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Depeng Wang

grandomics biosciences , no.1, east nengyuan road, beijing 102200 ,

34H-index
98Paper Count
7.1KCitation Count
Published Papers 35
Publication Date
BVSim: A benchmarking variation simulator mimicking human variation spectrum
err2025-08-30
err0
errOAAI
errYongyi Luo; Zhen Zhang; Shu Wang; Jiandong Shi; Jingyu Hao; Sheng Lian; Taobo Hu; Toyotaka Ishibashi; Depeng Wang; Weichuan Yu; Xiaodan Fan
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Intronic VNTRs downregulate expression of HSF1 and confer genetic risk of essential tremor
errBRAIN
IF11.7
err2025-08-01
err0
PREAI
errBi, Hongyan; Wan, Yalan; Zhao, Rongrong; Pan, Shirang; Luan, Mingyue; Wu, Wei; Qiu, Yusen; Yu, Jiaxi; Sun, Yunchuang; Wei, Luhua; Chen, Jing; Li, Fan; Sun, Wei; Wang, Lin; Wang, Xue; Zhao, Wenlu; Wang, Depeng; Tuo, Houzhen; Zhang, Yongbo; Zhang, Wei; Huang, Yining; Yuan, Yun; Hong, Daojun; Wang, Zhaoxia; Deng, Jianwen
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NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads
err2024-04-26
err40
errOAAI
errHu, Jiang; Wang, Zhuo; Sun, Zongyi; Hu, Benxia; Ayoola, Adeola Oluwakemi; Liang, Fan; Li, Jingjing; Sandoval, Jose R.; Cooper, David N.; Ye, Kai; Ruan, Jue; Xiao, Chuan-Le; Wang, Depeng; Wu, Dong-Dong; Wang, Sheng
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NextPolish2: A Repeat-aware Polishing Tool for Genomes Assembled Using HiFi Long Reads
err2024-01-04
err9
errOAAI
errHu, Jiang; Wang, Zhuo; Liang, Fan; Liu, Shan-Lin; Ye, Kai; Wang, De-Peng
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Structural variants involved in high-altitude adaptation detected using single-molecule long-read sequencing
err2023-12-13
err2
errOAAI
errShi, Jinlong; Jia, Zhilong; Sun, Jinxiu; Wang, Xiaoreng; Zhao, Xiaojing; Zhao, Chenghui; Liang, Fan; Song, Xinyu; Guan, Jiawei; Jia, Xue; Yang, Jing; Chen, Qi; Yu, Kang; Jia, Qian; Wu, Jing; Wang, Depeng; Xiao, Yuhui; Xu, Xiaoman; Liu, Yinzhe; Wu, Shijing; Zhong, Qin; Wu, Jue; Cui, Saijia; Bo, Xiaochen; Wu, Zhenzhou; Park, Minsung; Kellis, Manolis; He, Kunlun
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Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance
err2023-11-27
err5
errOAAI
