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M
Matthieu Muffato
wellcome trust sanger institute
36H-index
72Paper Count
2.6WCitation Count
Published Papers 30
Publication Date
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- Impact Factor
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Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences.png)
2024-01-12
18
OAAI
Yu, Daqi; Ren, Yandong; Uesaka, Masahiro; Beavan, Alan J. S.; Muffato, Matthieu; Shen, Jieyu; Li, Yongxin; Sato, Iori; Wan, Wenting; Clark, James W.; Keating, Joseph N.; Carlisle, Emily M.; Dearden, Richard P.; Giles, Sam; Randle, Emma; Sansom, Robert S.; Feuda, Roberto; Fleming, James F.; Sugahara, Fumiaki; Cummins, Carla; Patricio, Mateus; Akanni, Wasiu; D'Aniello, Salvatore; Bertolucci, Cristiano; Irie, Naoki; Alev, Cantas; Sheng, Guojun; de Mendoza, Alex; Maeso, Ignacio; Irimia, Manuel; Fromm, Bastian; Peterson, Kevin J.; Das, Sabyasachi; Hirano, Masayuki; Rast, Jonathan P.; Cooper, Max D.; Paps, Jordi; Pisani, Davide; Kuratani, Shigeru; Martin, Fergal J.; Wang, Wen; Donoghue, Philip C. J.; Zhang, Yong E.; Pascual-Anaya, Juan
2024-01-1218OAAIYu, Daqi; Ren, Yandong; Uesaka, Masahiro; Beavan, Alan J. S.; Muffato, Matthieu; Shen, Jieyu; Li, Yongxin; Sato, Iori; Wan, Wenting; Clark, James W.; Keating, Joseph N.; Carlisle, Emily M.; Dearden, Richard P.; Giles, Sam; Randle, Emma; Sansom, Robert S.; Feuda, Roberto; Fleming, James F.; Sugahara, Fumiaki; Cummins, Carla; Patricio, Mateus; Akanni, Wasiu; D'Aniello, Salvatore; Bertolucci, Cristiano; Irie, Naoki; Alev, Cantas; Sheng, Guojun; de Mendoza, Alex; Maeso, Ignacio; Irimia, Manuel; Fromm, Bastian; Peterson, Kevin J.; Das, Sabyasachi; Hirano, Masayuki; Rast, Jonathan P.; Cooper, Max D.; Paps, Jordi; Pisani, Davide; Kuratani, Shigeru; Martin, Fergal J.; Wang, Wen; Donoghue, Philip C. J.; Zhang, Yong E.; Pascual-Anaya, Juan.png){kind=icon}
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SaveReconstruction of hundreds of reference ancestral genomes across the eukaryotic kingdom2023-01-1620OAAIMuffato, Matthieu; Louis, Alexandra; Nguyen, Nga Thi Thuy; Lucas, Joseph; Berthelot, Camille; Crollius, Hugues Roest
2023-01-1620OAAIMuffato, Matthieu; Louis, Alexandra; Nguyen, Nga Thi Thuy; Lucas, Joseph; Berthelot, Camille; Crollius, Hugues RoestShareSaveEnsembl 2022.png)
NUCLEIC ACIDS RESEARCH2021-11-171.1KOAAICunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2021-11-171.1KOAAICunningham, Fiona; Allen, James E.; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barnes, If; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bignell, Alexandra; Billis, Konstantinos; Boddu, Sanjay; Brooks, Lucy; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Da Rin; Davidson, Claire; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Martinez, Jose Gonzalez; Guijarro-Clarke, Cristina; Gymer, Arthur; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Marugan, Jose Carlos; Mohanan, Shamika; Mushtaq, Aleena; Naven, Marc; Ogeh, Denye N.; Parker, Anne; Parton, Andrew; Perry, Malcolm; Pilizota, Ivana; Prosovetskaia, Irina; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Perez-Silva, Jose