba, Samuel; Knop, Katarzyna; Barton, Geoffrey J.; Sherwood, Anna, V; Lopez-Montes, Antonio; Asiedu, Robert; Jamnadass, Ramni; Muchugi, Alice; Goodstein, David; Egesi, Chiedozie N.; Featherston, Jonathan; Asfaw, Asrat; Simpson, Gordon G.; Dolezel, Jaroslav; Hendre, Prasad S.; Van Deynze, Allen; Kumar, Pullikanti Lava; Obidiegwu, Jude E.; Bhattacharjee, Ranjana; Rokhsar, Daniel S. Share Save
Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA Bewg, W. Patrick; Harding, Scott A.; Engle, Nancy L.; Vaidya, Brajesh N.; Zhou, Ran; Reeves, Jacob; Horn, Thomas W.; Joshee, Nirmal; Jenkins, Jerry W.; Shu, Shengqiang; Barry, Kerrie W.; Yoshinaga, Yuko; Grimwood, Jane; Schmitz, Robert J.; Schmutz, Jeremy; Tschaplinski, Timothy J.; Tsai, Chung-Jui Share Save
Genomic variation within the maize stiff-stalk heterotic germplasm pool Bornowski, Nolan; Michel, Kathryn J.; Hamilton, John P.; Ou, Shujun; Seetharam, Arun S.; Jenkins, Jerry; Grimwood, Jane; Plott, Chris; Shu, Shengqiang; Talag, Jayson; Kennedy, Megan; Hundley, Hope; Singan, Vasanth R.; Barry, Kerrie; Daum, Chris; Yoshinaga, Yuko; Schmutz, Jeremy; Hirsch, Candice N.; Hufford, Matthew B.; Leon, Natalia; Kaeppler, Shawn M.; Buell, C. Robin Share Save
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