Not logged in Oropharyngeal microbiome dysbiosis in esophageal squamous cell carcinoma: taxonomic shifts, metabolic reprogramming, and geographic disparities in a high-incidence cohort Liu, Ying; Wu, Erman; Cheng, Fang; Zhang, Meng; Rou, Qian; Nuertai, Zinati; Xu, Maorong; Xu, Shanshan; Li, Minghui; Zhang, Lei; Nasiroula, Aheli Share Save
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Transcription and DNA replication collisions lead to large tandem duplications and expose targetable therapeutic vulnerabilities in cancer Yang, Yang; Badura, Michelle L.; O'Leary, Patrick C.; Delavan, Henry M.; Robinson, Troy M.; Egusa, Emily A.; Zhong, Xiaoming; Swinderman, Jason T.; Li, Haolong; Zhang, Meng; Kim, Minkyu; Ashworth, Alan; Feng, Felix Y.; Chou, Jonathan; Yang, Lixing Share Save
Synthetic Lethal Targeting of CDK12-Deficient Prostate Cancer with PARP Inhibitors Chou, Jonathan; Robinson, Troy M.; Egusa, Emily A.; Lodha, Roshan; Zhang, Meng; Badura, Michelle; Mikayelyan, Mane; Delavan, Henry M.; Swinderman, Jason; Wilson, Chris; Zhu, Jun; Das, Rajdeep; Nguyen, Minh; Loehr, Andrea; Golsorkhi, Tony; Simmons, Andrew; Abida, Wassim; Chinnaiyan, Arul M.; Arkin, Michelle R.; Small, Eric J.; Quigley, David A.; Yang, Lixing; Kim, Minkyu; Ashworth, Alan; Feng, Felix Y. Share Save
Genomic and transcriptomic features of androgen receptor signaling inhibitor resistance in metastatic castration-resistant prostate cancer Zhu, Xiaolin; Farsh, Tatyanah; Vis, Daniel; Yu, Ivan; Li, Haolong; Liu, Tianyi; Sjostrom, Martin; Shrestha, Raunak; Kneppers, Jeroen; Severson, Tesa; Zhang, Meng; Lundberg, Arian; Rodriguez, Thaidy Moreno; Weinstein, Alana S.; Foye, Adam; Mehra, Niven; Aggarwal, Rahul R.; Bergman, Andries M.; Small, Eric J.; Lack, Nathan A.; Zwart, Wilbert; Quigley, David A.; van der Heijden, Michiel S.; Feng, Felix Y. Share Save
Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer Zhao, Shuang G.; Bootsma, Matthew; Zhou, Stanley; Shrestha, Raunak; Moreno-Rodriguez, Thaidy; Lundberg, Arian; Pan, Chu; Arlidge, Christopher; Hawley, James R.; Foye, Adam; Weinstein, Alana S.; Sjostrom, Martin; Zhang, Meng; Li, Haolong; Chesner, Lisa N.; Rydzewski, Nicholas R.; Helzer, Kyle T.; Shi, Yue; Bailey, Adina M.; Zhang, Li; Beer, Tomasz M.; Thomas, George; Chi, Kim N.; Gleave, Martin; Zoubeidi, Amina; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen; Bose, Rohit; Huang, Franklin W.; Fong, Larry; Lara, Primo N.; Evans, Christopher P.; Huang, Jiaoti; Lynch, Molly; Dehm, Scott M.; Lang, Joshua M.; Alumkal, Joshi J.; He, Hansen H.; Wyatt, Alexander W.; Aggarwal, Rahul; Zwart, Wilbert; Small, Eric J.; Quigley, David A.; Lupien, Mathieu; Feng, Felix Y. Share Save
An Atlas of Accessible Chromatin in Advanced Prostate Cancer Reveals the Epigenetic Evolution during Tumor Progression Shrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjoestroem, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y. Share Save
Integrative analysis of ultra-deep RNA-seq reveals alternative promoter usage as a mechanism of activating oncogenic programmes during prostate cancer progression Zhang, Meng; Sjostrom, Martin; Cui, Xiekui; Foye, Adam; Farh, Kyle; Shrestha, Raunak; Lundberg, Arian; Dang, Ha X.; Li, Haolong; Febbo, Phillip G.; Aggarwal, Rahul; Alumkal, Joshi J.; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David A. Share Save
An atlas of accessible chromatin in advanced prostate cancer Shrestha, Raunak; Chesner, Lisa N.; Zhang, Meng; Zhou, Stanley; Foye, Adam; Lundberg, Arian; Weinstein, Alana S.; Sjostrom, Martin; Zhu, Xiaolin; Moreno-Rodriguez, Thaidy; Li, Haolong; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Lupien, Mathieu; Quigley, David A.; Feng, Felix Y. Share Save
