Not logged in Multiomic assessments of LNCaP and derived cell strains reveal determinants of prostate cancer pathobiology Bose, Arnab; Bankhead III, Armand; Coleman, Ilsa; Persse, Thomas; Han, Wanting; Galipeau, Patricia; Hanratty, Brian; Chu, Tony; Lucas, Jared; Li, Dapei; Bilkis, Rabeya; Itagi, Pushpa; Hassan, Sajida; Beightol, Mallory; Ko, Minjeong; Dumpit, Ruth; Haffner, Michael; Pritchard, Colin; Ha, Gavin; Nelson, Peter S. Share Save
The genomic landscape of lung cancer in never-smokers from the Women's Health Initiative Moorthi, Sitapriya; Paguirigan, Amy; Itagi, Pushpa; Ko, Minjeong; Pettinger, Mary; Hoge, Anna C. H.; Nag, Anwesha; Patel, Neil A.; Wu, Feinan; Sather, Cassie; Levine, Kevin M.; Fitzgibbon, Matthew P.; Thorner, Aaron R.; Anderson, Garnet L.; Ha, Gavin; Berger, Alice H. Share Save
Molecular phenotyping of small cell lung cancer using targeted cfDNA profiling of transcriptional regulatory regions Hiatt, Joseph B.; Doebley, Anna-Lisa; Arnold, Henry U.; Adil, Mohamed; Sandborg, Holly; Persse, Thomas W.; Ko, Minjeong; Wu, Feinan; Quintanal Villalonga, Alvaro; Santana-Davila, Rafael; Eaton, Keith; Dive, Caroline; Rudin, Charles M.; Thomas, Anish; Houghton, A. McGarry; Ha, Gavin; MacPherson, David Share Save
A framework for clinical cancer subtyping from nucleosome profiling of cell-free DNA Doebley, Anna-Lisa; Ko, Minjeong; Liao, Hanna; Cruikshank, A. Eden; Santos, Katheryn; Kikawa, Caroline; Hiatt, Joseph B.; Patton, Robert D.; De Sarkar, Navonil; Collier, Katharine A.; Hoge, Anna C. H.; Chen, Katharine; Zimmer, Anat; Weber, Zachary T.; Adil, Mohamed; Reichel, Jonathan B.; Polak, Paz; Adalsteinsson, Viktor A.; Nelson, Peter S.; MacPherson, David; Parsons, Heather A.; Stover, Daniel G.; Ha, Gavin Share Save
Nucleosome Patterns in Circulating Tumor DNA Reveal Transcriptional Regulation of Advanced Prostate Cancer Phenotypes De Sarkar, Navonil; Patton, Robert D.; Doebley, Anna-Lisa; Hanratty, Brian; Adil, Mohamed; Kreitzman, Adam J.; Sarthy, Jay F.; Ko, Minjeong; Brahma, Sandipan; Meers, Michael P.; Janssens, Derek H.; Ang, Lisa S.; Coleman, Ilsa M.; Bose, Arnab; Dumpit, Ruth F.; Lucas, Jared M.; Nunez, Talina A.; Nguyen, Holly M.; McClure, Heather M.; Pritchard, Colin C.; Schweizer, Michael T.; Morrissey, Colm; Choudhury, Atish D.; Baca, Sylvan C.; Berchuck, Jacob E.; Freedman, Matthew L.; Ahmad, Kami; Haffner, Michael C.; Montgomery, R. Bruce; Corey, Eva; Henikoff, Steven; Nelson, Peter S.; Ha, Gavin Share Save
Patterns of structural variation define prostate cancer across disease states Zhou, Meng; Ko, Minjeong; Hoge, Anna C. H.; Luu, Kelsey; Liu, Yuzhen; Russell, Magdalena L.; Hannon, William W.; Zhang, Zhenwei; Carrot-Zhang, Jian; Beroukhim, Rameen; Van Allen, Eliezer M.; Choudhury, Atish D.; Nelson, Peter S.; Freedman, Matthew L.; Taplin, Mary -Ellen; Meyerson, Matthew; Viswanathan, Srinivas R.; Ha, Gavin Share Save