G.; Stark, William; Steed, Emily; Sutinen, Kyosti; Sukumaran, Ranjit; Sumathipala, Dulika; Suner, Marie-Marthe; Szpak, Michal; Thormann, Anja; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Walts, Brandon; Willhoft, Natalie; Winterbottom, Andrea; Wass, Elizabeth; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Giorgetti, Stefano; Haggerty, Leanne; Hunt, Sarah E.; IIsley, Garth R.; Loveland, Jane E.; Martin, Fergal J.; Moore, Benjamin; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Dyer, Sarah; Harrison, Peter W.; Howe, Kevin L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, PaulShareSaveEnsembl Genomes 2022: an expanding genome resource for non-vertebratesNUCLEIC ACIDS RESEARCH2021-11-13167OAAIYates, Andrew D.; Allen, James; Amode, Ridwan M.; Azov, Andrey G.; Barba, Matthieu; Becerra, Andres; Bhai, Jyothish; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Chakiachvili, Marc; Chougule, Kapeel; Christensen, Mikkel; Contreras-Moreira, Bruno; Cuzick, Alayne; Fioretto, Luca Da Rin; Davis, Paul; De Silva, Nishadi H.; Diamantakis, Stavros; Dyer, Sarah; Elser, Justin; Filippi, Carla, V; Gall, Astrid; Grigoriadis, Dionysios; Guijarro-Clarke, Cristina; Gupta, Parul; Hammond-Kosack, Kim E.; Howe, Kevin L.; Jaiswal, Pankaj; Kaikala, Vinay; Kumar, Vivek; Kumari, Sunita; Langridge, Nick; Le, Tuan; Luypaert, Manuel; Maslen, Gareth L.; Maurel, Thomas; Moore, Benjamin; Muffato, Matthieu; Mushtaq, Aleena; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Parker, Anne; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Quinton-Tulloch, Mark; Rodgers, Faye; Rosello, Marc; Ruffier, Magali; Seager, James; Sitnik, Vasily; Szpak, Michal; Tate, John; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Ware, Doreen; Wei, Sharon; Williams, Gary; Winterbottom, Andrea; Zarowiecki, Magdalena; Finn, Robert D.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2021-11-13167OAAIYates, Andrew D.; Allen, James; Amode, Ridwan M.; Azov, Andrey G.; Barba, Matthieu; Becerra, Andres; Bhai, Jyothish; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Chakiachvili, Marc; Chougule, Kapeel; Christensen, Mikkel; Contreras-Moreira, Bruno; Cuzick, Alayne; Fioretto, Luca Da Rin; Davis, Paul; De Silva, Nishadi H.; Diamantakis, Stavros; Dyer, Sarah; Elser, Justin; Filippi, Carla, V; Gall, Astrid; Grigoriadis, Dionysios; Guijarro-Clarke, Cristina; Gupta, Parul; Hammond-Kosack, Kim E.; Howe, Kevin L.; Jaiswal, Pankaj; Kaikala, Vinay; Kumar, Vivek; Kumari, Sunita; Langridge, Nick; Le, Tuan; Luypaert, Manuel; Maslen, Gareth L.; Maurel, Thomas; Moore, Benjamin; Muffato, Matthieu; Mushtaq, Aleena; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Parker, Anne; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Quinton-Tulloch, Mark; Rodgers, Faye; Rosello, Marc; Ruffier, Magali; Seager, James; Sitnik, Vasily; Szpak, Michal; Tate, John; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Ware, Doreen; Wei, Sharon; Williams, Gary; Winterbottom, Andrea; Zarowiecki, Magdalena; Finn, Robert D.; Flicek, PaulShareSaveEnsembl 2021NUCLEIC ACIDS RESEARCH2020-11-021.1KOAAIHowe, Kevin L.; Achuthan, Premanand; Allen, James; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Azov, Andrey G.