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Christopher A. Cassa

Harvard Medical School

27H-index
87Paper Count
4.1KCitation Count
Published Papers 27
Publication Date
Extracting and calibrating evidence of variant pathogenicity from population biobank data
err2025-07-09
err0
PREAI
errVineel Bhat; Tian Yu; Lara Brown; Vikas Pejaver; Matthew Lebo; Steven Harrison; Christopher A. Cassa
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FUSE: Improving the estimation and imputation of variant impacts in functional screening
err2024-10-01
err0
errOAAI
errYu, Tian; Fife, James D.; Bhat, Vineel; Adzhubey, Ivan; Sherwood, Richard; Cassa, Christopher A.
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Joint genotypic and phenotypic outcome modeling improves base editing variant effect quantification
err2024-04-24
err2
PREAI
errRyu, Jayoung; Barkal, Sam; Yu, Tian; Jankowiak, Martin; Zhou, Yunzhuo; Francoeur, Matthew; Phan, Quang Vinh; Li, Zhijian; Tognon, Manuel; Brown, Lara; Love, Michael I.; Bhat, Vineel; Lettre, Guillaume; Ascher, David B.; Cassa, Christopher A.; Sherwood, Richard I.; Pinello, Luca
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Systematic elucidation of genetic mechanisms underlying cholesterol uptake
err2023-05-01
err4
errOAAI
errHamilton, Marisa C.; Fife, James D.; Akinci, Ersin; Yu, Tian; Khowpinitchai, Benyapa; Cha, Minsun; Barkal, Sammy; Thi, Thi Tun; Yeo, Grace H. T.; Barroso, Juan Pablo Ramos; Francoeur, Matthew Jake; Velimirovic, Minja; Gifford, David K.; Lettre, Guillaume; Yu, Haojie; Cassa, Christopher A.; Sherwood, Richard I.
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DeMAG predicts the effects of variants in clinically actionable genes by integrating structural and evolutionary epistatic features
err2023-04-19
err4
errOAAI
errLuppino, Federica; Adzhubei, Ivan A.; Cassa, Christopher A.; Toth-Petroczy, Agnes
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The missing link between genetic association and regulatory function
err2022-12-14
err57
errOAAI
errConnally, Noah J.; Nazeen, Sumaiya; Lee, Daniel; Shi, Huwenbo; Stamatoyannopoulos, John; Chun, Sung; Cotsapas, Chris; Cassa, Christopher A.; Sunyaev, Shamil R.; Flint, Jonathan
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Variants in STXBP3 are Associated with Very Early Onset Inflammatory Bowel Disease, Bilateral Sensorineural Hearing Loss and Immune Dysregulation
err2021-04-23
err9
errOAAI
errOuahed, Jodie; Kelsen, Judith R.; Spessott, Waldo A.; Kooshesh, Kameron; Sanmillan, Maria L.; Dawany, Noor; Sullivan, Kathleen E.; Hamilton, Kathryn E.; Slowik, Voytek; Nejentsev, Sergey; Neves, Joao Farela; Flores, Helena; Chung, Wendy K.; Wilson, Ashley; Anyane-Yeboa, Kwame; Wou, Karen; Jain, Preti; Field, Michael; Tollefson, Sophia; Dent, Maiah H.; Li, Dalin; Naito, Takeo; McGovern, Dermot P. B.; Kwong, Andrew C.; Taliaferro, Faith; Ordovas-Montanes, Jose; Horwitz, Bruce H.; Kotlarz, Daniel; Klein, Christoph; Evans, Jonathan; Dorsey, Jill; Warner, Neil; Elkadri, Abdul; Muise, Aleixo M.; Goldsmith, Jeffrey; Thompson, Benjamin; Engelhardt, Karin R.; Cant, Andrew J.; Hambleton, Sophie; Barclay, Andrew; Toth-Petroczy, Agnes; Vuzman, Dana; Carmichael, Nikkola; Bodea, Corneliu; Cassa, Christopher A.; Devoto, Marcella; Maas, Richard L.; Behrens, Edward M.; Giraudo, Claudio G.; Snapper, Scott B.
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Evidence for secondary-variant genetic burden and non-random distribution across biological modules in a recessive ciliopathy
err2020-10-12
err27
errOAAI
errKousi, Maria; Soylemez, Onuralp; Ozanturk, Aysegul; Mourtzi, Niki; Akle, Sebastian; Jungreis, Irwin; Muller, Jean; Cassa, Christopher A.; Brand, Harrison; Mokry, Jill Anne; Wolf, Maxim Y.; Sadeghpour, Azita; McFadden, Kelsey; Lewis, Richard A.; Talkowski, Michael E.; Dollfus, Helene; Kellis, Manolis; Davis, Erica E.; Sunyaev, Shamil R.; Katsanis, Nicholas
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Polygenic background modifies penetrance of monogenic variants for tier 1 genomic conditions
err2020-08-20
err257
errOAAI
errFahed, Akl C.; Wang, Minxian; Homburger, Julian R.; Patel, Aniruddh P.; Bick, Alexander G.; Neben, Cynthia L.; Lai, Carmen; Brockman, Deanna; Philippakis, Anthony; Ellinor, Patrick T.; Cassa, Christopher A.; Lebo, Matthew; Ng, Kenney; Lander, Eric S.; Zhou, Alicia Y.; Kathiresan, Sekar; Khera, Amit V.
