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Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches Niarakis, Anna; Ostaszewski, Marek; Mazein, Alexander; Kuperstein, Inna; Kutmon, Martina; Gillespie, Marc E.; Funahashi, Akira; Acencio, Marcio Luis; Hemedan, Ahmed; Aichem, Michael; Klein, Karsten; Czauderna, Tobias; Burtscher, Felicia; Yamada, Takahiro G.; Hiki, Yusuke; Hiroi, Noriko F.; Hu, Finterly; Pham, Nhung; Ehrhart, Friederike; Willighagen, Egon L.; Valdeolivas, Alberto; Dugourd, Aurelien; Messina, Francesco; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Soliman, Sylvain; Aghamiri, Sara Sadat; Puniya, Bhanwar Lal; Naldi, Aurelien; Helikar, Tomas; Singh, Vidisha; Fernandez, Marco Farinas; Bermudez, Viviam; Tsirvouli, Eirini; Montagud, Arnau; Noel, Vincent; Ponce-de-Leon, Miguel; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Luna, Augustin; Pinero, Janet; Furlong, Laura I.; Balaur, Irina; Rougny, Adrien; Jarosz, Yohan; Overall, Rupert W.; Phair, Robert; Perfetto, Livia; Matthews, Lisa; Rex, Devasahayam Arokia Balaya; Orlic-Milacic, Marija; Gomez, Luis Cristobal Monraz; De Meulder, Bertrand; Ravel, Jean Marie; Jassal, Bijay; Satagopam, Venkata; Wu, Guanming; Golebiewski, Martin; Gawron, Piotr; Calzone, Laurence; Beckmann, Jacques S.; Evelo, Chris T.; D'Eustachio, Peter; Schreiber, Falk; Saez-Rodriguez, Julio; Dopazo, Joaquin; Kuiper, Martin; Valencia, Alfonso; Wolkenhauer, Olaf; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
Data-driven model links BMIz to gene expression in pediatric asthma Dandenault, Vincent; Hachem, Nehme; Adcock, Ian M.; Andersson, Lars I.; Auffray, Charles; Chung, Fan K.; Dahlen, Sven-Erik; De Meulder, Bertrand; Djukanovic, Ratko; Howarth, Peter; Knowles, Richard G.; Krug, Norbert; Roberts, Amanda; Sousa, Ana R.; Sterk, Peter J.; Supple, David; Rao, Navin; Roberts, Graham; Uddin, Mohib; Wagers, Scott; Maitland-Van der Zee, Anke-Hilse; Longo, Cristina Share Save
Oropharyngeal Microbiota Clusters in Children with Asthma or Wheeze Associate with Allergy, Blood Transcriptomic Immune Pathways, and Exacerbation Risk Abdel-Aziz, Mahmoud I.; Thorsen, Jonathan; Hashimoto, Simone; Vijverberg, Susanne J. H.; Neerincx, Anne H.; Brinkman, Paul; van Aalderen, Wim; Stokholm, Jakob; Rasmussen, Morten Arendt; Roggenbuck-Wedemeyer, Michael; Vissing, Nadja H.; Mortensen, Martin Steen; Brejnrod, Asker Daniel; Fleming, Louise J.; Murray, Clare S.; Fowler, Stephen J.; Frey, Urs; Bush, Andrew; Singer, Florian; Hedlin, Gunilla; Nordlund, Bjorn; Shaw, Dominick E.; Chung, Kian Fan; Adcock, Ian M.; Djukanovic, Ratko; Auffray, Charles; Bansal, Aruna T.; Sousa, Ana R.; Wagers, Scott S.; Chawes, Bo Lund; Bonnelykke, Klaus; Sorensen, Soren Johannes; Kraneveld, Aletta D.; Sterk, Peter J.; Roberts, Graham; Bisgaard, Hans; Maitland-van der Zee, Anke H. Share Save