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Rin; Davidson, Claire; Dodiya, Kamalkumar; El Houdaigui, Bilal; Fatima, Reham; Gall, Astrid; Giron, Carlos Garcia; Grego, Tiago; Guijarro-Clarke, Cristina; Haggerty, Leanne; Hemrom, Anmol; Hourlier, Thibaut; Izuogu, Osagie G.; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Martinez, Jose Gonzalez; Marugan, Jose Carlos; Maurel, Thomas; McMahon, Aoife C.; Mohanan, Shamika; Moore, Benjamin; Muffato, Matthieu; Oheh, Denye N.; Paraschas, Dimitrios; Parker, Anne; Parton, Andrew; Prosovetskaia, Irina; Sakthivel, Manoj P.; Salam, Ahamed I. Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, N.; Steed, Emily; Szpak, Michal; Szuba, Marek; Taylor, Kieron; Thormann, Anja; Threadgold, Glen; Walts, Brandon; Winterbottom, Andrea; Chakiachvili, Marc; Chaubal, Ameya; De Silva, Nishadi; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; IIsley, Garth R.; Langridge, Nick; Loveland, Jane E.; Martin, Fergal J.; Mudge, Jonathan M.; Morales, Joanella; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2020-11-021.1KOAAIHowe, Kevin L.; Achuthan, Premanand; Allen, James; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Azov, Andrey G.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Charkhchi, Mehrnaz; Cummins, Carla; Fioretto, Luca Rin; Davidson, Claire; Dodiya, Kamalkumar; El Houdaigui, Bilal; Fatima, Reham; Gall, Astrid; Giron, Carlos Garcia; Grego, Tiago; Guijarro-Clarke, Cristina; Haggerty, Leanne; Hemrom, Anmol; Hourlier, Thibaut; Izuogu, Osagie G.; Juettemann, Thomas; Kaikala, Vinay; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Martinez, Jose Gonzalez; Marugan, Jose Carlos; Maurel, Thomas; McMahon, Aoife C.; Mohanan, Shamika; Moore, Benjamin; Muffato, Matthieu; Oheh, Denye N.; Paraschas, Dimitrios; Parker, Anne; Parton, Andrew; Prosovetskaia, Irina; Sakthivel, Manoj P.; Salam, Ahamed I. Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, N.; Steed, Emily; Szpak, Michal; Szuba, Marek; Taylor, Kieron; Thormann, Anja; Threadgold, Glen; Walts, Brandon; Winterbottom, Andrea; Chakiachvili, Marc; Chaubal, Ameya; De Silva, Nishadi; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; IIsley, Garth R.; Langridge, Nick; Loveland, Jane E.; Martin, Fergal J.; Mudge, Jonathan M.; Morales, Joanella; Perry, Emily; Ruffier, Magali; Tate, John; Thybert, David; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, PaulShareSaveThe Quest for Orthologs benchmark service and consensus calls in 2020NUCLEIC ACIDS RESEARCH2020-05-0621OAAIAltenhoff, Adrian M.; Garrayo-Ventas, Javier; Cosentino, Salvatore; Emms, David; Glover, Natasha M.; Hernandez-Plaza, Ana; Nevers, Yannis; Sundesha, Vicky; Szklarczyk, Damian; Fernandez, Jose M.; Codo, Laia; Li Gelpi, Josep; Huerta-Cepas, Jaime; Iwasaki, Wataru; Kelly, Steven; Lecompte, Odile; Muffato, Matthieu; Martin, Maria J.; Capella-Gutierrez, Salvador; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe
NUCLEIC ACIDS RESEARCHIF13.1
