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Reconstruction of the X and Y haplotypes in the genetically improved Abbassa nile tilapia genome assembly Etherington, Graham; Ciezarek, Adam; Mehta, Tarang; Barker, Tom; Durrant, Alex; Fraser, Fiona; Henderson, Suzanne; Irish, Naomi; Kaithakottil, Gemy; Knitlhoffer, Vanda; Ali, Shimaa; Trong, Trinh; Watkins, Chris; Swarbreck, David; Gharbi, Karim; Benzie, John; Haerty, Wilfried Share Save
Chromosome-level haplotype-resolved genome assembly of bread wheat's wild relative Aegilops mutica Grewal, Surbhi; Yang, Cai-yun; Krasheninnikova, Ksenia; Collins, Joanna; Wood, Jonathan M. D.; Ashling, Stephen; Scholefield, Duncan; Kaithakottil, Gemy G.; Swarbreck, David; Yao, Eric; Sen, Taner Z.; King, Ian P.; King, Julie Share Save
Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces Hill, Rowena; Grey, Michelle; Fedi, Mariano Olivera; Smith, Daniel; Canning, Gail; Ward, Sabrina J.; Irish, Naomi; Smith, Jade; Mcmillan, Vanessa E.; Hammond, Jess; Osborne, Sarah-Jane; Reynolds, Gillian; Smith, Ellie; Chancellor, Tania; Swarbreck, David; Hall, Neil; Palma-Guerrero, Javier; Hammond-Kosack, Kim E.; Mcmullan, Mark Share Save
Nuclear and Mitochondrial Genome Assemblies for the Endangered Wood-Decaying Fungus Somion occarium Hill, Rowena; Mcgowan, Jamie; Brabcova, Vendula; Mctaggart, Seanna; Irish, Naomi; Barker, Tom; Knitlhoffer, Vanda; Lucchini, Sacha; Baker, Kendall; Catchpole, Leah; Watkins, Chris; Gharbi, Karim; Kaithakottil, Gemy; Tracey, Alan; Wood, Jonathan M. D.; Tomsovsky, Michal; Baldrian, Petr; Swarbreck, David; Hall, Neil Share Save
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The genome sequence of the Violet Carpenter Bee, Xylocopa violacea (Linnaeus, 1785): a hymenopteran species undergoing range expansion Nash, Will J.; Man, Angela; McTaggart, Seanna; Baker, Kendall; Barker, Tom; Catchpole, Leah; Durrant, Alex; Gharbi, Karim; Irish, Naomi; Kaithakottil, Gemy; Ku, Debby; Providence, Aaliyah; Shaw, Felix; Swarbreck, David; Watkins, Chris; McCartney, Ann M.; Formenti, Giulio; Mouton, Alice; Vella, Noel; von Reumont, Bjoern M.; Vella, Adriana; Haerty, Wilfried Share Save
Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids McGowan, Jamie; Kilias, Estelle S.; Alacid, Elisabet; Lipscombe, James; Jenkins, Benjamin H.; Gharbi, Karim; Kaithakottil, Gemy G.; Macaulay, Iain C.; McTaggart, Seanna; Warring, Sally D.; Richards, Thomas A.; Hall, Neil; Swarbreck, David Share Save
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus (vol 14, 876, 2023) Edwards, Anne; Njaci, Isaac; Sarkar, Abhimanyu; Jiang, Zhouqian; Kaithakottil, Gemy George; Moore, Christopher; Cheema, Jitender; Stevenson, Clare E. M.; Rejzek, Martin; Novak, Petr; Vigouroux, Marielle; Vickers, Martin; Wouters, Roland H. M.; Paajanen, Pirita; Steuernagel, Burkhard; Moore, Jonathan D.; Higgins, Janet; Swarbreck, David; Martens, Stefan; Kim, Colin Y.; Weng, Jing-Ke; Mundree, Sagadevan; Kilian, Benjamin; Kumar, Shiv; Loose, Matt; Yant, Levi; Macas, Jiri; Wang, Trevor L.; Martin, Cathie; Emmrich, Peter M. F. Share Save
Genomics and biochemical analyses reveal a metabolon key to β-L-ODAP biosynthesis in Lathyrus sativus Edwards, Anne; Njaci, Isaac; Sarkar, Abhimanyu; Jiang, Zhouqian; Kaithakottil, Gemy George; Moore, Christopher; Cheema, Jitender; Stevenson, Clare E. M.; Rejzek, Martin; Novak, Petr; Vigouroux, Marielle; Vickers, Martin; Wouters, Roland H. M.; Paajanen, Pirita; Steuernagel, Burkhard; Moore, Jonathan D.; Higgins, Janet; Swarbreck, David; Martens, Stefan; Kim, Colin Y.; Weng, Jing-Ke; Mundree, Sagadevan; Kilian, Benjamin; Kumar, Shiv; Loose, Matt; Yant, Levi; Macas, Jiri; Wang, Trevor L.; Martin, Cathie; Emmrich, Peter M. F. Share Save