DNA-based copy number analysis confirms genomic evolution of PDX models (vol 6, 30, 2022) Hoge, Anna C. H.; Getz, Michal; Zimmer, Anat; Ko, Minjeong; Raz, Linoy; Beroukhim, Rameen; Golub, Todd R.; Ha, Gavin; Ben-David, Uri Share Save
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A community effort to create standards for evaluating tumor subclonal reconstruction Salcedo, Adriana; Tarabichi, Maxime; Espiritu, Shadrielle Melijah G.; Deshwar, Amit G.; David, Matei; Wilson, Nathan M.; Dentro, Stefan; Wintersinger, Jeff A.; Liu, Lydia Y.; Ko, Minjeong; Sivanandan, Srinivasan; Zhang, Hongjiu; Zhu, Kaiyi; Ou Yang, Tai-Hsien; Chilton, John M.; Buchanan, Alex; Lalansingh, Christopher M.; P'ng, Christine; Anghel, Catalina V.; Umar, Imaad; Lo, Bryan; Zou, William; Simpson, Jared T.; Stuart, Joshua M.; Anastassiou, Dimitris; Guan, Yuanfang; Ewing, Adam D.; Ellrott, Kyle; Wedge, David C.; Morris, Quaid; Van Loo, Peter; Boutros, Paul C.; Jha, Alokkumar; Huang, Tanxiao; Yang, Tsun-Po; Peifer, Martin; Sahinalp, Cenk; Malikic, Salem; Vazquez-Garcia, Ignacio; Mustonen, Ville; Yang, Hsih-Te; Lee, Ken-Ray; Ji, Yuan; Sengupta, Subhajit; Rudewicz, Justine; Nikolski, Macha; Schaeverbeke, Quentin; Yuan, Ke; Markowetz, Florian; Macintyre, Geoff; Cmero, Marek; Chaudhary, Belal; Leshchiner, Ignaty; Livitz, Dimitri; Getz, Gad; Loher, Phillipe; Yu, Kaixian; Wang, Wenyi; Zhu, Hongtu Share Save
Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network Celaj, Albi; Gebbia, Marinella; Musa, Louai; Cote, Atina G.; Snider, Jamie; Wong, Victoria; Ko, Minjeong; Fong, Tiffany; Bansal, Paul; Mellor, Joseph C.; Seesankar, Gireesh; Nguyen, Maria; Zhou, Shijie; Wang, Liangxi; Kishore, Nishka; Stagljar, Igor; Suzuki, Yo; Yachie, Nozomu; Roth, Frederick P. Share Save
Pooled-matrix protein interaction screens using Barcode Fusion Genetics Yachie, Nozomu; Petsalaki, Evangelia; Mellor, Joseph C.; Weile, Jochen; Jacob, Yves; Verby, Marta; Ozturk, Sedide B.; Li, Siyang; Cote, Atina G.; Mosca, Roberto; Knapp, Jennifer J.; Ko, Minjeong; Yu, Analyn; Gebbia, Marinella; Sahni, Nidhi; Yi, Song; Tyagi, Tanya; Sheykhkarimli, Dayag; Roth, Jonathan F.; Wong, Cassandra; Musa, Louai; Snider, Jamie; Liu, Yi-Chun; Yu, Haiyuan; Braun, Pascal; Stagljar, Igor; Hao, Tong; Calderwood, Michael A.; Pelletier, Laurence; Aloy, Patrick; Hill, David E.; Vidal, Marc; Roth, Frederick P. Share Save
miRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting Cho, Sooyoung; Jang, Insu; Jun, Yukyung; Yoon, Suhyeon; Ko, Minjeong; Kwon, Yeajee; Choi, Ikjung; Chang, Hyeshik; Ryu, Daeun; Lee, Byungwook; Kim, V. Narry; Kim, Wankyu; Lee, Sanghyuk Share Save
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