2020-05-0621OAAIAltenhoff, Adrian M.; Garrayo-Ventas, Javier; Cosentino, Salvatore; Emms, David; Glover, Natasha M.; Hernandez-Plaza, Ana; Nevers, Yannis; Sundesha, Vicky; Szklarczyk, Damian; Fernandez, Jose M.; Codo, Laia; Li Gelpi, Josep; Huerta-Cepas, Jaime; Iwasaki, Wataru; Kelly, Steven; Lecompte, Odile; Muffato, Matthieu; Martin, Maria J.; Capella-Gutierrez, Salvador; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, ChristopheShareSaveEnsembl 2020NUCLEIC ACIDS RESEARCH2019-11-061.2KOAAIYates, Andrew D.; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Azov, Andrey G.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Marugan, Jose Carlos; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar; Fatima, Reham; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Martinez, Jose Gonzalez; Maurel, Thomas; McDowall, Mark; McMahon, Aoife; Mohanan, Shamika; Moore, Benjamin; Nuhn, Michael; Oheh, Denye N.; Parker, Anne; Parton, Andrew; Patricio, Mateus; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sycheva, Mira; Szuba, Marek; Taylor, Kieron; Thormann, Anja; Threadgold, Glen; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Ilsley, Garth; Kostadima, Myrto; Langridge, Nick; Loveland, Jane E.; Martin, Fergal J.; Morales, Joannella; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Trevanion, Stephen J.; Cunningham, Fiona; Howe, Kevin L.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2019-11-061.2KOAAIYates, Andrew D.; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Allen, Jamie; Alvarez-Jarreta, Jorge; Amode, M. Ridwan; Armean, Irina M.; Azov, Andrey G.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Marugan, Jose Carlos; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar; Fatima, Reham; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Lavidas, Ilias; Le, Tuan; Lemos, Diana; Martinez, Jose Gonzalez; Maurel, Thomas; McDowall, Mark; McMahon, Aoife; Mohanan, Shamika; Moore, Benjamin; Nuhn, Michael; Oheh, Denye N.; Parker, Anne; Parton, Andrew; Patricio, Mateus; Sakthivel, Manoj Pandian; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sycheva, Mira; Szuba, Marek; Taylor, Kieron; Thormann, Anja; Threadgold, Glen; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Flint, Bethany; Frankish, Adam; Hunt, Sarah E.; Ilsley, Garth; Kostadima, Myrto; Langridge, Nick; Loveland, Jane E.; Martin, Fergal J.; Morales, Joannella; Mudge, Jonathan M.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Trevanion, Stephen J.; Cunningham, Fiona; Howe, Kevin L.; Zerbino, Daniel R.; Flicek, PaulShareSaveEnsembl Genomes 2020-enabling non-vertebrate genomic researchNUCLEIC ACIDS RESEARCH2019-10-10336OAAIHowe, Kevin L.; Contreras-Moreira, Bruno; De Silva, Nishadi; Maslen, Gareth; Akanni, Wasiu; Allen, James; Alvarez-Jarreta, Jorge; Barba, Matthieu; Bolser, Dan M.; Cambell, Lahcen; Carbajo, Manuel; Chakiachvili, Marc; Christensen, Mikkel; Cummins, Carla; Cuzick, Alayne; Davis, Paul; Fexova, Silvie; Gall, Astrid; George, Nancy; Gil, Laurent; Gupta, Parul; Hammond-Kosack, Kim E.; Haskell, Erin; Hunt, Sarah E.; Jaiswal, Pankaj; Janacek, Sophie H.; Kersey, Paul J.; Langridge, Nick; Maheswari, Uma; Maurel, Thomas; McDowall, Mark D.; Moore, Ben; Muffato, Matthieu; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Papatheodorou, Irene; Patricio, Mateus; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Rosello, Marc; Russell, Matthew; Sitnik, Vasily; Staines, Daniel M.; Stein, Joshua; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Wei, Sharon; Ware, Doreen; Williams, Gary; Yates, Andrew D.