Avinash Sreedasyam - Publications, H-index & Citations

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Avinash Sreedasyam

hudsonalpha institute for biotechnology

31H-index

116Paper Count

5.4KCitation Count

Published Papers 38

Publication Date

A sorghum pangenome reference improves global crop trait discovery

Nature

IF48.5

2026-03-11

OAAI

Geoffrey P. Morris; Avril M. Harder; Adam L. Healey; Chloee M. McLaughlin; Joanna L. Rifkin; Clara Cruet-Burgos; Jerry W. Jenkins; Shengqiang Shu; John J. Spiekerman; Carl J. VanGessel; Erica Agnew; Alain Audebert; Kerrie Barry; Ivan Baxter; Gregory Beurier; Lori Beth Boston; Richard E. Boyles; Siobhan M. Brady; Victoria Bunting; Jacqueline M. Chaparro; Chaney Courtney; Joseph Sékou B. Dembele; Santosh Deshpande; Cyril Diatta; Nathaniel Eck; Andrea L. Eveland; Jacques M. Faye; Dave Flowers; Daniel Fonceka; Boubacar Gano; Marie de Gracia Coquerel; David Goodstein; Jane Grimwood; Matthew E. Hudson; Jana Kholova; Katherine Johnson; Kristen K. Johnson; Dorota Kawa; Mamoutou Kouressy; Stephen Kresovich; Scott Lee; Peggy G. Lemaux; Robert Lowery; Delphine Luquet; Fanna Maina; Sujan Mamidi; John K. McKay; Todd P. Michael; Taye T. Mindaye; John Mullet; Philip Ozersky; Christopher Plott; Jessica E. Prenni; Gael Pressoir; Jean-François Rami; Trevor W. Rife; Jocelyn Saxton; Bassirou Sine; Avinash Sreedasyam; Jayson Talag; Niaba Teme; Mitchell R. Tuinstra; Vincent Vadez; John P. Vogel; Rachel Walstead; Jianan Wang; Jenell Webber; Melissa Williams; Yuxing Xu; Todd C. Mockler; Jesse R. Lasky; Brian R. Rice; Jeremy Schmutz; Nadia Shakoor; John T. Lovell

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Genomic approaches to accelerate American chestnut restoration

Science

IF45.8

2026-02-12

PREAI

Jared W. Westbrook; Joanna Malukiewicz; Qian Zhang; Avinash Sreedasyam; Jerry W. Jenkins; Vasiliy Lakoba; Sara Fitzsimmons; Jamie Van Clief; Kendra Collins; Stephen Hoy; Cassie Stark; Lake Graboski; Eric Jenkins; Thomas M. Saielli; Benjamin T. Jarrett; Lucinda J. Wigfield; Lauren M. Kerwien; Ciera Wilbur; Alexander M. Sandercock; J. Hill Craddock; Susanna Keriö; Tetyana Zhebentyayeva; Shenghua Fan; Austin M. Thomas; Albert G. Abbott; C. Dana Nelson; Xiaoxia Xia; James R. McKenna; Caleb Kell; Melissa Williams; LoriBeth Boston; Christopher Plott; Florian Carle; Jack Swatt; Jack Ostroff; Steven N. Jeffers; Kathleen McKeever; Erica Smith; Thomas J. Ellis; Joseph B. James; Paul Sisco; Andrew Newhouse; Erik Carlson; William A. Powell; Frederick V. Hebard; John Scrivani; Caragh Heverly; Martin Cipollini; Brian Clark; Eric Evans; Bruce Levine; John E. Carlson; David Goodstein; Jack Orebaugh; Zamin K. Yang; Madhavi Z. Martin; Joanna Tannous; Tomás A. Rush; Nancy L. Engle; Timothy J. Tschaplinski; Jane Grimwood; Jeremy Schmutz; Jason A. Holliday; John T. Lovell

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Rhythmic Mechanisms Governing CAM Photosynthesis in Kalanchoe fedtschenkoi: High-Resolution Temporal Transcriptomics

International Journal of Molecular Sciences

IF4.9

2026-01-30

OAAI

Rongbin Hu; Sara Jawdy; Avinash Sreedasyam; Anna Lipzen; Mei Wang; Vivian Ng; Christopher Daum; Keykhosrow Keymanesh; Degao Liu; Alex Hu; Asher Pasha; Nicholas J. Provart; Anne M. Borland; Timothy J. Tschaplinski; Gerald A. Tuskan; Jeremy Schmutz; Xiaohan Yang

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Evolutionary and methodological considerations when interpreting gene presence–absence variation in pangenomes

NAR Genomics and Bioinformatics

IF2.8

2026-01-30

OAAI

Tomáš Brůna; Avinash Sreedasyam; Avril M Harder; John T Lovell

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Seed coat transcriptomic profiling of 5-593, a genotype important for genetic studies of seed coat color and patterning in common bean (Phaseolus vulgaris L.)

