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A cloud-based resource for genome coordinate-based exploration and large-scale analysis of chromosome aberrations and gene fusions in cancer Wang, Janet; Zheng, Jeanne; Lee, Elaine E.; Aguilar, Boris; Phan, John; Abdilleh, Kawther; Taylor, Ronald C.; Longabaugh, William; Johansson, Bertil; Mertens, Fredrik; Mitelman, Felix; Pot, David; LaFramboise, Thomas Share Save
Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach Lindemann, Stephen R.; Mobberley, Jennifer M.; Cole, Jessica K.; Markillie, L. M.; Taylor, Ronald C.; Huang, Eric; Chrisler, William B.; Wiley, H. S.; Lipton, Mary S.; Nelson, William C.; Fredrickson, James K.; Romine, Margaret F. Share Save
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Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation Faria, Jose P.; Davis, James J.; Edirisinghe, Janaka N.; Taylor, Ronald C.; Weisenhorn, Pamela; Olson, Robert D.; Stevens, Rick L.; Rocha, Miguel; Rocha, Isabel; Best, Aaron A.; DeJongh, Matthew; Tintle, Nathan L.; Parrello, Bruce; Overbeek, Ross; Henry, Christopher S. Share Save
Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq Mitchell, Hugh D.; Markillie, Lye Meng; Chrisler, William B.; Gaffrey, Matthew J.; Hu, Dehong; Szymanski, Craig J.; Xie, Yumei; Melby, Eric S.; Dohnalkova, Alice; Taylors, Ronald C.; Grate, Eva K.; Cooley, Scott K.; McDermott, Jason E.; Heredia-Langner, Alejandro; Orr, Galya Share Save
Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp PCC 7002 McClure, Ryan S.; Overall, Christopher C.; McDermott, Jason E.; Hill, Eric A.; Markillie, Lye Meng; McCue, Lee Ann; Taylor, Ronald C.; Ludwig, Marcus; Bryant, Donald A.; Beliaev, Alexander S. Share Save
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data Faria, Jose P.; Overbeek, Ross; Taylor, Ronald C.; Conrad, Neal; Vonstein, Veronika; Goelzer, Anne; Fromion, Vincent; Rocha, Miguel; Rocha, Isabel; Henry, Christopher S. Share Save
Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling Castelle, Cindy J.; Wrighton, Kelly C.; Thomas, Brian C.; Hug, Laura A.; Brown, Christopher T.; Wilkins, Michael J.; Frischkorn, Kyle R.; Tringe, Susannah G.; Singh, Andrea; Markillie, Lye Meng; Taylor, Ronald C.; Williams, Kenneth H.; Banfield, Jillian F. Share Save
Transcriptomic and proteomic dynamics in the metabolism of a diazotrophic cyanobacterium, Cyanothece sp PCC 7822 during a diurnal light-dark cycle Welkie, David; Zhang, Xiaohui; Markillie, Meng Lye; Taylor, Ronald; Orr, Galya; Jacobs, Jon; Bhide, Ketaki; Thimmapuram, Jyothi; Gritsenko, Marina; Mitchell, Hugh; Smith, Richard D.; Sherman, Louis A. Share Save
CO2 exposure at pressure impacts metabolism and stress responses in the model sulfate-reducing bacterium Desulfovibrio vulgaris strain Hildenborough Wilkins, Michael J.; Hoyt, David W.; Marshall, Matthew J.; Alderson, Paul A.; Plymale, Andrew E.; Markillie, L. Meng; Tucker, Abby E.; Walter, Eric D.; Linggi, Bryan E.; Dohnalkova, Alice C.; Taylor, Ron C. Share Save
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Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1 DeAngelis, Kristen M.; Sharma, Deepak; Varney, Rebecca; Simmons, Blake; Isern, Nancy G.; Markilllie, Lye Meng; Nicora, Carrie; Norbeck, Angela D.; Taylor, Ronald C.; Aldrich, Joshua T.; Robinson, Errol W. Share Save
REVERSE ENGINEERING ADVERSE OUTCOME PATHWAYS Perkins, Edward J.; Chipman, J. Kevin; Edwards, Stephen; Habib, Tanwir; Falciani, Francesco; Taylor, Ronald; Van Aggelen, Graham; Vulpe, Chris; Antczak, Philipp; Loguinov, Alexandre Share Save
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Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE) Deutsch, Eric W.; Ball, Catherine A.; Berman, Jules J.; Bova, G. Steven; Brazma, Alvis; Bumgarner, Roger E.; Campbell, David; Causton, Helen C.; Christiansen, Jeffrey H.; Daian, Fabrice; Dauga, Delphine; Davidson, Duncan R.; Gimenez, Gregory; Goo, Young Ah; Grimmond, Sean; Henrich, Thorsten; Herrmann, Bernhard G.; Johnson, Michael H.; Korb, Martin; Mills, Jason C.; Oudes, Asa J.; Parkinson, Helen E.; Pascal, Laura E.; Pollet, N. Icolas; Quackenbush, John; Ramialison, Mirana; Ringwald, Martin; Salgado, David; Sansone, Susanna-Assunta; Sherlock, Gavin; Stoeckert, Christian J., Jr.; Swedlow, Jason; Taylor, Ronald C.; Walashek, Laura; Warford, Anthony; Wilkinson, David G.; Zhou, Yi; Zon, Leonard I.; Liu, Alvin Y.; True, Lawrence D. Share Save
A guide to microarray experiments - an open letter to the scientific journals Ball, CA; Sherlock, G; Parkinson, H; Rocca-Sera, P; Brooksbank, C; Causton, HC; Cavalieri, D; Gaasterland, T; Hingamp, P; Holstege, F; Ringwald, M; Spellman, P; Stoeckert, CJ; Stewart, JE; Taylor, R; Brazma, A; Quackenbush, J Share Save
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