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2019-10-10336OAAIHowe, Kevin L.; Contreras-Moreira, Bruno; De Silva, Nishadi; Maslen, Gareth; Akanni, Wasiu; Allen, James; Alvarez-Jarreta, Jorge; Barba, Matthieu; Bolser, Dan M.; Cambell, Lahcen; Carbajo, Manuel; Chakiachvili, Marc; Christensen, Mikkel; Cummins, Carla; Cuzick, Alayne; Davis, Paul; Fexova, Silvie; Gall, Astrid; George, Nancy; Gil, Laurent; Gupta, Parul; Hammond-Kosack, Kim E.; Haskell, Erin; Hunt, Sarah E.; Jaiswal, Pankaj; Janacek, Sophie H.; Kersey, Paul J.; Langridge, Nick; Maheswari, Uma; Maurel, Thomas; McDowall, Mark D.; Moore, Ben; Muffato, Matthieu; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Papatheodorou, Irene; Patricio, Mateus; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Rosello, Marc; Russell, Matthew; Sitnik, Vasily; Staines, Daniel M.; Stein, Joshua; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Wei, Sharon; Ware, Doreen; Williams, Gary; Yates, Andrew D.; Flicek, PaulShareSaveAdvances and Applications in the Quest for Orthologs2019-06-2758OAAIGlover, Natasha; Dessimoz, Christophe; Ebersberger, Ingo; Forslund, Sofia K.; Gabaldon, Toni; Huerta-Cepas, Jaime; Martin, Maria-Jesus; Muffato, Matthieu; Patricio, Mateus; Pereira, Cecile; da Silva, Alan Sousa; Wang, Yan; Sonnhammer, Erik; Thomas, Paul D.; Altenhoff, Adrian; Blake, Judith A.; Capella-Gutierrez, Salvador; Chiba, Hirokazu; Dessimoz, Christophe; Durand, Dannie; Ebersberger, Ingo; Fernandez-Breis, Jesualdo Tomas; Forslund, Sofia; Gabaldon, Toni; Glover, Natasha; Huerta-Cepas, Jaime; Lecompte, Odile; Lewis, Suzanna; Linard, Benjamin; Houben, Marina Marcet; Marcotte, Edward M.; Martin, Maria-Jesus; McWhite, Claire; de Farias, Tarcisio Mendes; Muffato, Matthieu; Nevers, Yannis; Patricio, Mateus; Pereira, Cecile; Pryszcz, Leszek; Saha, Surya; Schiffer, Philipp; Sonnhammer, Erik; da Silva, Alan Sousa; Tang, Haiming; Thomas, Paul D.; Uchiyama, Ikuo; Wang, Yan
2019-06-2758OAAIGlover, Natasha; Dessimoz, Christophe; Ebersberger, Ingo; Forslund, Sofia K.; Gabaldon, Toni; Huerta-Cepas, Jaime; Martin, Maria-Jesus; Muffato, Matthieu; Patricio, Mateus; Pereira, Cecile; da Silva, Alan Sousa; Wang, Yan; Sonnhammer, Erik; Thomas, Paul D.; Altenhoff, Adrian; Blake, Judith A.; Capella-Gutierrez, Salvador; Chiba, Hirokazu; Dessimoz, Christophe; Durand, Dannie; Ebersberger, Ingo; Fernandez-Breis, Jesualdo Tomas; Forslund, Sofia; Gabaldon, Toni; Glover, Natasha; Huerta-Cepas, Jaime; Lecompte, Odile; Lewis, Suzanna; Linard, Benjamin; Houben, Marina Marcet; Marcotte, Edward M.; Martin, Maria-Jesus; McWhite, Claire; de Farias, Tarcisio Mendes; Muffato, Matthieu; Nevers, Yannis; Patricio, Mateus; Pereira, Cecile; Pryszcz, Leszek; Saha, Surya; Schiffer, Philipp; Sonnhammer, Erik; da Silva, Alan Sousa; Tang, Haiming; Thomas, Paul D.; Uchiyama, Ikuo; Wang, YanShareSaveThe comparative genomics and complex population history of Papio baboonsSCIENCE ADVANCES2019-01-04108OAAIRogers, Jeffrey; Raveendran, Muthuswamy; Harris, R. Alan; Mailund, Thomas; Leppala, Kalle; Athanasiadis, Georgios; Schierup, Mikkel Heide; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.