errRen, Luyao; Duan, Xiaoke; Dong, Lianhua; Zhang, Rui; Yang, Jingcheng; Gao, Yuechen; Peng, Rongxue; Hou, Wanwan; Liu, Yaqing; Li, Jingjing; Yu, Ying; Zhang, Naixin; Shang, Jun; Liang, Fan; Wang, Depeng; Chen, Hui; Sun, Lele; Hao, Lingtong; Scherer, Andreas; Nordlund, Jessica; Xiao, Wenming; Xu, Joshua; Tong, Weida; Hu, Xin; Jia, Peng; Ye, Kai; Li, Jinming; Jin, Li; Hong, Huixiao; Wang, Jing; Fan, Shaohua; Fang, Xiang; Zheng, Yuanting; Shi, Leming
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Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials
err2023-09-07
err22
errOAAI
errZheng, Yuanting; Liu, Yaqing; Yang, Jingcheng; Dong, Lianhua; Zhang, Rui; Tian, Sha; Yu, Ying; Ren, Luyao; Hou, Wanwan; Zhu, Feng; Mai, Yuanbang; Han, Jinxiong; Zhang, Lijun; Jiang, Hui; Lin, Ling; Lou, Jingwei; Li, Ruiqiang; Lin, Jingchao; Liu, Huafen; Kong, Ziqing; Wang, Depeng; Dai, Fangping; Bao, Ding; Cao, Zehui; Chen, Qiaochu; Chen, Qingwang; Chen, Xingdong; Gao, Yuechen; Jiang, He; Li, Bin; Li, Bingying; Li, Jingjing; Liu, Ruimei; Qing, Tao; Shang, Erfei; Shang, Jun; Sun, Shanyue; Wang, Haiyan; Wang, Xiaolin; Zhang, Naixin; Zhang, Peipei; Zhang, Ruolan; Zhu, Sibo; Scherer, Andreas; Wang, Jiucun; Wang, Jing; Huo, Yinbo; Liu, Gang; Cao, Chengming; Shao, Li; Xu, Joshua; Hong, Huixiao; Xiao, Wenming; Liang, Xiaozhen; Lu, Daru; Jin, Li; Tong, Weida; Ding, Chen; Li, Jinming; Fang, Xiang; Shi, Leming
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Plant-on-chip: Core morphogenesis processes in the tiny plant Wolffia australiana
err2023-04-19
err8
errOAAI
errLi, Feng; Yang, Jing-Jing; Sun, Zong-Yi; Wang, Lei; Qi, Le-Yao; Sina, A.; Liu, Yi-Qun; Zhang, Hong-Mei; Dang, Lei-Fan; Wang, Shu-Jing; Luo, Chun-Xiong; Nian, Wei-Feng; O'Conner, Seth; Ju, Long-Zhen; Quan, Wei-Peng; Li, Xiao-Kang; Wang, Chao; Wang, De-Peng; You, Han-Li; Cheng, Zhu-Kuan; Yan, Jia; Tang, Fu-Chou; Yang, De-Chang; Xia, Chu-Wei; Gao, Ge; Wang, Yan; Zhang, Bao-Cai; Zhou, Yi-Hua; Guo, Xing; Xiang, Sun-Huan; Liu, Huan; Peng, Tian-Bo; Su, Xiao-Dong; Chen, Yong; Ouyang, Qi; Wang, Dong-Hui; Zhang, Da-Ming; Xu, Zhi-Hong; Hou, Hong-Wei; Bai, Shu-Nong; Li, Ling
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Large-scale interrogation of retinal cell functions by 1-photon light-sheet microscopy
err2023-04-01
err1
errOAAI
errRoy, Suva; Wang, Depeng; Rudzite, Andra M.; Perry, Benjamin; Scalabrino, Miranda L.; Thapa, Mishek; Gong, Yiyang; Sher, Alexander; Field, Greg D.
