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S

Svetlana Karamycheva

national institutes of health (nih) - usa

16H-index
40Paper Count
4.1KCitation Count
Published Papers 18
Publication Date
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Spatial-temporal genome analysis and its application for the prediction of functional systems in bacteria and archaea
errmBio
IF4.7
err2025-12-01
err0
PREAI
errKaramycheva, Svetlana; Wolf, Yuri I.; Koonin, Eugene V.; Makarova, Kira S.
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COG database update 2024
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-04
err1
errOAAI
errGalperin, Michael Y.; Alvarez, Roberto Vera; Karamycheva, Svetlana; Makarova, Kira S.; Wolf, Yuri, I; Landsman, David; Koonin, Eugene, V
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Regulatory sequence-based discovery of anti-defense genes in archaeal viruses
errNATURE COMMUNICATIONS
IF15.7
err2024-05-02
err1
errOAAI
errBhoobalan-Chitty, Yuvaraj; Xu, Shuanshuan; Martinez-Alvarez, Laura; Karamycheva, Svetlana; Makarova, Kira S.; Koonin, Eugene V.; Peng, Xu
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errSave
Computational analysis of genes with lethal knockout phenotype and prediction of essential genes in archaea
errMBIO
IF4.7
err2024-02-14
err0
errOAAI
errMakarova, Kira S.; Zhang, Changyi; Wolf, Yuri I.; Karamycheva, Svetlana; Whitaker, Rachel J.; Koonin, Eugene V.
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errSave
Unidirectional gene pairs in archaea and bacteria require overlaps or very short intergenic distances for translational coupling via termination-reinitiation and often encode subunits of heteromeric complexes
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2023-11-09
err2
errOAAI
errHuber, Madeleine; Vogel, Nico; Borst, Andreas; Pfeiffer, Friedhelm; Karamycheva, Svetlana; Wolf, Yuri I.; Koonin, Eugene V.; Soppa, Joerg
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Compensatory relationship between low-complexity regions and gene paralogy in the evolution of prokaryotes
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-04-10
err4
errOAAI
errPersi, Erez; Wolf, Yuri I.; Karamycheva, Svetlana; Makarova, Kira S.; Koonin, Eugene, V
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errSave
Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions
errBIOLOGY DIRECT
IF4.9
err2022-08-30
err5
errOAAI
errKaramycheva, Svetlana; Wolf, Yuri, I; Persi, Erez; Koonin, Eugene, V; Makarova, Kira S.
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errSave
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis
errBIOLOGY DIRECT
IF4.9
err2022-03-21
err11
errOAAI
errMakarova, Kira S.; Blackburne, Brittney; Wolf, Yuri, I; Nikolskaya, Anastasia; Karamycheva, Svetlana; Espinoza, Marlene; Barry, Clifton E., III; Bewley, Carole A.; Koonin, Eugene, V
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errSave
A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2021-08-18
err1
errOAAI
errMakarova, Kira S.; Wolf, Yuri I.; Karamycheva, Svetlana; Koonin, Eugene V.
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errSave
Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts
errMBIO
IF4.7
err2019-06-25
err42
errOAAI
errMakarova, Kira S.; Wolf, Yuri I.; Karamycheva, Svetlana; Zhang, Dapeng; Aravind, L.; Koonin, Eugene V.
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errSave
Local admixture of amplified and diversified secreted pathogenesis determinants shapes mosaic Toxoplasma gondii genomes
errNATURE COMMUNICATIONS
IF15.7
err2016-01-07
err221
errOAAI