SCIENCE ADVANCESIF12.5
2019-01-04108OAAIRogers, Jeffrey; Raveendran, Muthuswamy; Harris, R. Alan; Mailund, Thomas; Leppala, Kalle; Athanasiadis, Georgios; Schierup, Mikkel Heide; Cheng, Jade; Munch, Kasper; Walker, Jerilyn A.; Konkel, Miriam K.; Jordan, Vallmer; Steely, Cody J.; Beckstrom, Thomas O.; Bergey, Christina; Burrell, Andrew; Schrempf, Dominik; Noll, Angela; Kothe, Maximillian; Kopp, Gisela H.; Liu, Yue; Murali, Shwetha; Billis, Konstantinos; Martin, Fergal J.; Muffato, Matthieu; Cox, Laura; Else, James; Disotell, Todd; Muzny, Donna M.; Phillips-Conroy, Jane; Aken, Bronwen; Eichler, Evan E.; Marques-Bonet, Tomas; Kosiol, Carolin; Batzer, Mark A.; Hahn, Matthew W.; Tung, Jenny; Zinner, Dietmar; Roos, Christian; Jolly, Clifford J.; Gibbs, Richard A.; Worley, Kim C.ShareSaveEnsembl 2019NUCLEIC ACIDS RESEARCH2018-11-08699OAAICunningham, Fiona; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Amode, M. Ridwan; Armean, Irina M.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar Jayantilal; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Marugan, Jose C.; Maurel, Thomas; McMahon, Aoife C.; Moore, Benjamin; Morales, Joannella; Mudge, Jonathan M.; Nuhn, Michael; Ogeh, Denye; Parker, Anne; Parton, Andrew; Patricio, Mateus; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Stapleton, Eloise; Szuba, Marek; Taylor, Kieron; Threadgold, Glen; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nick; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Aken, Bronwen L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2018-11-08699OAAICunningham, Fiona; Achuthan, Premanand; Akanni, Wasiu; Allen, James; Amode, M. Ridwan; Armean, Irina M.; Bennett, Ruth; Bhai, Jyothish; Billis, Konstantinos; Boddu, Sanjay; Cummins, Carla; Davidson, Claire; Dodiya, Kamalkumar Jayantilal; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Grego, Tiago; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; Kay, Mike; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Marugan, Jose C.; Maurel, Thomas; McMahon, Aoife C.; Moore, Benjamin; Morales, Joannella; Mudge, Jonathan M.; Nuhn, Michael; Ogeh, Denye; Parker, Anne; Parton, Andrew; Patricio, Mateus; Salam, Ahamed Imran Abdul; Schmitt, Bianca M.; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Stapleton, Eloise; Szuba, Marek; Taylor, Kieron; Threadgold, Glen; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Winterbottom, Andrea; Zadissa, Amonida; Chakiachvili, Marc; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nick; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Aken, Bronwen L.; Yates, Andrew D.; Zerbino, Daniel R.; Flicek, PaulShareSaveRepeat associated mechanisms of genome evolution and function revealed by the &ITMus caroli&IT and &ITMus pahari&IT genomesGENOME RESEARCH2018-03-2184OAAIThybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, Paul
GENOME RESEARCHIF5.5
2018-03-2184OAAIThybert, David; Roller, Masa; Navarro, Fabio C. P.; Fiddes, Ian; Streeter, Ian; Feig, Christine; Martin-Galvez, David; Kolmogorov, Mikhail; Janousek, Vaclav; Akanni, Wasiu; Aken, Bronwen; Aldridge, Sarah; Chakrapani, Varshith; Chow, William; Clarke, Laura; Cummins, Carla; Doran, Anthony; Dunn, Matthew; Goodstadt, Leo; Howe, Kerstin; Howell, Matthew; Josselin, Ambre-Aurore; Karn, Robert C.; Laukaitis, Christina M.; Jingtao, Lilue; Martin, Fergal; Muffato, Matthieu; Nachtweide, Stefanie; Quail, Michael A.; Sisu, Cristina; Stanke, Mario; Stefflova, Klara; Van Oosterhout, Cock; Veyrunes, Frederic; Ward, Ben; Yang, Fengtang; Yazdanifar, Golbahar; Zadissa, Amonida; Adams, David J.; Brazma, Alvis; Gerstein, Mark; Paten, Benedict; Pham, Son; Keane, Thomas M.; Odom, Duncan T.; Flicek, PaulShareSaveEnsembl 2018NUCLEIC ACIDS RESEARCH2017-11-162.2KOAAIZerbino, Daniel R.