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Identification and characterization of two DMD pedigrees with large inversion mutations based on a long-read sequencing pipeline
err2022-10-05
err9
PREAI
errGeng, Chang; Zhang, Ciliu; Li, Pidong; Tong, Yuanren; Zhu, Baosheng; He, Jing; Zhao, Yanhuan; Yao, Fengxia; Cui, Li-Ying; Liang, Fan; Wang, Yang; Wang, Yaru; Jin, Hongshuai; Lang, Dandan; Liu, Shanlin; Wang, Depeng; Park, Min S.; Chen, Lin; Peng, Jing; Dai, Yi
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Subsarcolemmal and cytoplasmic p62 positivity and rimmed vacuoles are distinctive for PLIN4-myopathy
err2022-09-24
err5
errOAAI
errWang, Qi; Yu, Meng; Zhang, Wei; Gang, Qiang; Xie, Zhiying; Xu, Jin; Zhou, Chao; Wang, Depeng; Meng, Lingchao; Lv, He; Jia, Zhirong; Deng, Jianwen; Yuan, Yun; Wang, Zhaoxia
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Integrated characterization of SARS-CoV-2 genome, microbiome, antibiotic resistance and host response from single throat swabs (vol 7, 19, 2021)
err2022-08-10
err0
errOAAI
errLu, Bo; Yan, Yi; Dong, Liting; Han, Lingling; Liu, Yawei; Yu, Junping; Chen, Jianjun; Yi, Danyang; Zhang, Meiling; Deng, Xin; Wang, Chao; Wang, Runkun; Wang, Depeng; Wei, Hongping; Liu, Di; Yi, Chengqi
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Short- and long-read metagenomics expand individualized structural variations in gut microbiomes
err2022-06-08
err48
errOAAI
errChen, Liang; Zhao, Na; Cao, Jiabao; Liu, Xiaolin; Xu, Jiayue; Ma, Yue; Yu, Ying; Zhang, Xuan; Zhang, Wenhui; Guan, Xiangyu; Yu, Xiaotong; Liu, Zhipeng; Fan, Yanqun; Wang, Yang; Liang, Fan; Wang, Depeng; Zhao, Linhua; Song, Moshi; Wang, Jun
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Correction to: Rapid Acquisition of High-Quality SARS-CoV-2 Genome via Amplicon-Oxford Nanopore Sequencing
err2021-11-17
err0
errOAAI
errYi Yan; Ke Wu; Jun Chen; Haizhou Liu; Yi Huang; Yong Zhang; Jin Xiong; Weipeng Quan; Xin Wu; Yu Liang; Kunlun He; Zhilong Jia; Depeng Wang; Di Liu; Hongping Wei; Jianjun Chen
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Charting the complexity of the activated sludge microbiome through a hybrid sequencing strategy
err2021-10-15
err39
errOAAI
errLiu, Lei; Wang, Yulin; Yang, Yu; Wang, Depeng; Cheng, Suk Hang; Zheng, Chunmiao; Zhang, Tong
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Robust Benchmark Structural Variant Calls of An Asian Using State-of-the-art Long-read Sequencing Technologies
err2021-03-02
err5
errOAAI
errDu, Xiao; Li, Lili; Liang, Fan; Liu, Sanyang; Zhang, Wenxin; Sun, Shuai; Sun, Yuhui; Fan, Fei; Wang, Linying; Liang, Xinming; Qiu, Weijin; Fan, Guangyi; Wang, Ou; Yang, Weifei; Zhang, Jiezhong; Xiao, Yuhui; Wang, Yang; Wang, Depeng; Qu, Shoufang; Chen, Fang; Huang, Jie
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Efficient assembly of nanopore reads via highly accurate and intact error correction
err2021-01-04
err227
errOAAI
errChen, Ying; Nie, Fan; Xie, Shang-Qian; Zheng, Ying-Feng; Dai, Qi; Bray, Thomas; Wang, Yao-Xin; Xing, Jian-Feng; Huang, Zhi-Jian; Wang, De-Peng; He, Li-Juan; Luo, Feng; Wang, Jian-Xin; Liu, Yi-Zhi; Xiao, Chuan-Le
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Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
err2020-12-15
err97
errOAAI
errLang, Dandan; Zhang, Shilai; Ren, Pingping; Liang, Fan; Sun, Zongyi; Meng, Guanliang; Tan, Yuntao; Li, Xiaokang; Lai, Qihua; Han, Lingling; Wang, Depeng; Hu, Fengyi; Wang, Wen; Liu, Shanlin
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Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing (vol 6, 31, 2020)
err2020-06-20
err8
errOAAI
errWen, Wen; Su, Wenru; Tang, Hao; Le, Wenqing; Zhang, Xiaopeng; Zheng, Yingfeng; Liu, Xiuxing; Xie, Lihui; Li, Jianmin; Ye, Jinguo; Dong, Liwei; Cui, Xiuliang; Miao, Yushan; Wang, Depeng; Dong, Jiantao; Xiao, Chuanle; Chen, Wei; Wang, Hongyang
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