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Association of Rare Pathogenic DNA Variants for Familial Hypercholesterolemia, Hereditary Breast and Ovarian Cancer Syndrome, and Lynch Syndrome With Disease Risk in Adults According to Family History
err2020-04-29
err64
errOAAI
errPatel, Aniruddh P.; Wang, Minxian; Fahed, Akl C.; Mason-Suares, Heather; Brockman, Deanna; Pelletier, Renee; Amr, Sami; Machini, Kalotina; Hawley, Megan; Witkowski, Leora; Koch, Christopher; Philippakis, Anthony; Cassa, Christopher A.; Ellinor, Patrick T.; Kathiresan, Sekar; Ng, Kenney; Lebo, Matthew; Khera, Amit, V
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Mutations in RABL3 alter KRAS prenylation and are associated with hereditary pancreatic cancer
err2019-08-12
err44
errOAAI
errNissim, Sahar; Leshchiner, Ignaty; Mancias, Joseph D.; Greenblatt, Matthew B.; Maertens, Ophelia; Cassa, Christopher A.; Rosenfeld, Jill A.; Cox, Andrew G.; Hedgepeth, John; Wucherpfennig, Julia I.; Kim, Andrew J.; Henderson, Jake E.; Gonyo, Patrick; Brandt, Anthony; Lorimer, Ellen; Unger, Bethany; Prokop, Jeremy W.; Heidel, Jerry R.; Wang, Xiao-Xu; Ukaegbu, Chinedu I.; Jennings, Benjamin C.; Paulo, Joao A.; Gableske, Sebastian; Fierke, Carol A.; Getz, Gad; Sunyaev, Shamil R.; Harper, J. Wade; Cichowski, Karen; Kimmelman, Alec C.; Houvras, Yariv; Syngal, Sapna; Williams, Carol; Goessling, Wolfram
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Applicability of the Mutation-Selection Balance Model to Population Genetics of Heterozygous Protein-Truncating Variants in Humans
err2019-04-19
err15
errOAAI
errWeghorn, Donate; Balick, Daniel J.; Cassa, Christopher; Kosmicki, Jack A.; Daly, Mark J.; Beier, David R.; Sunyaev, Shamil R.
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Reply to 'Selective effects of heterozygous protein-truncating variants'
err2018-11-26
err2
errOAAI
errCassa, Christopher A.; Weghorn, Donate; Balick, Daniel J.; Jordan, Daniel M.; Nusinow, David; Samocha, Kaitlin E.; O'Donnell-Luria, Anne; MacArthur, Daniel G.; Daly, Mark J.; Beier, David R.; Sunyaev, Shamil R.
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A literature review at genome scale: improving clinical variant assessment
err2018-09-01
err1
errOAAI
errCassa, Christopher A.; Jordan, Daniel M.; Adzhubei, Ivan; Sunyaev, Shamil
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MUTATIONS IN STXBP3 CONTRIBUTE TO VERY EARLY ONSET OF IBD, IMMUNODEFICIENCY AND HEARING LOSS
err2018-01-01
err0
PREAI
errKelsen, Judith R.; Ouahed, Jodie; Spessott, Waldo A.; Kooshesh, Kameron; Sanmillan, Maria L.; Dawany, Noor; Sullivan, Kathleen E.; Hamilton, Kathryn; Slowik, Voytek; Nejentsev, Sergey; Neves, Joao Farela; Flores, Helena; Chung, Wendy K.; Wilson, Ashley; Yeboa, Kwame Anyane; Wou, Karen; Jain, Preti; Tollefson, Sophia; Evans, Jonathan; Warner, Neil; Muise, Alexio; Goldsmith, Jeffrey; Toth-Petroczy, Agnes; Vuzman, Dana; Carmichael, Nikkola; Bodea, Corneliu; Cassa, Christopher; Devoto, Marcella; Maas, Richard L.; Behrens, Edward M.; Snapper, Scott B.; Giraudo, Claudio G.
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Mutations in RABL3 alter RAS prenylation and are associated with hereditary pancreatic cancer
err2017-07-01
err0
PREAI
errNissim, Sahar; Leshchiner, Ignaty; Mancias, Joseph D.; Greenblatt, Matthew B.; Maertens, Ophelia; Cassa, Christopher A.; Rosenfeld, Jill A.; Cox, Andrew G.; Hedgepeth, John; Wucherpfennig, Julia; Kim, Andrew J.; Henderson, Jake E.; Gonyo, Patrick; Brandt, Anthony; Lorimer, Ellen; Unger, Bethany; Prokop, Jeremy W.; Heidel, Jeremy W.; Wang, Xiao-Xu; Ukaegbu, Chinedu I.; Getz, Gad; Sunyaev, Shamil R.; Harper, J. Wade; Cichowski, Karen; Kimmelman, Alec C.; Houvras, Yariv; Syngal, Sapna; Williams, Carol; Goessling, Wolfram
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Estimating the selective effects of heterozygous protein-truncating variants from human exome data
err2017-04-03
err102
errOAAI
errCassa, Christopher A.; Weghorn, Donate; Balick, Daniel J.; Jordan, Daniel M.; Nusinow, David; Samocha, Kaitlin E.; O'Donnell-Luria, Anne; MacArthur, Daniel G.; Daly, Mark J.; Beier, David R.; Sunyaev, Shamil R.
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Mitigating False-Positive Associations in Rare Disease Gene Discovery
err2015-09-17
err19
errOAAI
errAkle, Sebastian; Chun, Sung; Jordan, Daniel M.; Cassa, Christopher A.
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