Jeffrey H. Chuang - Publications, H-index & Citations

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Jeffrey H. Chuang

The Jackson Laboratory

41H-index

411Paper Count

7.6KCitation Count

Published Papers 79

Publication Date

Publisher Correction: Interplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2026-07-03

PREAI

Minji Kim; Ping Wang; Patricia A. Clow; Eli Chien; Xiaotao Wang; Jianhao Peng; Haoxi Chai; Xiyuan Liu; Byoungkoo Lee; Chew Yee Ngan; Olgica Milenkovic; Jeffrey H. Chuang; Chia-Lin Wei; Rafael Casellas; Albert W. Cheng; Yijun Ruan

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Prediction of outcome from spatial Protein profiling of triple-negative breast cancers

Communications Medicine

IF6.3

2026-01-29

OAAI

Ali Foroughi pour; Te-Chia Wu; Javad Noorbakhsh; Jan Martinek; Santhosh Sivajothi; Paul Robson; Karolina Palucka; Jeffrey H. Chuang

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Interplay between cohesin and RNA polymerase II in regulating chromatin interactions and gene transcription

Nature Structural & Molecular Biology

IF10.1

2026-01-13

PREAI

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Advancing biological understanding of cellular senescence with computational multiomics

Nature Genetics

IF0

2025-09-15

PREAI

Sheng Li; Paula A. Agudelo Garcia; Constantin Aliferis; Michael J. Becich; Jazmin Calyeca; Benjamin D. Cosgrove; Jennifer Elisseeff; Negin Farzad; Elana J. Fertig; Carolyn Glass; Liangcai Gu; Qianjiang Hu; Zhicheng Ji; Melanie Königshoff; Nathan K. LeBrasseur; Dongmei Li; Anjun Ma; Qin Ma; Vilas Menon; Jacob T. Mitchell; Ana L. Mora; Sushma Nagaraj; Andrew C. Nelson; Laura J. Niedernhofer; Mauricio Rojas; Hash Brown Taha; Jinhua Wang; Siyuan Wang; Pei-Hsun Wu; Jichun Xie; Ming Xu; Miao Yu; Xu Zhang; Yue Zhao; Peter D. Adams; Cristina Aguayo-Mazzucato; Darren J. Baker; Christopher Benz; David A. Bernlohr; Marta Bueno; Jin Chen; Bennett G. Childs; Jeffrey H. Chuang; Dongjun Chung; Mythili Dileepan; Li Ding; Mingze Dong; Francesca Duncan; Archibald Enninful; William F. Flynn; Ana Catarina Franco; David Furman; Vesna Garovic; Stephanie Halene; Allison B. Herman; Ann V. Hertzel; Kanako Iwasaki; Hyeongseon Jeon; Jeon Woong Kang; Shilpita Karmakar; James L. Kirkland; Ron Korstanje; Erich Kummerfeld; Jun Hee Lee; Yang Liu; Yao Lu; Jose Lugo-Martinez; Helene Martini; Simon Melov; Nicolas Musi; João F. Passos; Samuel T. Peters; Irfan Rahman; Ramalakshmi Ramasamy; Alexandra N. Rindone; Paul D. Robbins; Paul Robson; Jhonny Rodriguez-Lopez; Lorena Rosas; Nadia Rosenthal; Marissa J. Schafer; Birgit Schilling; Elizabeth L. Schmidt; Kevin Schneider; Kaustav Sengupta; Jian Shu; Peter T. C. So; Li Sun; Tamar Tchkonia; Marcos G. Teneche; Natalia Vanegas; Julia Wang; Juan Xie; Shanshan Yin; Ke Zhang; Quan Zhu; Rong Fan

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The CD123 antibody-drug conjugate pivekimab sunirine exerts profound activity in preclinical models of pediatric acute lymphoblastic leukemia

HEMASPHERE

IF14.6

2025-01-17

OAAI

Watts, Ben; Smith, Christopher M.; Evans, Kathryn; Gifford, Andrew J.; Mohamed, Sara M. A.; Erickson, Stephen W.; Earley, Eric J.; Neuhauser, Steven; Stearns, Timothy M.; Philip, Vivek M.; Chuang, Jeffrey H.; Zweidler-McKay, Patrick A.; Lakshmikanthan, Sribalaji; Jocoy, Emily L.; Bult, Carol J.; Teicher, Beverly A.; Smith, Malcolm A.

