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Jody Clements

howard hughes medical institute janelia research campus, , ashburn, va 20147,

35H-index
75Paper Count
3.0WCitation Count
Published Papers 23
Publication Date
PEELing: an integrated and user-centric platform for spatially-resolved proteomics data analysis
err2025-08-06
err0
errOAAI
errXi Peng; Jody Clements; Zuzhi Jiang; Shuo Han; Stephan Preibisch; Jiefu Li
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Connectome-driven neural inventory of a complete visual system
errNATURE
IF48.5
err2025-03-26
err1
errOAAI
errNern, Aljoscha; Loesche, Frank; Takemura, Shin-ya; Burnett, Laura E.; Dreher, Marisa; Gruntman, Eyal; Hoeller, Judith; Huang, Gary B.; Januszewski, Michal; Klapoetke, Nathan C.; Koskela, Sanna; Longden, Kit D.; Lu, Zhiyuan; Preibisch, Stephan; Qiu, Wei; Rogers, Edward M.; Seenivasan, Pavithraa; Zhao, Arthur; Bogovic, John; Canino, Brandon S.; Clements, Jody; Cook, Michael; Finley-May, Samantha; Flynn, Miriam A.; Hameed, Imran; Fragniere, Alexandra M. C.; Hayworth, Kenneth J.; Hopkins, Gary Patrick; Hubbard, Philip M.; Katz, William T.; Kovalyak, Julie; Lauchie, Shirley A.; Leonard, Meghan; Lohff, Alanna; Maldonado, Charli A.; Mooney, Caroline; Okeoma, Nneoma; Olbris, Donald J.; Ordish, Christopher; Paterson, Tyler; Phillips, Emily M.; Pietzsch, Tobias; Salinas, Jennifer Rivas; Rivlin, Patricia K.; Schlegel, Philipp; Scott, Ashley L.; Scuderi, Louis A.; Takemura, Satoko; Talebi, Iris; Thomson, Alexander; Trautman, Eric T.; Umayam, Lowell; Walsh, Claire; Walsh, John J.; Xu, C. Shan; Yakal, Emily A.; Yang, Tansy; Zhao, Ting; Funke, Jan; George, Reed; Hess, Harald F.; Jefferis, Gregory S. X. E.; Knecht, Christopher; Plaza, Stephen M.; Romani, Sandro; Saalfeld, Stephan; Scheffer, Louis K.; Berg, Stuart; Rubin, Gerald M.; Reiser, Michael B.
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The cell-type-specific spatial organization of the anterior thalamic nuclei of the mouse brain
err2024-03-01
err0
errOAAI
errKapustina, Margarita; Zhang, Angela A.; Tsai, Jennifer Y. J.; Bristow, Brianna N.; Kraus, Larissa; Sullivan, Kaitlin E.; Erwin, Sarah R.; Wang, Lihua; Stach, Tara R.; Clements, Jody; Lemire, Andrew L.; Cembrowski, Mark S.
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Sharp cell-type-identity changes differentiate the retrosplenial cortex from the neocortex
err2023-03-01
err3
errOAAI
errSullivan, Kaitlin E.; Kraus, Larissa; Kapustina, Margarita; Wang, Lihua; Stach, Tara R.; Lemire, Andrew L.; Clements, Jody; Cembrowski, Mark S.
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A searchable image resource of Drosophila GAL4 driver expression patterns with single neuron resolution
err2023-02-23
err25
errOAAI
errMeissner, Geoffrey W.; Nern, Aljoscha; Dorman, Zachary; DePasquale, Gina M.; Forster, Kaitlyn; Gibney, Theresa; Hausenfluck, Joanna H.; He, Yisheng; Iyer, Nirmala A.; Jeter, Jennifer; Johnson, Lauren; Johnston, Rebecca M.; Lee, Kelley; Melton, Brian; Yarbrough, Brianna; Zugates, Christopher T.; Clements, Jody; Goina, Cristian; Otsuna, Hideo; Rokicki, Konrad; Svirskas, Robert R.; Aso, Yoshinori; Card, Gwyneth M.; Dickson, Barry J.; Ehrhardt, Erica; Goldammer, Jens; Ito, Masayoshi; Kainmueller, Dagmar; Korff, Wyatt; Mais, Lisa; Minegishi, Ryo; Namiki, Shigehiro; Rubin, Gerald M.; Sterne, Gabriella R.; Wolff, Tanya; Malkesman, Oz; FlyLight Project Team
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Spatially patterned excitatory neuron subtypes and projections of the claustrum
err2021-08-16
err20
errOAAI
errErwin, Sarah R.; Bristow, Brianna N.; Sullivan, Kaitlin E.; Kendrick, Rennie M.; Marriott, Brian; Wang, Lihua; Clements, Jody; Lemire, Andrew L.; Jackson, Jesse; Cembrowski, Mark S.
