Not logged in OmniPath: integrated knowledgebase for multi-omics analysis Turei, Denes; Schaul, Jonathan; Palacio-Escat, Nicolas; Bohar, Balazs; Bai, Yunfan; Ceccarelli, Francesco; Cevrim, Elif; Daley, Macabe; Darcan, Melih; Dimitrov, Daniel; Dogan, Tunca; Domingo-Fernandez, Daniel; Dugourd, Aurelien; Gabor, Attila; Gul, Lejla; Hall, Benjamin A.; Hoyt, Charles Tapley; Ivanova, Olga; Klein, Michal; Lawrence, Toby; Mananes, Diego; Modos, Dezso; Muller-Dott, Sophia; Olbei, Marton; Schmidt, Christina; Sen, Bunyamin; Theis, Fabian J.; Unlu, Atabey; Ulusoy, Erva; Valdeolivas, Alberto; Korcsmaros, Tamas; Saez-Rodriguez, Julio Share Save
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Computational tools and data integration to accelerate vaccine development: challenges, opportunities, and future directions Anderson, Lindsey N.; Hoyt, Charles Tapley; Zucker, Jeremy D.; Mcnaughton, Andrew D.; Teuton, Jeremy R.; Karis, Klas; Arokium-Christian, Natasha N.; Warley, Jackson T.; Stromberg, Zachary R.; Gyori, Benjamin M.; Kumar, Neeraj Share Save
The Human Phenotype Ontology in 2024: phenotypes around the world Gargano, Michael A.; Matentzoglu, Nicolas; Coleman, Ben; Addo-Lartey, Eunice B.; Anagnostopoulos, Anna, V; Anderton, Joel; Avillach, Paul; Bagley, Anita M.; Bakstein, Eduard; Balhoff, James P.; Baynam, Gareth; Bello, Susan M.; Berk, Michael; Bertram, Holli; Bishop, Somer; Blau, Hannah; Bodenstein, David F.; Botas, Pablo; Boztug, Kaan; Cady, Jolana; Callahan, Tiffany J.; Cameron, Rhiannon; Carbon, Seth J.; Castellanos, Francisco; Caufield, J. Harry; Chan, Lauren E.; Chute, Christopher G.; Cruz-Rojo, Jaime; Dahan-Oliel, Noemi; Davids, Jon R.; de Dieuleveult, Maud; de Souza, Vinicius; de Vries, Bert B. A.; de Vries, Esther; DePaulo, J. Raymond; Derfalvi, Beata; Dhombres, Ferdinand; Diaz-Byrd, Claudia; Dingemans, Alexander J. M.; Donadille, Bruno; Duyzend, Michael; Elfeky, Reem; Essaid, Shahim; Fabrizzi, Carolina; Fico, Giovanna; Firth, Helen, V; Freudenberg-Hua, Yun; Fullerton, Janice M.; Gabriel, Davera L.; Gilmour, Kimberly; Giordano, Jessica; Goes, Fernando S.; Moses, Rachel Gore; Green, Ian; Griese, Matthias; Groza, Tudor; Gu, Weihong; Guthrie, Julia; Gyori, Benjamin; Hamosh, Ada; Hanauer, Marc; Hanusova, Katerina; He, Yongqun (Oliver); Hegde, Harshad; Helbig, Ingo; Holasova, Katerina; Hoyt, Charles Tapley; Huang, Shangzhi; Hurwitz, Eric; Jacobsen, Julius O. B.; Jiang, Xiaofeng; Joseph, Lisa; Keramatian, Kamyar; King, Bryan; Knoflach, Katrin; Koolen, David A.; Kraus, Megan L.; Kroll, Carlo; Kusters, Maaike; Ladewig, Markus S.; Lagorce, David; Lai, Meng-Chuan; Lapunzina, Pablo; Laraway, Bryan; Lewis-Smith, David; Li, Xiarong; Lucano, Caterina; Majd, Marzieh; Marazita, Mary L.; Martinez-Glez, Victor; McHenry, Toby H.; McInnis, Melvin G.; McMurry, Julie A.; Mihulova, Michaela; Millett, Caitlin E.; Mitchell, Philip B.; Moslerova, Veronika; Narutomi, Kenji; Nematollahi, Shahrzad; Nevado, Julian; Nierenberg, Andrew A.; Cajbikova, Nikola Novak; Nurnberger, John I., Jr.; Ogishima, Soichi; Olson, Daniel; Ortiz, Abigail; Pachajoa, Harry; Perez de Nanclares, Guiomar; Peters, Amy; Putman, Tim; Rapp, Christina K.; Rath, Ana; Reese, Justin; Rekerle, Lauren; Roberts, Angharad M.; Roy, Suzy; Sanders, Stephan J.; Schuetz, Catharina; Schulte, Eva C.; Schulze, Thomas G.; Schwarz, Martin; Scott, Katie; Seelow, Dominik; Seitz, Berthold; Shen, Yiping; Similuk, Morgan N.; Simon, Eric S.; Singh, Balwinder; Smedley, Damian; Smith, Cynthia L.; Smolinsky, Jake T.; Sperry, Sarah; Stafford, Elizabeth; Stefancsik, Ray; Steinhaus, Robin; Strawbridge, Rebecca; Sundaramurthi, Jagadish Chandrabose; Talapova, Polina; Tenorio