errLorenzi, Hernan; Khan, Asis; Behnke, Michael S.; Namasivayam, Sivaranjani; Swapna, Lakshmipuram S.; Hadjithomas, Michalis; Karamycheva, Svetlana; Pinney, Deborah; Brunk, Brian P.; Ajioka, James W.; Ajzenberg, Daniel; Boothroyd, John C.; Boyle, Jon P.; Darde, Marie L.; Diaz-Miranda, Maria A.; Dubey, Jitender P.; Fritz, Heather M.; Gennari, Solange M.; Gregory, Brian D.; Kim, Kami; Saeij, Jeroen P. J.; Su, Chunlei; White, Michael W.; Zhu, Xing-Quan; Howe, Daniel K.; Rosenthal, Benjamin M.; Grigg, Michael E.; Parkinson, John; Liu, Liang; Kissinger, Jessica C.; Roos, David S.; Sibley, L. David
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errSave
MTGD: The Medicago truncatula Genome Database
errPLANT AND CELL PHYSIOLOGY
IF4
err2014-11-28
err57
errOAAI
errKrishnakumar, Vivek; Kim, Maria; Rosen, Benjamin D.; Karamycheva, Svetlana; Bidwell, Shelby L.; Tang, Haibao; Town, Christopher D.
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errSave
Araport: the Arabidopsis Information Portal
errNUCLEIC ACIDS RESEARCH
IF13.1
err2014-11-20
err169
errOAAI
errKrishnakumar, Vivek; Hanlon, Matthew R.; Contrino, Sergio; Ferlanti, Erik S.; Karamycheva, Svetlana; Kim, Maria; Rosen, Benjamin D.; Cheng, Chia-Yi; Moreira, Walter; Mock, Stephen A.; Stubbs, Joseph; Sullivan, Julie M.; Krampis, Konstantinos; Miller, Jason R.; Micklem, Gos; Vaughn, Matthew; Town, Christopher D.
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errSave
Whole genome single nucleotide polymorphism based phylogeny of Francisella tularensis and its application to the development of a strain typing assay
errBMC MICROBIOLOGY
IF4.2
err2009-10-07
err46
errOAAI
errPandya, Gagan A.; Holmes, Michael H.; Petersen, Jeannine M.; Pradhan, Sonal; Karamycheva, Svetlana A.; Wolcott, Mark J.; Molins, Claudia; Jones, Marcus; Schriefer, Martin E.; Fleischmann, Robert D.; Peterson, Scott N.
errShare
errSave
Comparative analyses of potato expressed sequence tag libraries
errPLANT PHYSIOLOGY
IF6.9
err2003-02-01
err168
errOAAI
errRonning, CM; Stegalkina, SS; Ascenzi, RA; Bougri, O; Hart, AL; Utterbach, TR; Vanaken, SE; Riedmuller, SB; White, JA; Cho, J; Pertea, GM; Lee, Y; Karamycheva, S; Sultana, R; Tsai, J; Quackenbush, J; Griffiths, HM; Restrepo, S; Smart, CD; Fry, WE; van der Hoeven, R; Tanksley, S; Zhang, PF; Jin, HL; Yamamoto, ML; Baker, BJ; Buell, CR
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errSave
Cross-referencing eukaryotic genomes: TIGR orthologous gene alignments (TOGA)
errGENOME RESEARCH
IF5.5
err2002-03-01
err150
errOAAI
errLee, Y; Sultana, R; Pertea, G; Cho, J; Karamycheva, S; Tsai, J; Parvizi, B; Cheung, F; Antonescu, V; White, J; Holt, I; Liang, F; Quackenbush, J
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errSave
Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle
errGENOME RESEARCH
IF5.5
err2001-04-01
err115
errOAAI
errSmith, TPL; Grosse, WM; Freking, BA; Roberts, AJ; Stone, RT; Casas, E; Wray, JE; White, J; Cho, J; Fahrenkrug, SC; Bennett, GL; Heaton, MP; Laegreid, WW; Rohrer, GA; Chitko-McKown, CG; Pertea, G; Holt, I; Karamycheva, S; Liang, F; Quackenbush, J; Keele, JW
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errSave
Gene Index analysis of the human genome estimates approximately 120,000 genes
errNATURE GENETICS
IF31.8
err2000-06-01
err243
PREAI
errLiang, F; Holt, I; Pertea, G; Karamycheva, S; Salzberg, SL; Quackenbush, J
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
S
Steven L. Salzberg
H-index: 160 · Papers: 599
L
L. Aravind
H-index: 140 · Papers: 499
Y
Yuri I. Wolf
H-index: 121 · Papers: 518
J
J. P. Dubey
H-index: 119 · Papers: 1.3K
C
Clifton E. Barry
H-index: 113 · Papers: 448
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