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David Thybert

university of north carolina

20H-index
54Paper Count
6.7KCitation Count
Published Papers 20
Publication Date
Tissue-resident macrophages specifically express Lactotransferrin and Vegfc during ear pinna regeneration in spiny mice
err2024-02-01
err4
PREAI
errSimkin, Jennifer; Aloysius, Ajoy; Adam, Mike; Safaee, Fatemeh; Donahue, Renee R.; Biswas, Shishir; Lakhani, Zohaib; Gensel, John C.; Thybert, David; Potter, Steven; Seifert, Ashley W.
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Ensembl 2023
err2022-11-01
err378
errOAAI
errMartin, Fergal J.; Amode, M. Ridwan; Aneja, Alisha; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Bignell, Alexandra; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Charkhchi, Mehrnaz; Cockburn, Alexander; Fiorretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Guijarro, Cristi; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Marques-Coelho, Diego; Marugan, Jose Carlos; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraiva-Agostinho, Nuno; Schuilenburg, Helen; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Stark, William; Steed, Emily; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Szpak, Michal; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Wass, Elizabeth; Willhoft, Natalie; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Tate, John; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Ruffier, Magali; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Howe, Kevin L.; Harrison, Peter W.; Yates, Andrew D.; Flicek, Paul
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The Quest for Orthologs orthology benchmark service in 2022
err2022-05-12
err30
errOAAI
errNevers, Yannis; Jones, Tamsin E. M.; Jyothi, Dushyanth; Yates, Bethan; Ferret, Meritxell; Portell-Silva, Laura; Codo, Laia; Cosentino, Salvatore; Marcet-Houben, Marina; Vlasova, Anna; Poidevin, Laetitia; Kress, Arnaud; Hickman, Mark; Persson, Emma; Pilizota, Ivana; Guijarro-Clarke, Cristina; Iwasaki, Wataru; Lecompte, Odile; Sonnhammer, Erik; Roos, David S.; Gabaldon, Toni; Thybert, David; Thomas, Paul D.; Hu, Yanhui; Emms, David M.; Bruford, Elspeth; Capella-Gutierrez, Salvador; Martin, Maria J.; Dessimoz, Christophe; Altenhoff, Adrian
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Ensembl 2022
err2021-11-17
err1.1K
errOAAI
errCunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
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The Ensembl COVID-19 resource: ongoing integration of public SARS-CoV-2 data
err2021-10-11
err8
errOAAI
errDe Silva, Nishadi H.; Bhai, Jyothish; Chakiachvili, Marc; Contreras-Moreira, Bruno; Cummins, Carla; Frankish, Adam; Gall, Astrid; Genez, Thiago; Howe, Kevin L.; Hunt, Sarah E.; Martin, Fergal J.; Moore, Benjamin; Ogeh, Denye; Parker, Anne; Parton, Andrew; Ruffier, Magali; Sakthivel, Manoj Pandian; Sheppard, Dan; Tate, John; Thormann, Anja; Thybert, David; Trevanion, Stephen J.; Winterbottom, Andrea; Zerbino, Daniel R.; Finn, Robert D.; Flicek, Paul; Yates, Andrew D.
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A rather dry subject; investigating the study of arid-associated microbial communities
err2020-12-01
err13
errOAAI
errOsborne, Peter; Hall, Lindsay J.; Kronfeld-Schor, Noga; Thybert, David; Haerty, Wilfried
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errSave
Ensembl 2021
err2020-11-02
err1.1K
errOAAI
errHowe, Kevin L.; Achuthan, Premanand; Allen, James; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Azov, Andrey G.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Rin; Davidson, Claire; Dodiya, Kamalkumar; El Houdaigui, Bilal; Fatima, Reham; Gall, Astrid; Giron, Carlos Garcia; Grego, Tiago; Guijarro-Clarke, Cristina; Haggerty, Leanne; Hemrom, Anmol; Hourlier, Thibaut; Izuogu, Osagie G.; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Martinez, Jose Gonzalez; Marugan, Jose Carlos; Maurel, Thomas; McMahon, Aoife C.; Mohanan, Shamika; Moore, Benjamin; Muffato, Matthieu; Oheh, Denye N.; Paraschas, Dimitrios; Parker, Anne; Parton, Andrew; Prosovetskaia, Irina; Sakthivel, Manoj P.; Salam, Ahamed I. Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, N.; Steed, Emily; Szpak, Michal; Szuba, Marek; Taylor, Kieron; Thormann, Anja; Threadgold, Glen; Walts, Brandon; Winterbottom, Andrea; Chakiachvili, Marc; Chaubal, Ameya; De Silva, Nishadi; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; IIsley, Garth R.; Langridge, Nick; Loveland, Jane E.; Martin, Fergal J.; Mudge, Jonathan M.; Morales, Joanella; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
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Transcriptional activity and strain-specific history of mouse pseudogenes
err2020-07-29
err20
errOAAI