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Bhai, Jyothish; Billis, Konstantinos; Cummins, Carla; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Gordon, Leo; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; To, Jimmy Kiang; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Maurel, Thomas; McLaren, William; Moore, Benjamin; Mudge, Jonathan; Murphy, Daniel N.; Newman, Victoria; Nuhn, Michael; Ogeh, Denye; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Zadissa, Amonida; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nicholas; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Dan M.; Trevanion, Stephen J.; Aken, Bronwen L.; Cunningham, Fiona; Yates, Andrew; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2017-11-162.2KOAAIZerbino, Daniel R.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Bhai, Jyothish; Billis, Konstantinos; Cummins, Carla; Gall, Astrid; Giron, Carlos Garcia; Gil, Laurent; Gordon, Leo; Haggerty, Leanne; Haskell, Erin; Hourlier, Thibaut; Izuogu, Osagie G.; Janacek, Sophie H.; Juettemann, Thomas; To, Jimmy Kiang; Laird, Matthew R.; Lavidas, Ilias; Liu, Zhicheng; Loveland, Jane E.; Maurel, Thomas; McLaren, William; Moore, Benjamin; Mudge, Jonathan; Murphy, Daniel N.; Newman, Victoria; Nuhn, Michael; Ogeh, Denye; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Schuilenburg, Helen; Sheppard, Dan; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Zadissa, Amonida; Frankish, Adam; Hunt, Sarah E.; Kostadima, Myrto; Langridge, Nicholas; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Dan M.; Trevanion, Stephen J.; Aken, Bronwen L.; Cunningham, Fiona; Yates, Andrew; Flicek, PaulShareSaveEnsembl 2017NUCLEIC ACIDS RESEARCH2016-11-28457OAAIAken, Bronwen L.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Bernsdorff, Friederike; Bhai, Jyothish; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Juettemann, Thomas; Keenan, Stephen; Laird, Matthew R.; Lavidas, Ilias; Maurel, Thomas; McLaren, William; Moore, Benjamin; Murphy, Daniel N.; Nag, Rishi; Newman, Victoria; Nuhn, Michael; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Sheppard, Daniel; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Wilder, Steven P.; Zadissa, Amonida; Kostadima, Myrto; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2016-11-28457OAAIAken, Bronwen L.; Achuthan, Premanand; Akanni, Wasiu; Amode, M. Ridwan; Bernsdorff, Friederike; Bhai, Jyothish; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Juettemann, Thomas; Keenan, Stephen; Laird, Matthew R.; Lavidas, Ilias; Maurel, Thomas; McLaren, William; Moore, Benjamin; Murphy, Daniel N.; Nag, Rishi; Newman, Victoria; Nuhn, Michael; Ong, Chuang Kee; Parker, Anne; Patricio, Mateus; Riat, Harpreet Singh; Sheppard, Daniel; Sparrow, Helen; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Walts, Brandon; Wilder, Steven P.; Zadissa, Amonida; Kostadima, Myrto; Martin, Fergal J.; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Staines, Daniel M.; Trevanion, Stephen J.; Cunningham, Fiona; Yates, Andrew; Zerbino, Daniel R.; Flicek, PaulShareSaveStandardized benchmarking in the quest for orthologsNATURE METHODS2016-04-04151Altenhoff, Adrian M.; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; Dalquen, Daniel A.; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cecile; Pryszcz, Leszek P.; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clement-Marie; Bork, Peer; Lecompte, Odile; von Mering, Christian; Xenarios, Ioannis; Sjolander, Kimmen; Jensen, Lars Juhl; Martin, Maria J.; Muffato, Matthieu; Gabaldon, Toni; Lewis, Suzanna E.; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, Christophe
NATURE METHODSIF32.1
2016-04-04151PREAI