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A connectome and analysis of the adult Drosophila central brain
err2020-09-07
err428
errOAAI
errScheffer, Louis K.; Xu, C. Shan; Januszewski, Michal; Lu, Zhiyuan; Takemura, Shin-ya; Hayworth, Kenneth J.; Huang, Gary B.; Shinomiya, Kazunori; Maitlin-Shepard, Jeremy; Berg, Stuart; Clements, Jody; Hubbard, Philip M.; Katz, William T.; Umayam, Lowell; Zhao, Ting; Ackerman, David; Blakely, Tim; Bogovic, John; Dolafi, Tom; Kainmueller, Dagmar; Kawase, Takashi; Khairy, Khaled A.; Leavitt, Laramie; Li, Peter H.; Lindsey, Larry; Neubarth, Nicole; Olbris, Donald J.; Otsuna, Hideo; Trautman, Eric T.; Ito, Masayoshi; Bates, Alexander S.; Goldammer, Jens; Wolff, Tanya; Svirskas, Robert; Schlegel, Philipp; Neace, Erika; Knecht, Christopher J.; Alvarado, Chelsea X.; Bailey, Dennis A.; Ballinger, Samantha; Borycz, Jolanta A.; Canino, Brandon S.; Cheatham, Natasha; Cook, Michael; Dreher, Marisa; Duclos, Octave; Eubanks, Bryon; Fairbanks, Kelli; Finley, Samantha; Forknall, Nora; Francis, Audrey; Hopkins, Gary Patrick; Joyce, Emily M.; Kim, SungJin; Kirk, Nicole A.; Kovalyak, Julie; Lauchie, Shirley A.; Lohff, Alanna; Maldonado, Charli; Manley, Emily A.; McLin, Sari; Mooney, Caroline; Ndama, Miatta; Ogundeyi, Omotara; Okeoma, Nneoma; Ordish, Christopher; Padilla, Nicholas; Patrick, Christopher M.; Paterson, Tyler; Phillips, Elliott E.; Phillips, Emily M.; Rampally, Neha; Ribeiro, Caitlin; Robertson, Madelaine K.; Rymer, Jon Thomson; Ryan, Sean M.; Sammons, Megan; Scott, Anne K.; Scott, Ashley L.; Shinomiya, Aya; Smith, Claire; Smith, Kelsey; Smith, Natalie L.; Sobeski, Margaret A.; Suleiman, Alia; Swift, Jackie; Takemura, Satoko; Talebi, Iris; Tarnogorska, Dorota; Tenshaw, Emily; Tokhi, Temour; Walsh, John J.; Yang, Tansy; Horne, Jane Anne; Li, Feng; Parekh, Ruchi; Rivlin, Patricia K.; Jayaraman, Vivek; Costa, Marta; Jefferis, Gregory S. X. E.; Ito, Kei; Saalfeld, Stephan; George, Reed; Meinertzhagen, Ian A.; Rubin, Gerald M.; Hess, Harald F.; Jain, Viren; Plaza, Stephen M.
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Extensive and spatially variable within-cell-type heterogeneity across the basolateral amygdala
err2020-09-01
err49
errOAAI
errO'Leary, Timothy P.; Sullivan, Kaitlin E.; Wang, Lihua; Clements, Jody; Lemire, Andrew L.; Cembrowski, Mark S.
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The subiculum is a patchwork of discrete subregions
err2018-10-30
err65
errOAAI
errCembrowski, Mark S.; Wang, Lihua; Lemire, Andrew L.; Copeland, Monique; DiLisio, Salvatore F.; Clements, Jody; Spruston, Nelson
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The Dfam database of repetitive DNA families
err2015-11-26
err467
errOAAI
errHubley, Robert; Finn, Robert D.; Clements, Jody; Eddy, Sean R.; Jones, Thomas A.; Bao, Weidong; Smit, Arian F. A.; Wheelers, Travis J.