The Genomic and Epigenomic Landscape of Double-Negative Metastatic Prostate Cancer Lundberg, Arian; Zhang, Meng; Aggarwal, Rahul; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Rob E.; Retting, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A. Share Save
Convergent evolution in DNA repair-deficient mCRPC in response to targeted therapy Moreno, Thaidy; Zhang, Meng; Lundberg, Arian; Shrestha, Raunak; Sjostrom, Martin; Pasam, Anu; Foye, Adam; Trigos, Anna; Feng, Felix; Sandhu, Shahneen; Quigley, David A. Share Save
Genomic and epigenomic drivers of double-negative metastatic prostate cancer Lundberg, Arian; Zhang, Meng; Aggarwal, Rahul R.; Li, Haolong; Zhang, Li; Foye, Adam; Sjostrom, Martin; Chou, Jonathan; Chang, Kevin; Moreno-Rodriguez, Thaidy; Shrestha, Raunak; Baskin, Avi; Zhu, Xiaolin; Weinstein, Alana S.; Younger, Noah; Alumkal, Joshi J.; Beer, Tomasz M.; Chi, Kim N.; Evans, Christopher P.; Gleave, Martin; Lara, Primo N.; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Wyatt, Alexander W.; Feng, Felix Y.; Small, Eric J.; Quigley, David A. Share Save
Alternative promoter usage is linked to transcriptional and epigenetic alterations during prostate cancer progression Zhang, Meng; Sjostrom, Martin; Shrestha, Raunak; Lundberg, Arian; Moreno-Rodriguez, Thaidy; Foye, Adam; Dang, Ha X.; Alumkal, Joshi J.; Aggarwal, Rahul; Small, Eric J.; Maher, Christopher A.; Feng, Felix Y.; Quigley, David Share Save
Whole genome and transcriptome analysis of paired metastatic biopsies identified resistance mechanisms in castration-resistant prostate cancer Zhu, Xiaolin; Vis, Daniel; Sjostrom, Martin; Shrestha, Raunak; Kneppers, Jeroen; Severson, Tesa; Zhu, Yanyun; Zhang, Meng; Lundberg, Arian; Rodriguez, Thaidy Moreno; Weinstein, Alana; Li, Haolong; Foye, Adam; Aggarwal, Rahul; Bergman, Andries M.; Small, Eric; Zwart, Wilbert; Quigley, David; van der Heijden, Michiel; Feng, Felix Share Save
Intrinsic Molecular Subtypes of Metastatic Castration-Resistant Prostate Cancer Feng, Eric; Rydzewski, Nicholas R.; Zhang, Meng; Lundberg, Arian; Bootsma, Matthew; Helzer, Kyle T.; Lang, Joshua M.; Aggarwal, Rahul; Small, Eric J.; Quigley, David A.; Sjostrom, Martin; Zhao, Shuang G. Share Save
The 5-Hydroxymethylcytosine Landscape of Prostate Cancer Sjostrom, Martin; Zhao, Shuang G.; Levy, Samuel; Zhang, Meng; Ning, Yuhong; Shrestha, Raunak; Lundberg, Arian; Herberts, Cameron; Foye, Adam; Aggarwal, Rahul; Hua, Junjie T.; Li, Haolong; Bergamaschi, Anna; Maurice-Dror, Corinne; Maheshwari, Ashutosh; Chen, Sujun; Ng, Sarah W. S.; Ye, Wenbin; Petricca, Jessica; Fraser, Michael; Chesner, Lisa; Perry, Marc D.; Moreno-Rodriguez, Thaidy; Chen, William S.; Alumkal, Joshi J.; Chou, Jonathan; Morgans, Alicia K.; Beer, Tomasz M.; Thomas, George, V; Gleave, Martin; Lloyd, Paul; Phillips, Tierney; McCarthy, Erin; Haffner, Michael C.; Zoubeidi, Amina; Annala, Matti; Reiter, Robert E.; Rettig, Matthew B.; Witte, Owen N.; Fong, Lawrence; Bose, Rohit; Huang, Franklin W.; Luo, Jianhua; Bjartell, Anders; Lang, Joshua M.; Mahajan, Nupam P.; Lara, Primo N.; Evans, Christopher P.; Tran, Phuoc T.; Posadas, Edwin M.; He, Chuan; Cui, Xiao-Long; Huang, Jiaoti; Zwart, Wilbert; Gilbert, Luke A.; Maher, Christopher A.; Boutros, Paul C.; Chi, Kim N.; Ashworth, Alan; Small, Eric J.; He, Housheng H.; Wyatt, Alexander W.; Quigley, David A.; Feng, Felix Y. Share Save
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Reduction of neuroinflammation alleviated mouse post bone fracture and stroke memory dysfunction Huo, Kang; Wei, Meng; Zhang, Meng; Wang, Zhanqiang; Pan, Peipei; Shaligram, Sonali S.; Huang, Jinhao; Do Prado, Leandro B.; Wong, Julia; Su, Hua Share Save
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