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Cross-Institutional Validation of a Multimodal Deep Learning Model for Glioblastoma Survival Prediction Hartsock, Iryna; Khanna, Rakesh; Chunhua, Qingrong; Chunhua, Yan; Waqas, Asim; Ullah, Ehsan; Vogelbaum, Michael; Farinhas, Joaquim; Rasool, Ghulam; Meerzaman, Daoud Share Save
Oncopacket: integration of cancer research data using GA4GH phenopackets Sierk, Michael; Danis, Daniel; Patil, Sujay; Kishor, Nobal; Mondal, Rajdeep; Jha, Abhishek; Chen, Qingrong; Yan, Chunhua; Munoz-Torres, Monica; Meerzaman, Daoud; Robinson, Peter N.; Reese, Justin T. Share Save
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TRAIL induces cytokine production via the NFkB2 pathway promoting neutrophil chemotaxis and neutrophil-mediated immune-suppression in triple negative breast cancer cells Kundu, Manjari; Greer, Yoshimi E.; Lobanov, Alexei; Ridnour, Lisa; Donahue, Renee N.; Ng, Yeap; Ratnayake, Shashi; White, Karley; Voeller, Donna; Weltz, Sarah; Chen, Qingrong; Lockett, Stephen J.; Cam, Maggie; Meerzaman, Daoud; Wink, David A.; Weigert, Roberto; Lipkowitz, Stanley Share Save
The ESCRT protein CHMP5 promotes T cell leukemia by enabling BRD4-p300-dependent transcription Umphred-Wilson, Katharine; Ratnayake, Shashikala; Tang, Qianzi; Wang, Rui; Chaudhary, Sneha Ghosh; Ballachanda, Devaiah N.; Trichka, Josephine; Wisniewski, Jan; Zhou, Lan; Chen, Qingrong; Meerzaman, Daoud; Singer, Dinah S.; Adoro, Stanley Share Save
Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome Palczewski, Marianne B.; Kuschman, Hannah Petraitis; Hoffman, Brian M.; Kathiresan, Venkatesan; Yang, Hao; Glynn, Sharon A.; Wilson, David L.; Kool, Eric T.; Montfort, William R.; Chang, Jenny; Petenkaya, Aydolun; Chronis, Constantinos; Cundari, Thomas R.; Sappa, Sushma; Islam, Kabirul; Mcvicar, Daniel W.; Fan, Yu; Chen, Qingrong; Meerzaman, Daoud; Sierk, Michael; Thomas, Douglas D. Share Save
Single Cell Transcriptome Analysis of CD34+Cells from Patients with RUNX1-Fpdmm at Different Stages of Disease Progression Bresciani, Erica; Capaldo, Bian J.; Kajdic, Amra; Deuitch, Natalie T.; Craft, Kathleen; Chong, Shawn; Elkahloun, Abdel G.; Park, Morgan; Young, Alice; Young, David J.; Meerzaman, Daoud; Chen, Qingrong; Liu, Paul P. Share Save
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Cellular fate of a plant virus immunotherapy candidate Omole, Anthony O.; Affonso de Oliveira, Jessica Fernanda; Sutorus, Lucas; Karan, Sweta; Zhao, Zhongchao; Neun, Barry W.; Cedrone, Edward; Clogston, Jeffrey D.; Xu, Jie; Sierk, Michael; Chen, Qingrong; Meerzaman, Daoud; Dobrovolskaia, Marina A.; Steinmetz, Nicole F. Share Save
Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome Masood, Daniall; Ren, Luyao; Nguyen, Cu; Brundu, Francesco G.; Zheng, Lily; Zhao, Yongmei; Jaeger, Erich; Li, Yong; Cha, Seong Won; Halpern, Aaron; Truong, Sean; Virata, Michael; Yan, Chunhua; Chen, Qingrong; Pang, Andy; Alberto, Reyes; Xiao, Chunlin; Yang, Zhaowei; Chen, Wanqiu; Wang, Charles; Cross Jr, Frank; Catreux, Severine; Shi, Leming; Beaver, Julia A.; Xiao, Wenming; Meerzaman, Daoud M. Share Save
Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities (vol 8, 68, 2024) Bateman, Nicholas W.; Abulez, Tamara; Soltis, Anthony R.; McPherson, Andrew; Choi, Seongmin; Garsed, Dale W.; Pandey, Ahwan; Tian, Chunqiao; Hood, Brian L.; Conrads, Kelly A.; Teng, Pang-ning; Oliver, Julie; Gist, Glenn; Mitchell, Dave; Litzi, Tracy J.; Tarney, Christopher M.; Crothers, Barbara A.; Mhawech-Fauceglia, Paulette; Dalgard, Clifton L.; Wilkerson, Matthew D.; Pierobon, Mariaelena; Petricoin, Emanuel F.; Yan, Chunhua; Meerzaman, Daoud; Bodelon, Clara; Wentzensen, Nicolas; Lee, Jerry S. H.; Huntsman, David G.; Shah, Sohrab; Shriver, Craig D.; Phippen, Neil T.; Darcy, Kathleen M.; Bowtell, David D. L.; Conrads, Thomas P.; Maxwell, G. Larry Share Save