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HMMER web server: 2015 update
err2015-05-05
err758
errOAAI
errFinn, Robert D.; Clements, Jody; Arndt, William; Miller, Benjamin L.; Wheeler, Travis J.; Schreiber, Fabian; Bateman, Alex; Eddy, Sean R.
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iPfam: a database of protein family and domain interactions found in the Protein Data Bank
err2013-12-01
err152
errOAAI
errFinn, Robert D.; Miller, Benjamin L.; Clements, Jody; Bateman, Alex
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Pfam: the protein families database
err2013-11-27
err4.1K
errOAAI
errFinn, Robert D.; Bateman, Alex; Clements, Jody; Coggill, Penelope; Eberhardt, Ruth Y.; Eddy, Sean R.; Heger, Andreas; Hetherington, Kirstie; Holm, Liisa; Mistry, Jaina; Sonnhammer, Erik L. L.; Tate, John; Punta, Marco
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Dfam: a database of repetitive DNA based on profile hidden Markov models
err2012-11-30
err235
errOAAI
errWheeler, Travis J.; Clements, Jody; Eddy, Sean R.; Hubley, Robert; Jones, Thomas A.; Jurka, Jerzy; Smit, Arian F. A.; Finn, Robert D.
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The Pfam protein families database
err2011-11-29
err199
errOAAI
errPunta, Marco; Coggill, Penny C.; Eberhardt, Ruth Y.; Mistry, Jaina; Tate, John; Boursnell, Chris; Pang, Ningze; Forslund, Kristoffer; Ceric, Goran; Clements, Jody; Heger, Andreas; Holm, Liisa; Sonnhammer, Erik L. L.; Eddy, Sean R.; Bateman, Alex; Finn, Robert D.
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HMMER web server: interactive sequence similarity searching
err2011-05-18
err4.3K
errOAAI
errFinn, Robert D.; Clements, Jody; Eddy, Sean R.
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Mutation analysis of 24 known cancer genes in the NCI-60 cell line set
err2006-11-22
err422
errOAAI
errIkediobi, Ogechi N.; Davies, Helen; Bignell, Graham; Edkins, Sarah; Stevens, Claire; O'Meara, Sarah; Santarius, Thomas; Avis, Tim; Barthorpe, Syd; Brackenbury, Lisa; Buck, Gemma; Butler, Adam; Clements, Jody; Cole, Jennifer; Dicks, Ed; Forbes, Simon; Gray, Kristian; Halliday, Kelly; Harrison, Rachel; Hills, Katy; Hinton, Jonathan; Hunter, Chris; Jenkinson, Andy; Jones, David; Kosmidou, Vivienne; Lugg, Richard; Menzies, Andrew; Mironenko, Tatiana; Parker, Adrian; Perry, Janet; Raine, Keiran; Richardson, David; Shepherd, Rebecca; Small, Alex; Smith, Raffaella; Solomon, Helen; Stephens, Philip; Teague, Jon; Tofts, Calli; Varian, Jennifer; Webb, Tony; West, Sofie; Widaa, Sara; Yates, Andy; Reinhold, William; Weinstein, John N.; Stratton, Michael R.; Futreal, P. Andrew; Wooster, Richard
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A hypermutation phenotype and somatic MSH6 mutations in recurrent human malignant gliomas after alkylator chemotherapy
err2006-04-17
err399
errOAAI
errHunter, C; Smith, R; Cahill, DP; Stephens, P; Stevens, C; Teague, J; Greenman, C; Edkins, S; Bignell, G; Davies, H; O'Meara, S; Parker, A; Avis, T; Barthorpe, S; Brackenbury, L; Buck, G; Butler, A; Clements, J; Cole, J; Dicks, E; Forbes, S; Gorton, M; Gray, K; Halliday, K; Harrison, R; Hills, K; Hinton, J; Jenkinson, A; Jones, D; Kosmidou, V; Laman, R; Lugg, R; Menzies, A; Perry, J; Petty, R; Raine, K; Richardson, D; Shepherd, R; Small, A; Solomon, H; Tofts, C; Varian, J; West, S; Widaa, S; Yates, A; Easton, DF; Riggins, G; Roy, JE; Levine, KK; Mueller, W; Batchelor, TT; Louis, DN; Stratton, MR; Futreal, PA; Wooster, R
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COSMIC 2005
err2006-01-17
err374
errOAAI
errForbes, S; Clements, J; Dawson, E; Bamford, S; Webb, T; Dogan, A; Flanagan, A; Teague, J; Wooster, R; Futreal, PA; Stratton, MR
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