BMC PLANT BIOLOGY

IF4.8

2025-03-05

OAAI

Roy, Jayanta; Sreedasyam, Avinash; Osborne, Caroline; Lee, Rian; Mcclean, Phillip E.

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Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes

PLANTS-BASEL

IF4.1

2024-12-08

OAAI

Hu, Rongbin; Zhang, Jin; Jawdy, Sara; Sreedasyam, Avinash; Lipzen, Anna; Wang, Mei; Ng, Vivian; Daum, Christopher; Keymanesh, Keykhosrow; Liu, Degao; Hu, Alex; Chen, Jin-Gui; Tuskan, Gerald A.; Schmutz, Jeremy; Yang, Xiaohan

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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean

PLANT JOURNAL

IF5.7

2024-09-14

OAAI

Espina, Mary Jane C.; Lovell, John T.; Jenkins, Jerry; Shu, Shengqiang; Sreedasyam, Avinash; Jordan, Brandon D.; Webber, Jenell; Boston, LoriBeth; Bruna, Tomas; Talag, Jayson; Goodstein, David; Grimwood, Jane; Stacey, Gary; Cannon, Steven B.; Lorenz, Aaron J.; Schmutz, Jeremy; Stupar, Robert M.

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Genome resources for three modern cotton lines guide future breeding efforts

NATURE PLANTS

IF13.6

2024-05-30

OAAI

Sreedasyam, Avinash; Lovell, John T.; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W.; Plott, Christopher; Bryan, Kempton B.; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C.; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C.; Dever, Jane K.; Scheffler, Jodi A.; Pauli, Duke; Jenkins, Johnie N.; Mccarty, Jack C.; Williams, Melissa; Boston, Loribeth; Webber, Jenell; Udall, Joshua A.; Chen, Z. Jeffrey; Bourland, Fred; Stiller, Warwick N.; Saski, Christopher A.; Grimwood, Jane; Chee, Peng W.; Jones, Don C.; Schmutz, Jeremy

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Phylogenetic and functional analysis of tiller angle control homeologs in allotetraploid cotton

FRONTIERS IN PLANT SCIENCE

IF4.8

2024-01-31

OAAI

Kangben, Foster; Kumar, Sonika; Li, Zhigang; Sreedasyam, Avinash; Dardick, Chris; Jones, Don; Saski, Christopher A.

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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

NUCLEIC ACIDS RESEARCH

IF13.1

2023-08-01

OAAI

Sreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy

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Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet

NATURE COMMUNICATIONS

IF15.7

2023-06-21

OAAI

Devos, Katrien M.; Qi, Peng; Bahri, Bochra A.; Gimode, Davis M.; Jenike, Katharine; Manthi, Samuel J.; Lule, Dagnachew; Lux, Thomas; Martinez-Bello, Liliam; Pendergast, Thomas H.; Plott, Chris; Saha, Dipnarayan; Sidhu, Gurjot S.; Sreedasyam, Avinash; Wang, Xuewen; Wang, Hao; Wright, Hallie; Zhao, Jianxin; Deshpande, Santosh; de Villiers, Santie; Dida, Mathews M.; Grimwood, Jane; Jenkins, Jerry; Lovell, John; Mayer, Klaus F. X.; Mneney, Emmarold E.; Ojulong, Henry F.; Schatz, Michael C.; Schmutz, Jeremy; Song, Bo; Tesfaye, Kassahun; Odeny, Damaris A.

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Transcriptome and DNA methylome divergence of inflorescence development between 2 ecotypes in Panicum hallii

PLANT PHYSIOLOGY

IF6.9

2023-04-05

OAAI

Weng, Xiaoyu; Song, Haili; Sreedasyam, Avinash; Haque, Taslima; Zhang, Li; Chen, Cindy; Yoshinaga, Yuko; Williams, Melissa; O'Malley, Ronan C.; Grimwood, Jane; Schmutz, Jeremy; Juenger, Thomas E.

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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics

NATURE PLANTS

IF13.6

2023-02-06

OAAI

Healey, Adam L.; Piatkowski, Bryan; Lovell, John T.; Sreedasyam, Avinash; Carey, Sarah B.; Mamidi, Sujan; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Lawrence, Travis; Aguero, Blanka; Carrell, Alyssa A.; Nieto-Lugilde, Marta; Talag, Jayson; Duffy, Aaron; Jawdy, Sara; Carter, Kelsey R.; Boston, Lori-Beth; Jones, Teresa; Jaramillo-Chico, Juan; Harkess, Alex; Barry, Kerrie; Keymanesh, Keykhosrow; Bauer, Diane; Grimwood, Jane; Gunter, Lee; Schmutz, Jeremy; Weston, David J.; Shaw, A. Jonathan

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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants

JOURNAL OF PLANT PHYSIOLOGY

IF4.1

2022-10-01

OAAI

Hu, Rongbin; Zhang, Jin; Jawdy, Sara; Sreedasyam, Avinash; Lipzen, Anna; Wang, Mei; Ng, Vivian; Daum, Christopher; Keymanesh, Keykhosrow; Liu, Degao; Lu, Haiwei; Ranjan, Priya; Chen, Jin-Gui; Muchero, Wellington; Tschaplinski, Timothy J.; Tuskan, Gerald A.; Schmutz, Jeremy; Yang, Xiaohan

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GENESPACE tracks regions of interest and gene copy number variation across multiple genomes

ELIFE

IF0

2022-09-09

117

OAAI

Lovell, John T.; Sreedasyam, Avinash; Schranz, M. Eric; Wilson, Melissa; Carlson, Joseph W.; Harkess, Alex; Emms, David; Goodstein, David M.; Schmutz, Jeremy

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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding

NATURE COMMUNICATIONS

IF15.7

2021-07-05

OAAI

Lovell, John T.; Bentley, Nolan B.; Bhattarai, Gaurab; Jenkins, Jerry W.; Sreedasyam, Avinash; Alarcon, Yanina; Bock, Clive; Boston, Lori Beth; Carlson, Joseph; Cervantes, Kimberly; Clermont, Kristen; Duke, Sara; Krom, Nick; Kubenka, Keith; Mamidi, Sujan; Mattison, Christopher P.; Monteros, Maria J.; Pisani, Cristina; Plott, Christopher; Rajasekar, Shanmugam; Rhein, Hormat Shadgou; Rohla, Charles; Song, Mingzhou; Hilaire, Rolston St.; Shu, Shengqiang; Wells, Lenny; Webber, Jenell; Heerema, Richard J.; Klein, Patricia E.; Conner, Patrick; Wang, Xinwang; Grauke, L. J.; Grimwood, Jane; Schmutz, Jeremy; Randall, Jennifer J.

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Gene-rich UV sex chromosomes harbor conserved regulators of sexual development

SCIENCE ADVANCES

IF12.5

2021-07-02

OAAI

Carey, Sarah B.; Jenkins, Jerry; Lovell, John T.; Maumus, Florian; Sreedasyam, Avinash; Payton, Adam C.; Shu, Shengqiang; Tiley, George P.; Fernandez-Pozo, Noe; Healey, Adam; Barry, Kerrie; Chen, Cindy; Wang, Mei; Lipzen, Anna; Daum, Chris; Saski, Christopher A.; McBreen, Jordan C.; Conrad, Roth E.; Kollar, Leslie M.; Olsson, Sanna; Huttunen, Sanna; Landis, Jacob B.; Burleigh, J. Gordon; Wickett, Norman J.; Johnson, Matthew G.; Rensing, Stefan A.; Grimwood, Jane; Schmutz, Jeremy; McDaniel, Stuart F.

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The tepary bean genome provides insight into evolution and domestication under heat stress

NATURE COMMUNICATIONS

IF15.7

2021-05-11

OAAI

Moghaddam, Samira Mafi; Oladzad, Atena; Koh, Chushin; Ramsay, Larissa; Hart, John P.; Mamidi, Sujan; Hoopes, Genevieve; Sreedasyam, Avinash; Wiersma, Andrew; Zhao, Dongyan; Grimwood, Jane; Hamilton, John P.; Jenkins, Jerry; Vaillancourt, Brieanne; Wood, Joshua C.; Schmutz, Jeremy; Kagale, Sateesh; Porch, Timothy; Bett, Kirstin E.; Buell, C. Robin; McClean, Phillip E.

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Pests, diseases, and aridity have shaped the genome of Corymbia citriodora

COMMUNICATIONS BIOLOGY

IF5.1

2021-05-10

OAAI

Healey, Adam L.; Shepherd, Mervyn; King, Graham J.; Butler, Jakob B.; Freeman, Jules S.; Lee, David J.; Potts, Brad M.; Silva-Junior, Orzenil B.; Baten, Abdul; Jenkins, Jerry; Shu, Shengqiang; Lovell, John T.; Sreedasyam, Avinash; Grimwood, Jane; Furtado, Agnelo; Grattapaglia, Dario; Barry, Kerrie W.; Hundley, Hope; Simmons, Blake A.; Schmutz, Jeremy; Vaillancourt, Rene E.; Henry, Robert J.

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A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

GENOME BIOLOGY

IF9.4

2020-10-06

OAAI

Hofmeister, Brigitte T.; Denkena, Johanna; Colome-Tatche, Maria; Shahryary, Yadollah; Hazarika, Rashmi; Grimwood, Jane; Mamidi, Sujan; Jenkins, Jerry; Grabowski, Paul P.; Sreedasyam, Avinash; Shu, Shengqiang; Barry, Kerrie; Lail, Kathleen; Adam, Catherine; Lipzen, Anna; Sorek, Rotem; Kudrna, Dave; Talag, Jayson; Wing, Rod; Hall, David W.; Jacobsen, Daniel; Tuskan, Gerald A.; Schmutz, Jeremy; Johannes, Frank; Schmitz, Robert J.

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Research Directions