Altenhoff, Adrian M.; Boeckmann, Brigitte; Capella-Gutierrez, Salvador; Dalquen, Daniel A.; DeLuca, Todd; Forslund, Kristoffer; Huerta-Cepas, Jaime; Linard, Benjamin; Pereira, Cecile; Pryszcz, Leszek P.; Schreiber, Fabian; da Silva, Alan Sousa; Szklarczyk, Damian; Train, Clement-Marie; Bork, Peer; Lecompte, Odile; von Mering, Christian; Xenarios, Ioannis; Sjolander, Kimmen; Jensen, Lars Juhl; Martin, Maria J.; Muffato, Matthieu; Gabaldon, Toni; Lewis, Suzanna E.; Thomas, Paul D.; Sonnhammer, Erik; Dessimoz, ChristopheShareSavencRNA orthologies in the vertebrate lineage2016-03-1518OAAIPignatelli, Miguel; Vilella, Albert J.; Muffato, Matthieu; Gordon, Leo; White, Simon; Flicek, Paul; Herrero, Javier
2016-03-1518OAAIPignatelli, Miguel; Vilella, Albert J.; Muffato, Matthieu; Gordon, Leo; White, Simon; Flicek, Paul; Herrero, JavierShareSaveEnsembl comparative genomics resources2016-02-20297OAAIHerrero, Javier; Muffato, Matthieu; Beal, Kathryn; Fitzgerald, Stephen; Gordon, Leo; Pignatelli, Miguel; Vilella, Albert J.; Searle, Stephen M. J.; Amode, Ridwan; Brent, Simon; Spooner, William; Kulesha, Eugene; Yates, Andrew; Flicek, Paul
2016-02-20297OAAIHerrero, Javier; Muffato, Matthieu; Beal, Kathryn; Fitzgerald, Stephen; Gordon, Leo; Pignatelli, Miguel; Vilella, Albert J.; Searle, Stephen M. J.; Amode, Ridwan; Brent, Simon; Spooner, William; Kulesha, Eugene; Yates, Andrew; Flicek, PaulShareSaveEnsembl 2016NUCLEIC ACIDS RESEARCH2015-12-191.2KOAAIYates, Andrew; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Fitzgerald, Stephen; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Johnson, Nathan; Juettemann, Thomas; Keenan, Stephen; Lavidas, Ilias; Martin, Fergal J.; Maurel, Thomas; McLaren, William; Murphy, Daniel N.; Nag, Rishi; Nuhn, Michael; Parker, Anne; Patricio, Mateus; Pignatelli, Miguel; Rahtz, Matthew; Riat, Harpreet Singh; Sheppard, Daniel; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Harrow, Jennifer; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Spudich, Giulietta; Trevanion, Stephen J.; Cunningham, Fiona; Aken, Bronwen L.; Zerbino, Daniel R.; Flicek, Paul
NUCLEIC ACIDS RESEARCHIF13.1
2015-12-191.2KOAAIYates, Andrew; Akanni, Wasiu; Amode, M. Ridwan; Barrell, Daniel; Billis, Konstantinos; Carvalho-Silva, Denise; Cummins, Carla; Clapham, Peter; Fitzgerald, Stephen; Gil, Laurent; Giron, Carlos Garcia; Gordon, Leo; Hourlier, Thibaut; Hunt, Sarah E.; Janacek, Sophie H.; Johnson, Nathan; Juettemann, Thomas; Keenan, Stephen; Lavidas, Ilias; Martin, Fergal J.; Maurel, Thomas; McLaren, William; Murphy, Daniel N.; Nag, Rishi; Nuhn, Michael; Parker, Anne; Patricio, Mateus; Pignatelli, Miguel; Rahtz, Matthew; Riat, Harpreet Singh; Sheppard, Daniel; Taylor, Kieron; Thormann, Anja; Vullo, Alessandro; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Harrow, Jennifer; Muffato, Matthieu; Perry, Emily; Ruffier, Magali; Spudich, Giulietta; Trevanion, Stephen J.; Cunningham, Fiona; Aken, Bronwen L.; Zerbino, Daniel R.; Flicek, PaulShareSaveQuest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream2015-07-0119OAAIBoeckmann, Brigitte; Marcet-Houben, Marina; Rees, Jonathan A.; Forslund, Kristoffer; Huerta-Cepas, Jaime; Muffato, Matthieu; Yilmaz, Pelin; Xenarios, Ioannis; Bork, Peer; Lewis, Suzanna E.; Gabaldon, Toni
2015-07-0119OAAIBoeckmann, Brigitte; Marcet-Houben, Marina; Rees, Jonathan A.; Forslund, Kristoffer; Huerta-Cepas, Jaime; Muffato, Matthieu; Yilmaz, Pelin; Xenarios, Ioannis; Bork, Peer; Lewis, Suzanna E.; Gabaldon, ToniShareSaveCurrent Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic InferenceSYSTEMATIC BIOLOGY2015-06-01197OAAITan, Ge; Muffato, Matthieu; Ledergerber, Christian; Herrero, Javier; Goldman, Nick; Gil, Manuel; Dessimoz, Christophe
SYSTEMATIC BIOLOGYIF5.7
2015-06-01197OAAITan, Ge; Muffato, Matthieu; Ledergerber, Christian; Herrero, Javier; Goldman, Nick; Gil, Manuel; Dessimoz, ChristopheShareSaveResearch Directions
No research directions