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Zhao, Jinxin; Han, Jiru; Lin, Yu-Wei; Zhu, Yan; Aichem, Michael; Garkov, Dimitar; Bergen, Phillip J.; Nang, Sue C.; Ye, Jian-Zhong; Zhou, Tieli; Velkov, Tony; Song, Jiangning; Schreiber, Falk; Li, Jian Share Save Share Save Share Save Dynamic Metabolic and Transcriptional Responses of Proteasome-Inhibited NeuronsSuciu, Ilinca; Delp, Johannes; Gutbier, Simon; Ueckert, Anna-Katharina; Spreng, Anna-Sophie; Eberhard, Philipp; Karreman, Christiaan; Schreiber, Falk; Madjar, Katrin; Rahnenfuehrer, Joerg; Celardo, Ivana; Amelio, Ivano; Leist, Marcel Share Save An Intelligent Strategy with All-Atom Molecular Dynamics Simulations for the Design of Lipopeptides against Multidrug- Resistant Pseudomonas aeruginosaJiang, Xukai; Han, Meiling; Tran, Kevin; Patil, Nitin A.; Ma, Wendong; Roberts, Kade D.; Xiao, Min; Sommer, Bjorn; Schreiber, Falk; Wang, Lushan; Velkov, Tony; Li, Jian Share Save Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biologyNiarakis, Anna; Waltemath, Dagmar; Glazier, James; Schreiber, Falk; Keating, Sarah M.; Nickerson, David; Chaouiya, Claudine; Siegel, Anne; Noel, Vincent; Hermjakob, Henning; Helikar, Tomas; Soliman, Sylvain; Calzone, Laurence Share Save COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021)Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save Share Save Share Save COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanismsOstaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save Health monitoring in birds using bio-loggers and whole blood transcriptomicsJax, Elinor; Muller, Inge; Borno, Stefan; Borlinghaus, Hanna; Eriksson, Gustaw; Fricke, Evi; Timmermann, Bernd; Pendl, Helene; Fiedler, Wolfgang; Klein, Karsten; Schreiber, Falk; Wikelski, Martin; Magor, Katharine E.; Kraus, Robert H. S. Share Save A novel chemical biology and computational approach to expedite the discovery of new-generation polymyxins against life-threatening Acinetobacter baumanniiJiang, Xukai; Patil, Nitin A.; Azad, Mohammad A. K.; Wickremasinghe, Hasini; Yu, Heidi; Zhao, Jinxin; Zhang, Xinru; Li, Mengyao; Gong, Bin; Wan, Lin; Ma, Wendong; Thompson, Philip E.; Yang, Kai; Yuan, Bing; Schreiber, Falk; Wang, Lushan; Velkov, Tony; Roberts, Kade D.; Li, Jian Share Save Genome-Scale Metabolic Modeling Reveals Metabolic Alterations of Multidrug-Resistant Acinetobacter baumannii in a Murine Bloodstream Infection ModelZhao, Jinxin; Zhu, Yan; Han, Jiru; Lin, Yu-Wei; Aichem, Michael; Wang, Jiping; Chen, Ke; Velkov, Tony; Schreiber, Falk; Li, Jian Share Save Simulations of octapeptin-outer membrane interactions reveal conformational flexibility is linked to antimicrobial potencyJiang, Xukai; Yang, Kai; Yuan, Bing; Gong, Bin; Wan, Lin; Patil, Nitin A.; Swarbrick, James D.; Roberts, Kade D.; Schreiber, Falk; Wang, Lushan; Velkov, Tony; Li, Jian Share Save Polymyxins Bind to the Cell Surface of Unculturable Acinetobacter baumannii and Cause Unique Dependent ResistanceZhu, Yan; Lu, Jing; Han, Mei-Ling; Jiang, Xukai; Azad, Mohammad A. K.; Patil, Nitin A.; Lin, Yu-Wei; Zhao, Jinxin; Hu, Yang; Yu, Heidi H.; Chen, Ke; Boyce, John D.; Dunstan, Rhys A.; Lithgow, Trevor; Barlow, Christopher K.; Li, Weifeng; Schneider-Futschik, Elena K.; Wang, Jiping; Gong, Bin; Sommer, Bjorn; Creek, Darren J.; Fu, Jing; Wang, Lushan; Schreiber, Falk; Velkov, Tony; Li, Jian Share Save Stage-specific metabolic features of differentiating neurons: Implications for toxicant sensitivity (vol 354, pg 64, 2018)Delp, Johannes; Gutbier, Simon; Cerff, Martin; Zasada, Christin; Niedenfuehr, Sebastian; Zhao, Liang; Smirnova, Lena; Hartung, Thomas; Borlinghaus, Hanna; Schreiber, Falk; Bergemann, Joerg; Gaetgens, Jochem; Beyss, Martin; Azzouzi, Salah; Waldmann, Tanja; Kempa, Stefan; Noeh, Katharina; Leist, Marcel Share Save Fly with the flock: immersive solutions for animal movement visualization and analyticsKlein, Karsten; Sommer, Bjoern; Nim, Hieu T.; Flack, Andrea; Safi, Kamran; Nagy, Mate; Feyer, Stefan P.; Zhang, Ying; Rehberg, Kim; Gluschkow, Alexej; Quetting, Michael; Fiedler, Wolfgang; Wikelski, Martin; Schreiber, Falk Share Save Share Save 
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