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Emerging AI approaches for cancer spatial omics

GIGASCIENCE

IF3.9

2025-01-01

OAAI

Noorbakhsh, Javad; Foroughi Pour, Ali; Chuang, Jeffrey

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Lessons learned from 20 years of preclinical testing in pediatric cancers

PHARMACOLOGY & THERAPEUTICS

IF12.5

2024-12-01

PREAI

Smith, Malcolm A.; Houghton, Peter J.; Lock, Richard B.; Maris, John M.; Gorlick, Richard; Kurmasheva, Raushan T.; Li, Xiao-Nan; Teicher, Beverly A.; Chuang, Jeffrey H.; Cruz, Filemon S. Dela; Dyer, Michael A.; Kung, Andrew L.; Lloyd, Michael W.; Mosse, Yael P.; Stearns, Timothy M.; Stewart, Elizabeth A.; Bult, Carol J.; Erickson, Stephen W.

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Comprehensive single-cell aging atlas of healthy mammary tissues reveals shared epigenomic and transcriptomic signatures of aging and cancer

NATURE AGING

IF19.4

2024-11-25

OAAI

Angarola, Brittany L.; Sharma, Siddhartha; Katiyar, Neerja; Kang, Hyeon Gu; Nehar-Belaid, Djamel; Park, Sunghee; Gott, Rachel; Eryilmaz, Giray N.; Labarge, Mark A.; Palucka, Karolina; Chuang, Jeffrey H.; Korstanje, Ron; Ucar, Duygu; Anczukow, Olga

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The novel ATR inhibitor elimusertib is efficacious as monotherapy and in combination with radiation in pdox models of pediatric high-grade glioma

EUROPEAN JOURNAL OF CANCER

IF7.1

2024-10-01

PREAI

Palacios, M. Suarez; Du, Y.; Xiao, S.; Abdallah, A.; Zhai, X.; Ciolak, E.; Huang, Z.; Kalapurakal, J.; Wadhwani, N.; Lenzen, A.; Kwon, J. Y.; Neuhauser, S.; Stearns, T.; Chuang, J.; Jocoy, E. L.; Bult, C.; Teicher, B.; Smith, M. A.; Li, X. N.

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Computational immune synapse analysis reveals T-cell interactions in distinct tumor microenvironments

COMMUNICATIONS BIOLOGY

IF5.1

2024-09-28

OAAI

Wang, Victor G.; Liu, Zichao; Martinek, Jan; Pour, Ali Foroughi; Zhou, Jie; Boruchov, Hannah; Ray, Kelly; Palucka, Karolina; Chuang, Jeffrey H.

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Multicenter histology image integration and multiscale deep learning for pediatric sarcoma subtype classification

CANCER RESEARCH

IF16.6

2024-09-05

PREAI

Thiesen, Adam H.; Domanskyi, Sergii; Pour, Ali Foroughi; Sheridan, Todd B.; Neuhauser, Steven B.; Stetson, Alyssa; Dannheim, Katelyn; Cameron, Danielle B.; Ahn, Shawn; Wu, Hao; Christison-Lagay, Emily R.; Bult, Carol J.; Chuang, Jeffrey H.; Rubinstein, Jill C.

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A Pan-Cancer Patient-Derived Xenograft Histology Image Repository with Genomic and Pathologic Annotations Enables Deep Learning Analysis

CANCER RESEARCH

IF16.6

2024-07-02

OAAI

White, Brian S.; Woo, Xing Yi; Koc, Soner; Sheridan, Todd; Neuhauser, Steven B.; Wang, Shidan; Evrard, Yvonne A.; Chen, Li; Pour, Ali Foroughi; Landua, John D.; Mashl, R. Jay; Davies, Sherri R.; Fang, Bingliang; Rosa, Maria Gabriela; Evans, Kurt W.; Bailey, Matthew H.; Chen, Yeqing; Xiao, Min; Rubinstein, Jill C.; Sanderson, Brian J.; Lloyd, Michael W.; Domanskyi, Sergii; Dobrolecki, Lacey E.; Fujita, Maihi; Fujimoto, Junya; Xiao, Guanghua; Fields, Ryan C.; Mudd, Jacqueline L.; Xu, Xiaowei; Hollingshead, Melinda G.; Jiwani, Shahanawaz; Acevedo, Saul; Davis-Dusenbery, Brandi N.; Robinson, Peter N.; Moscow, Jeffrey A.; Doroshow, James H.; Mitsiades, Nicholas; Kaochar, Salma; Pan, Chong-xian; Carvajal-Carmona, Luis G.; Welm, Alana L.; Welm, Bryan E.; Govindan, Ramaswamy; Li, Shunqiang; Davies, Michael A.; Roth, Jack A.; Meric-Bernstam, Funda; Xie, Yang; Herlyn, Meenhard; Ding, Li; Lewis, Michael T.; Bult, Carol J.; Dean II, Dennis A.; Chuang, Jeffrey H.