Chromosome-level genome sequence of the Genetically Improved Farmed Tilapia (GIFT, Oreochromis niloticus) highlights regions of introgression with O. mossambicus Etherington, G. J.; Nash, W.; Ciezarek, A.; Mehta, T. K.; Barria, A.; Penaloza, C.; Khan, M. G. Q.; Durrant, A.; Forrester, N.; Fraser, F.; Irish, N.; Kaithakottil, G. G.; Lipscombe, J.; Trong, T.; Watkins, C.; Swarbreck, D.; Angiolini, E.; Cnaani, A.; Gharbi, K.; Houston, R. D.; Benzie, J. A. H.; Haerty, W. Share Save
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Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes (vol 23, 42, 2022) Wright, David J.; Hall, Nicola A. L.; Irish, Naomi; Man, Angela L.; Glynn, Will; Mould, Arne; De Los Angeles, Alejandro; Angiolini, Emily; Swarbreck, David; Gharbi, Karim; Tunbridge, Elizabeth M.; Haerty, Wilfried Share Save
Standards recommendations for the Earth BioGenome Project Lawniczak, Mara K. N.; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin; Wei, Xiaofeng; Archibald, John M.; Baker, William J.; Belov, Katherine; Blaxter, Mark L.; Bonet, Tomas Marques; Childers, Anna K.; Coddington, Jonathan A.; Crandall, Keith A.; Crawford, Andrew J.; Davey, Robert P.; Di Palma, Federica; Fang, Qi; Haerty, Wilfried; Hall, Neil; Hoff, Katharina J.; Howe, Kerstin; Jarvis, Erich D.; Johnson, Warren E.; Johnson, Rebecca N.; Kersey, Paul J.; Liu, Xin; Lopez, Jose Victor; Myers, Eugene W.; Pettersson, Olga Vinnere; Phillippy, Adam M.; Poelchau, Monica F.; Pruitt, Kim D.; Rhie, Arang; Castilla-Rubio, Juan Carlos; Sahu, Sunil Kumar; Salmon, Nicholas A.; Soltis, Pamela S.; Swarbreck, David; Thibaud-Nissen, Francoise; Wang, Sibo; Wegrzyn, Jill L.; Zhang, Guojie; Zhang, He; Lewin, Harris A.; Richards, Stephen Share Save
Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes Wright, David J.; Hall, Nicola A. L.; Irish, Naomi; Man, Angela L.; Glynn, Will; Mould, Arne; De los Angeles, Alejandro; Angiolini, Emily; Swarbreck, David; Gharbi, Karim; Tunbridge, Elizabeth M.; Haerty, Wilfried Share Save
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches (vol 9, 143, 2021) Huws, Sharon A.; Edwards, Joan E.; Lin, Wanchang; Rubino, Francesco; Alston, Mark; Swarbreck, David; Caim, Shabhonam; Stevens, Pauline Rees; Pachebat, Justin; Won, Mi-Young; Oyama, Linda B.; Creevey, Christopher J.; Kingston-Smith, Alison H. Share Save
Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches Huws, Sharon A.; Edwards, Joan E.; Lin, Wanchang; Rubino, Francesco; Alston, Mark; Swarbreck, David; Caim, Shabhonam; Stevens, Pauline Rees; Pachebat, Justin; Won, Mi-Young; Oyama, Linda B.; Creevey, Christopher J.; Kingston-Smith, Alison H. Share Save
Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential Rabanus-Wallace, M. Timothy; Hackauf, Bernd; Mascher, Martin; Lux, Thomas; Wicker, Thomas; Gundlach, Heidrun; Baez, Mariana; Houben, Andreas; Mayer, Klaus F. X.; Guo, Liangliang; Poland, Jesse; Pozniak, Curtis J.; Walkowiak, Sean; Melonek, Joanna; Praz, Coraline R.; Schreiber, Mona; Budak, Hikmet; Heuberger, Matthias; Steuernagel, Burkhard; Wulff, Brande; Boerner, Andreas; Byrns, Brook; Cizkova, Jana; Fowler, D. Brian; Fritz, Allan; Himmelbach, Axel; Kaithakottil, Gemy; Keilwagen, Jens; Keller, Beat; Konkin, David; Larsen, Jamie; Li, Qiang; Myskow, Beata; Padmarasu, Sudharsan; Rawat, Nidhi; Sesiz, Ugur; Biyiklioglu-Kaya, Sezgi; Sharpe, Andy; Simkova, Hana; Small, Ian; Swarbreck, David; Toegelova, Helena; Tsvetkova, Natalia; Voylokov, Anatoly V.; Vrana, Jan; Bauer, Eva; Bolibok-Bragoszewska, Hanna; Dolezel, Jaroslav; Hall, Anthony; Jia, Jizeng; Korzun, Viktor; Laroche, Andre; Ma, Xue-Feng; Ordon, Frank; Ozkan, Hakan; Rakoczy-Trojanowska, Monika; Scholz, Uwe; Schulman, Alan H.; Siekmann, Dorthe; Stojalowski, Stefan; Tiwari, Vijay K.; Spannagl, Manuel; Stein, Nils Share Save
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