Castano, Jair A.; Tesner, Pavel; Thomas, Rhys H.; Thurm, Audrey; Turnovec, Marek; van Gijn, Marielle E.; Vasilevsky, Nicole A.; Vlckova, Marketa; Walden, Anita; Wang, Kai; Wapner, Ron; Ware, James S.; Wiafe, Addo A.; Wiafe, Samuel A.; Wiggins, Lisa D.; Williams, Andrew E.; Wu, Chen; Wyrwoll, Margot J.; Xiong, Hui; Yalin, Nefize; Yamamoto, Yasunori; Yatham, Lakshmi N.; Yocum, Anastasia K.; Young, Allan H.; Yueksel, Zafer; Zandi, Peter P.; Zankl, Andreas; Zarante, Ignacio; Zvolsky, Miroslav; Toro, Sabrina; Carmody, Leigh C.; Harris, Nomi L.; Munoz-Torres, Monica C.; Danis, Daniel; Mungall, Christopher J.; Koehler, Sebastian; Haendel, Melissa A.; Robinson, Peter N. Share Save
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Democratizing knowledge representation with BioCypher Lobentanzer, Sebastian; Aloy, Patrick; Baumbach, Jan; Bohar, Balazs; Carey, Vincent J.; Charoentong, Pornpimol; Danhauser, Katharina; Dogan, Tunca; Dreo, Johann; Dunham, Ian; Farr, Elias; Fernandez-Torras, Adria; Gyori, Benjamin M.; Hartung, Michael; Hoyt, Charles Tapley; Klein, Christoph; Korcsmaros, Tamas; Maier, Andreas; Mann, Matthias; Ochoa, David; Pareja-Lorente, Elena; Popp, Ferdinand; Preusse, Martin; Probul, Niklas; Schwikowski, Benno; Sen, Buenyamin; Strauss, Maximilian T.; Turei, Denes; Ulusoy, Erva; Waltemath, Dagmar; Wodke, Judith A. H.; Saez-Rodriguez, Julio Share Save
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies Matentzoglu, Nicolas; Goutte-Gattat, Damien; Tan, Shawn Zheng Kai; Balhoff, James P.; Carbon, Seth; Caron, Anita R.; Duncan, William D.; Flack, Joe E.; Haendel, Melissa; Harris, Nomi L.; Hogan, William R.; Hoyt, Charles Tapley; Jackson, Rebecca C.; Kim, HyeongSik; Kir, Huseyin; Larralde, Martin; McMurry, Julie A.; Overton, James A.; Peters, Bjoern; Pilgrim, Clare; Stefancsik, Ray; Robb, Sofia M. C.; Toro, Sabrina; Vasilevsky, Nicole A.; Walls, Ramona; Mungall, Christopher J.; Osumi-Sutherland, David Share Save
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A Simple Standard for Sharing Ontological Mappings (SSSOM) Matentzoglu, Nicolas; Balhoff, James P.; Bello, Susan M.; Bizon, Chris; Brush, Matthew; Callahan, Tiffany J.; Chute, Christopher G.; Duncan, William D.; Evelo, Chris T.; Gabriel, Davera; Graybeal, John; Gray, Alasdair; Gyori, Benjamin M.; Haendel, Melissa; Harmse, Henriette; Harris, Nomi L.; Harrow, Ian; Hegde, Harshad B.; Hoyt, Amelia L.; Hoyt, Charles T.; Jiao, Dazhi; Jimenez-Ruiz, Ernesto; Jupp, Simon; Kim, Hyeongsik; Koehler, Sebastian; Liener, Thomas; Long, Qinqin; Malone, James; McLaughlin, James A.; McMurry, Julie A.; Moxon, Sierra; Munoz-Torres, Monica C.; Osumi-Sutherland, David; Overton, James A.; Peters, Bjoern; Putman, Tim; Queralt-Rosinach, Nuria; Shefchek, Kent; Solbrig, Harold; Thessen, Anne; Tudorache, Tania; Vasilevsky, Nicole; Wagner, Alex H.; Mungall, Christopher J. Share Save
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Leveraging Structured Biological Knowledge for Counterfactual Inference: A Case Study of Viral Pathogenesis Zucker, Jeremy; Paneri, Kaushal; Mohammad-Taheri, Sara; Bhargava, Somya; Kolambkar, Pallavi; Bakker, Craig; Teuton, Jeremy; Hoyt, Charles Tapley; Oxford, Kristie; Ness, Robert; Vitek, Olga Share Save
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Re-curation and rational enrichment of knowledge graphs in Biological Expression Language Hoyt, Charles Tapley; Domingo-Fernandez, Daniel; Aldisi, Rana; Xu, Lingling; Kolpeja, Kristian; Spalek, Sandra; Wollert, Esther; Bachman, John; Gyori, Benjamin M.; Greene, Patrick; Hofmann-Apitius, Martin Share Save
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