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Nextflow pipeline for Visium and H&E data from patient-derived xenograft samples

CELL REPORTS METHODS

IF4.5

2024-05-01

OAAI

Domanskyi, Sergii; Srivastava, Anuj; Kaster, Jessica; Li, Haiyin; Herlyn, Meenhard; Rubinstein, Jill C.; Chuang, Jeffrey H.

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Assessment of Patient-Derived Xenograft Growth and Antitumor Activity: The NCI PDXNet Consensus Recommendations

MOLECULAR CANCER THERAPEUTICS

IF5.5

2024-04-19

OAAI

Meric-Bernstam, Funda; Lloyd, Michael W.; Koc, Soner; Evrard, Yvonne A.; McShane, Lisa M.; Lewis, Michael T.; Evans, Kurt W.; Li, Dali; Rubinstein, Lawrence; Welm, Alana; Dean II, Dennis A.; Srivastava, Anuj; Grover, Jeffrey W.; Ha, Min J.; Chen, Huiqin; Huang, Xuelin; Varadarajan, Kaushik; Wang, Jing; Roth, Jack A.; Welm, Bryan; Govinden, Ramaswamy; Ding, Li; Kaochar, Salma; Mitsiades, Nicholas; Carvajal-Carmona, Luis; Herylyn, Meenhard; Davies, Michael A.; Shapiro, Geoffrey I.; Fields, Ryan; Trevino, Jose G.; Harrell, Joshua C.; Doroshow, James H.; Chuang, Jeffrey H.; Moscow, Jeffrey A.

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Dissection of melanoma and cutaneous lymphoma spatial molecular architecture by multimodal single-cell and spatial transcriptomics with generative AI

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Liu, Zichao; Song, Xiaofei; He, Jiang; He, Justin; Balasi, Jodi; Chuang, Jeffrey H.; Chen, Pei-Ling

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The ROR1 antibody-drug conjugate, MK-2140, enhances the efficacy of established drugs in preclinical models of pediatric acute lymphoblastic leukemia

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Lock, Richard B.; Evans, Kathryn; Watts, Ben; Bowman, Edward P.; Neuhauser, Steven; Stearns, Timothy; Chuang, Jeffrey H.; Phillip, Vivek M.; Jessen, Katti A.; Jocoy, Emily L.; Bult, Carol J.; Teicher, Beverly A.; Smith, Malcolm A.

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Pediatric Preclinical In Vivo Testing (PIVOT) data portal enables access to 15 years of retrospective treatment study data in support of prospective study design

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Acevedo, Saul E.; Stearns, Tim M.; Webster, Phillip; Philip, Vivek; Lloyd, Michael W.; Srivastava, Anuj; Neuhauser, Steven; Begley, Dale; Krupke, Debbie; Jocoy, Emily L.; Bult, Carol J.; Chuang, Jeffrey H.; Dean, Dennis A.

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Unveiling the spatial landscape of tumor and stroma heterogeneity in colorectal cancer with spatial transcriptomics

CANCER RESEARCH

IF16.6

2024-03-22

PREAI

Zhou, Jie; Sheridan, Todd B.; Domanskyi, Sergii; Cowles, Stephanie L.; Park, Sunghee; Putra, Ilham; Anczukow, Olga; Chuang, Jeffrey H.; Rubinstein, Jill C.

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Longitudinal histology and spatial transcriptomics profiling in targeted treatment of melanoma patient-derived models interrogates persister and resistant cell populations

CANCER RESEARCH

IF16.6

2024-02-01

PREAI

Domanskyi, Sergii; Sheridan, Todd B.; Sanderson, Brian J.; Park, SungHee; Kaster, Jessica; Li, Haiyin; Anczukow, Olga; Herlyn, Meenhard; Chuang, Jeffrey H.; Rubinstein, Jill C.

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Cellos: High-throughput deconvolution of 3D organoid dynamics at cellular resolution for cancer pharmacology

CANCER RESEARCH

IF16.6

2024-02-01

PREAI

Mukashyaka, Patience; Kumar, Pooja; Mellert, David J.; Nicholas, Shadae; Noorbakhsh, Javad; Brugiolo, Mattia; Anczukow, Olga; Liu, Edison T.; Chuang, Jeffrey H.

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Research Directions