The role of inflammation in anxiety and depression in the European U-BIOPRED asthma cohorts Hou, Ruihua; Ye, Gang; Cheng, Xiaojing; Shaw, Dominick E.; Bakke, Per S.; Caruso, Massimo; Dahlen, Barbro; Dahlen, Sven-Erik; Fowler, Stephen J.; Horvath, Ildiko; Howarth, Peter; Krug, Norbert; Montuschi, Paolo; Sanak, Marek; Sandstrom, Thomas; Auffray, Charles; De Meulder, Bertrand; Sousa, Ana R.; Adcock, Ian M.; Chung, Kian Fan; Sterk, Peter J.; Skipp, Paul J.; Schofield, James; Djukanovic, Ratko Share Save
Unanswered questions in prostate cancer - findings of an international multi-stakeholder consensus by the PIONEER consortium Omar, Muhammad Imran; MacLennan, Steven; Ribal, Maria J.; Roobol, Monique J.; Dimitropoulos, Konstantinos; van den Broeck, Thomas; MacLennan, Sara J.; Axelsson, Susan Evans; Gandaglia, Giorgio; Willemse, Peter-Paul; Mastris, Ken; Ransohoff, John Butler; Devecseri, Zsuzsanna; Abbott, Thomas; De Meulder, Bertrand; Bjartell, Anders; Asiimwe, Alex; N'Dow, James; Smith, Emma; Plass, Karin; Mottet, Nicolas; Shepherd, Robert; Moris, Lisa; Lardas, Michael; Fossati, Nicola; Pang, Karl; Campi, Riccardo; Greco, Isabella; Gacci, Mauro; Serni, Sergio; Lonnerbro, Ragnar; Briganti, Alberto; Crosti, Daniele; Garzonio, Roberto; Faticoni, Martina; Bangma, Chris; Roest, Eliza; Breederland, Arjan; Remmers, Sebastiaan; Tilki, Derya; Auvinen, Anssi; Murtola, Teemu; Visakorpi, Tapio; Talala, Kirsi; Tammela, Teuvo; Siltari, Aino; Van Hemelrijck, Mieke; Beyer, Katharina; Lejeune, Stephane; Colette, Laurence; Caputova, Simona; Poli, Delielena; van Dorp, Sigrid; Byrne, Sophie; Fialho, Luz; Rowland, Ashley; Tapela, Neo; Ugolini, Francesco; Auffray, Charles; Taibi, Nesrine; Hijazy, Ayman; Saporta, Albert; Sun, Kai; Power, Shaun; Kermani, Nazanin Zounemat; van Bochove, Kees; Moinat, Maxim; Kalafati, Mirella; Tafreshiha, Azadeh; Bernini, Chiara; Hlavati, Kristina; Horgan, Denis; Fullwood, Louise; Holtorf, Marc; Lancet, Doron; Bernstein, Gabi; Tripathee, Sheela; Wirth, Manfred; Froehner, Michael; Brenner, Beate; Borkowetz, Angelika; Thomas, Christian; Horn, Friedemann; Reiche, Kristin; Kreuz, Markus; Josefsson, Andreas; Tandefelt, Delila Gasi; Hugosson, Jonas; Schalken, Jack; Huisman, Henkjan; Hofmarcher, Thomas; Lindgren, Peter; Andersson, Emelie; Fridhammar, Adam; Grijalva, Monica Tames; Verholen, Frank; Zong, Jihong; Williamson, Todd; Chandrawansa, Kumari; Waldeck, Reg; Bruno, Amanda; Herrera, Ronald; Nevedomskaya, Ekaterina; Fatoba, Samuel; Constantinovici, Niculae; Mohamed, Ateesha; Steinbeisser, Carl; Maass, Monika; Torremante, Patrizia; Dochy, Emmanuelle; Pisa, Federica; Voss, Marc Dietrich; Kiran, Amit; Papineni, Kishore; Wang-silvanto, Jing; Snijder, Robert; Wang, Xuewei; Lambrecht, Mark; Wolfinger, Russ; Antoni, Laurent; Servan, Angela; Pascoe, Katie; Robinson, Paul; Jaton, Bertrand; Bakkard, Daniel; Turunen, Heidi; Kilkku, Olavi; Pohjanjousi, Pasi; Voima, Olli; Nevalaita, Liina; Punakivi, Keijo; Reich, Christian; Seager, Sarah; Ratwani, Shilpa; Longden-Chapman, Elaine; Burke, Danny; Licour, Muriel; Payne, Sarah; Yong, Alan; Lujan, Flavia; Le Mare, Sophia; Hendrich, Jan; Bussmann, Michael; Juckeland, Guido; Kotik, Daniel Share Save