NCI Cancer Research Data Commons: Lessons Learned and Future State Kim, Erika; Davidsen, Tanja; Davis-Dusenbery, Brandi N.; Baumann, Alexander; Maggio, Angela; Chen, Zhaoyi; Meerzaman, Daoud; Casas-Silva, Esmeralda; Pot, David; Pihl, Todd; Otridge, John; Shalley, Eve; Barnholtz-Sloan, Jill S.; Kerlavage, Anthony R. Share Save
Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities Bateman, Nicholas W.; Abulez, Tamara; Soltis, Anthony R.; Mcpherson, Andrew; Choi, Seongmin; Garsed, Dale W.; Pandey, Ahwan; Tian, Chunqiao; Hood, Brian L.; Conrads, Kelly A.; Teng, Pang-ning; Oliver, Julie; Gist, Glenn; Mitchell, Dave; Litzi, Tracy J.; Tarney, Christopher M.; Crothers, Barbara A.; Mhawech-Fauceglia, Paulette; Dalgard, Clifton L.; Wilkerson, Matthew D.; Pierobon, Mariaelena; Petricoin, Emanuel F.; Yan, Chunhua; Meerzaman, Daoud; Bodelon, Clara; Wentzensen, Nicolas; Lee, Jerry S. H.; Huntsman, David G.; Shah, Sohrab; Shriver, Craig D.; Phippen, Neil T.; Darcy, Kathleen M.; Bowtell, David D. L.; Conrads, Thomas P.; Maxwell, G. Larry Share Save
Glioblastoma survival is associated with distinct proteomic alteration signatures post chemoirradiation in a large-scale proteomic panel (vol 13, 1127645, 2023) Krauze, Andra Valentina; Sierk, Michael; Nguyen, Trinh; Chen, Qingrong; Yan, Chunhua; Hu, Ying; Jiang, William; Tasci, Erdal; Zgela, Theresa Cooley; Sproull, Mary; Mackey, Megan; Shankavaram, Uma; Meerzaman, Daoud; Camphausen, Kevin Share Save
Proteogenomic analysis of enriched tumor epithelium identifies prognostic signatures and an increased dependency of homologous recombination proficient cells on bmi1 in high grade serous ovarian cancer Maxwell, George Larry; Bateman, Nicholas; Abulez, Tamara; Soltis, Anthony; McPherson, Andrew; Choi, Seongmin; Garsed, Dale; Tian, Chunqiao; Hood, Brian; Conrads, Kelly; Teng, Pang-ning; Oliver, Julie; Gist, Glenn; Mitchell, Dave; Litzi, Tracy; Tarney, Christopher; Dalgard, Clifton; Wilkerson, Matthew; Pierobon, Mariaelena; Petricoin, Emmanuel; Yan, Chunhua; Meerzaman, Daoud; Bodelon, Clara; Wentzensen, Nicolas; Lee, Jerry S. H.; Huntsman, David; Shah, Sohrab; Shriver, Craig; Phippen, Neil; Darcy, Kathleen; Bowtell, David; Conrads, Thomas Share Save
Abundant binary promoter switches in lineage-determining transcription factors indicate a digital component of cell fate determination Li, Hongchuan; Rahman, Md Ahasanur; Ruesch, Michael; Eisele, Caprice D.; Anderson, Erik M.; Wright, Paul W.; Cao, Jennie; Ratnayake, Shashikala; Chen, Qingrong; Yan, Chunhua; Meerzaman, Daoud; Abraham, Roshini S.; Freud, Aharon G.; Anderson, Stephen K. Share Save
Glioblastoma survival is associated with distinct proteomic alteration signatures post chemoirradiation in a large-scale proteomic panel Krauze, Andra Valentina; Sierk, Michael; Nguyen, Trinh; Chen, Qingrong; Yan, Chunhua; Hu, Ying; Jiang, William; Tasci, Erdal; Zgela, Theresa Cooley; Sproull, Mary; Mackey, Megan; Shankavaram, Uma; Meerzaman, Daoud; Camphausen, Kevin Share Save
The General Transcription Factor TAF7 Is Essential for Embryonic Development but Not Essential for the Survival or Differentiation of Mature T Cells Gegonne, Anne; Tai, Xuguang; Zhang, Jinghui; Wu, Gang; Zhu, Jianjian; Yoshimoto, Aki; Hanson, Jeffrey; Cultraro, Constance; Chen, Qing-Rong; Guinter, Terry; Yang, Zhihui; Hathcock, Karen; Singer, Alfred; Rodriguez-Canales, Jaime; Tessarollo, Lino; Mackem, Susan; Meerzaman, Daoud; Buetow, Ken; Singer, Dinah S. Share Save
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