errSisu, Cristina; Muir, Paul; Frankish, Adam; Fiddes, Ian; Diekhans, Mark; Thybert, David; Odom, Duncan T.; Flicek, Paul; Keane, Thomas M.; Hubbard, Tim; Harrow, Jennifer; Gerstein, Mark
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Chromosome assembly of large and complex genomes using multiple references
err2018-10-19
err56
errOAAI
errKolmogorov, Mikhail; Armstrong, Joel; Raney, Brian J.; Streeter, Ian; Dunn, Matthew; Yang, Fengtang; Odom, Duncan; Flicek, Paul; Keane, Thomas M.; Thybert, David; Paten, Benedict; Son Pham
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Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
err2018-10-01
err151
errOAAI
errLilue, Jingtao; Doran, Anthony G.; Fiddes, Ian T.; Abrudan, Monica; Armstrong, Joel; Bennett, Ruth; Chow, William; Collins, Joanna; Collins, Stephan; Czechanski, Anne; Danecek, Petr; Diekhans, Mark; Dolle, Dirk-Dominik; Dunn, Matt; Durbin, Richard; Earl, Dent; Ferguson-Smith, Anne; Flicek, Paul; Flint, Jonathan; Frankish, Adam; Fu, Beiyuan; Gerstein, Mark; Gilbert, James; Goodstadt, Leo; Harrow, Jennifer; Howe, Kerstin; Ibarra-Soria, Ximena; Kolmogorov, Mikhail; Lelliott, Chris J.; Logan, Darren W.; Loveland, Jane; Mathews, Clayton E.; Mott, Richard; Muir, Paul; Nachtweide, Stefanie; Navarro, Fabio C. P.; Odom, Duncan T.; Park, Naomi; Pelan, Sarah; Pham, Son K.; Quail, Mike; Reinholdt, Laura; Romoth, Lars; Shirley, Lesley; Sisu, Cristina; Sjoberg-Herrera, Marcela; Stanke, Mario; Steward, Charles; Thomas, Mark; Threadgold, Glen; Thybert, David; Torrance, James; Wong, Kim; Wood, Jonathan; Yalcin, Binnaz; Yang, Fengtang; Adams, David J.; Paten, Benedict; Keane, Thomas M.
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Repeat associated mechanisms of genome evolution and function revealed by the &ITMus caroli&IT and &ITMus pahari&IT genomes
err2018-03-21
err84
errOAAI
errThybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, Paul
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Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat
err2017-12-22
err4
errOAAI
errMartin-Galvez, David; de Segonzac, Denis Dunoyer; Ma, Man Chun John; Kwitek, Anne E.; Thybert, David; Flicek, Paul
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Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution
err2017-10-23
err53
errOAAI
errWong, Emily S.; Schmitt, Bianca M.; Kazachenka, Anastasiya; Thybert, David; Redmond, Aisling; Connor, Frances; Rayner, Tim F.; Feig, Christine; Ferguson-Smith, Anne C.; Marioni, John C.; Odom, Duncan T.; Flicek, Paul
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The Evolutionary Fates of a Large Segmental Duplication in Mouse
err2016-09-01
err17
errOAAI
errMorgan, Andrew P.; Holt, J. Matthew; McMullan, Rachel C.; Bell, Timothy A.; Clayshulte, Amelia M. -F.; Didion, John P.; Yadgary, Liran; Thybert, David; Odom, Duncan T.; Flicek, Paul; McMillan, Leonard; de Villena, Fernando Pardo-Manuel
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Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals
err2014-11-13
err44
errOAAI
errWong, Emily S.; Thybert, David; Schmitt, Bianca M.; Stefflova, Klara; Odom, Duncan T.; Flicek, Paul
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Random Monoallelic Gene Expression Increases upon Embryonic Stem Cell Differentiation
err2014-02-01
err110
errOAAI
errEckersley-Maslin, Melanie A.; Thybert, David; Bergmann, Jan H.; Marioni, John C.; Flicek, Paul; Spector, David L.
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Latent Regulatory Potential of Human-Specific Repetitive Elements
err2013-01-01
err55
errOAAI
errWard, Michelle C.; Wilson, Michael D.; Barbosa-Morais, Nuno L.; Schmidt, Dominic; Stark, Rory; Pan, Qun; Schwalie, Petra C.; Menon, Suraj; Lukk, Margus; Watt, Stephen; Thybert, David; Kutter, Claudia; Kirschner, Kristina; Flicek, Paul; Blencowe, Benjamin J.; Odom, Duncan T.
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Extensive compensatory cis-trans regulation in the evolution of mouse gene expression
err2012-08-23
err155
errOAAI
errGoncalves, Angela; Leigh-Brown, Sarah; Thybert, David; Stefflova, Klara; Turro, Ernest; Flicek, Paul; Brazma, Alvis; Odom, Duncan T.; Marioni, John C.
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SORGOdb: Superoxide Reductase Gene Ontology curated DataBase
err2011-01-01
err21
errOAAI
errLucchetti-Miganeh, Celine; Goudenege, David; Thybert, David; Salbert, Gilles; Barloy-Hubler, Frederique
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OxyGene: an innovative platform for investigating oxidative-response genes in whole prokaryotic genomes
err2008-12-31
err6
errOAAI
errThybert, David; Avner, Stephane; Lucchetti-Miganeh, Celine; Cheron, Angelique; Barloy-Hubler, Frederique
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