Systems prediction of chronic lung allograft dysfunction: Results and perspectives from the Cohort of Lung Transplantation and Systems prediction of Chronic Lung Allograft Dysfunction cohorts Pison, Christophe; Tissot, Adrien; Bernasconi, Eric; Royer, Pierre-Joseph; Roux, Antoine; Koutsokera, Angela; Coiffard, Benjamin; Renaud-Picard, Benjamin; Le Pavec, Jerome; Mordant, Pierre; Demant, Xavier; Villeneuve, Thomas; Mornex, Jean-Francois; Nemska, Simona; Frossard, Nelly; Brugiere, Olivier; Siroux, Valerie J.; Marsland, Benjamin; Foureau, Aurore; Botturi, Karine; Durand, Eugenie; Pellet, Johann; Danger, Richard; Auffray, Charles; Brouard, Sophie; Nicod, Laurent; Magnan, Antoine Share Save
Asthma and Wheeze Severity and the Oropharyngeal Microbiota in Children and Adolescents Thorsen, Jonathan; Stokholm, Jakob; Rasmussen, Morten Arendt; Roggenbuck-Wedemeyer, Michael; Vissing, Nadja H.; Mortensen, Martin S.; Brejnrod, Asker D.; Fleming, Louise; Bush, Andrew; Roberts, Graham; Singer, Florian; Frey, Urs; Hedlin, Gunilla; Nordlund, Bjorn; Murray, Clare S.; Abdel-Aziz, Mahmoud, I; Hashimoto, Simone; van Aalderen, Wim; Maitland-van der Zee, Anke H.; Shaw, Dominick; Fowler, Stephen J.; Sousa, Ana; Sterk, Peter J.; Chung, Kian Fan; Adcock, Ian M.; Djukanovic, Ratko; Auffray, Charles; Bansal, Aruna T.; Wagers, Scott; Chawes, Bo; Bonnelykke, Klaus; Sorensen, Soren Johannes; Bisgaard, Hans Share Save
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Clinical and transcriptomic features of persistent exacerbation-prone severe asthma in U-BIOPRED cohort Hoda, Uruj; Pavlidis, Stelios; Bansal, Aruna T.; Takahashi, Kentaro; Hu, Sile; Ng Kee Kwong, Francois; Rossios, Christos; Sun, Kai; Bhavsar, Pankaj; Loza, Matthew; Baribaud, Frederic; Chanez, Pascal; Fowler, Stephen J.; Horvath, Ildiko; Montuschi, Paolo; Singer, Florian; Musial, Jacek; Dahlen, Barbro; Krug, Norbert; Sandstrom, Thomas; Shaw, Dominic E.; Lutter, Rene; Fleming, Louise J.; Howarth, Peter H.; Caruso, Massimo; Sousa, Ana R.; Corfield, Julie; Auffray, Charles; De Meulder, Bertrand; Lefaudeux, Diane; Dahlen, Sven-Erik; Djukanovic, Ratko; Sterk, Peter J.; Guo, Yike; Adcock, Ian M.; Chung, Kian Fan Share Save
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
A multi-omics approach to delineate sputum microbiome-associated asthma inflammatory phenotypes Abdel-Aziz, Mahmoud I.; Vijverberg, Susanne J. H.; Neerincx, Anne H.; Brinkman, Paul; Wagener, Ariane H.; Riley, John H.; Sousa, Ana R.; Bates, Stewart; Wagers, Scott S.; De Meulder, Bertrand; Auffray, Charles; Wheelock, Asa M.; Bansal, Aruna T.; Caruso, Massimo; Chanez, Pascal; Uddin, Mohib; Corfield, Julie; Horvath, Ildiko; Krug, Norbert; Musial, Jacek; Sun, Kai; Shaw, Dominick E.; Sandstrom, Thomas; Montuschi, Paolo; Fowler, Stephen J.; Lutter, Rene; Djukanovic, Ratko; Howarth, Peter; Skipp, Paul; Sanak, Marek; Adcock, Ian M.; Chung, Kian Fan; Sterk, Peter J.; Kraneveld, Aletta D.; der Zee, Anke H. Maitland-van Share Save
Plasma proteins elevated in severe asthma despite oral steroid use and unrelated to Type-2 inflammation Mikus, Maria Sparreman; Kolmert, Johan; Andersson, Lars, I; Ostling, Jorgen; Knowles, Richard G.; Gomez, Cristina; Ericsson, Magnus; Thorngren, John-Olof; Khoonsari, Payam Emami; Dahlen, Barbro; Kupczyk, Maciej; De Meulder, Bertrand; Auffray, Charles; Bakke, Per S.; Beghe, Bianca; Bel, Elisabeth H.; Caruso, Massimo; Chanez, Pascal; Chawes, Bo; Fowler, Stephen J.; Gaga, Mina; Geiser, Thomas; Gjomarkaj, Mark; Horvath, Ildiko; Howarth, Peter H.; Johnston, Sebastian L.; Joos, Guy; Krug, Norbert; Montuschi, Paolo; Musial, Jacek; Nizankowska-Mogilnicka, Ewa; Olsson, Henric K.; Papi, Alberto; Rabe, Klaus F.; Sandstrom, Thomas; Shaw, Dominick E.; Siafakas, Nikolaos M.; Uhlen, Mathias; Riley, John H.; Bates, Stewart; Middelveld, Roelinde J. M.; Wheelock, Craig E.; Chung, Kian Fan; Adcock, Ian M.; Sterk, Peter J.; Djukanovic, Ratko; Nilsson, Peter; Dahlen, Sven-Erik; James, Anna Share Save
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
The Role of Artificial Intelligence in Managing Multimorbidity and Cancer Cesario, Alfredo; D'Oria, Marika; Calvani, Riccardo; Picca, Anna; Pietragalla, Antonella; Lorusso, Domenica; Daniele, Gennaro; Lohmeyer, Franziska Michaela; Boldrini, Luca; Valentini, Vincenzo; Bernabei, Roberto; Auffray, Charles; Scambia, Giovanni Share Save
Personalized Clinical Phenotyping through Systems Medicine and Artificial Intelligence Cesario, Alfredo; D'Oria, Marika; Bove, Francesco; Privitera, Giuseppe; Boskoski, Ivo; Pedicino, Daniela; Boldrini, Luca; Erra, Carmen; Loreti, Claudia; Liuzzo, Giovanna; Crea, Filippo; Armuzzi, Alessandro; Gasbarrini, Antonio; Calabresi, Paolo; Padua, Luca; Costamagna, Guido; Antonelli, Massimo; Valentini, Vincenzo; Auffray, Charles; Scambia, Giovanni Share Save
AsthmaMap: An interactive knowledge repository for mechanisms of asthma Mazein, Alexander; Ivanova, Olga; Balaur, Irina; Ostaszewski, Marek; Berzhitskaya, Valeriya; Serebriyskaya, Tatiana; Ligon, Thomas; Hasenauer, Jan; De Meulder, Bertrand; Overall, Rupert W.; Roy, Ludovic; Knowles, Richard G.; Wheelock, Craig E.; Dahlen, Sven-Erik; Chung, Kian Fan; Adcock, Ian M.; Roberts, Graham; Djukanovic, Ratko; Pellet, Johann; Gawron, Piotr; Balling, Rudi; Maitland-van der Zee, Anke H.; Schneider, Reinhard; Sterk, Peter J.; Auffray, Charles Share Save
Instability of sputum molecular phenotypes in U-BIOPRED severe asthma Kermani, Nazanin Z.; Pavlidis, Stelios; Xie, Jiaxing; Sun, Kai; Loza, Matthew; Baribaud, Fred; Fowler, Steve J.; Shaw, Dominic E.; Fleming, Louise J.; Howarth, Peter H.; Sousa, Ana R.; Corfield, Julie; Auffray, Charles; Meulder, Bertrand De; Sterk, Peter J.; Guo, Yike; Uddin, Mohib; Djukanovic, Ratko; Adcock, Ian M.; Chung, Kian Fan Share Save
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