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An nf-core framework for the systematic comparison of alternative modeling tools: the multiple sequence alignment case study Santus, Luisa; Espinosa-Carrasco, Jose; Rauschning, Leon; Mir-Pedrol, Julia; Trujnara, Igor; Vignoli, Alessio; Mansouri, Leila; Baltzis, Athanasios; Floden, Evan W.; Di Tommaso, Paolo; Garriga, Edgar; Gudys, Adam; Deorowicz, Sebastian; Gilchrist, Cameron; Steinegger, Martin; Notredame, Cedric Share Save
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A long noncoding RNA promotes parasite differentiation in African trypanosomes Guegan, Fabien; Rajan, K. Shanmugha; Bento, Fabio; Pinto-Neves, Daniel; Sequeira, Mariana; Guminska, Natalia; Mroczek, Seweryn; Dziembowski, Andrzej; Cohen-Chalamish, Smadar; Doniger, Tirza; Galili, Beathrice; Estevez, Antonio M.; Notredame, Cedric; Michaeli, Shulamit; Figueiredo, Luisa M. Share Save
Large multiple sequence alignments with a root-to-leaf regressive method Garriga, Edgar; Di Tommaso, Paolo; Magis, Cedrik; Erb, Ionas; Mansouri, Leila; Baltzis, Athanasios; Laayouni, Hafid; Kondrashov, Fyodor; Floden, Evan; Notredame, Cedric Share Save
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Haplotype selection as an adaptive mechanism in the protozoan pathogen Leishmania donovani Prieto Barja, Pablo; Pescher, Pascale; Bussotti, Giovanni; Dumetz, Franck; Imamura, Hideo; Kedra, Darek; Domagalska, Malgorzata; Chaumeau, Victor; Himmelbauer, Heinz; Pages, Michel; Sterkers, Yvon; Dujardin, Jean-Claude; Notredame, Cedric; Spath, Gerald Frank Share Save
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Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx Abascal, Federico; Corvelo, Andre; Cruz, Fernando; Villanueva-Canas, Jose L.; Vlasova, Anna; Marcet-Houben, Marina; Martinez-Cruz, Begona; Cheng, Jade Yu; Prieto, Pablo; Quesada, Victor; Quilez, Javier; Li, Gang; Garcia, Francisca; Rubio-Camarillo, Miriam; Frias, Leonor; Ribeca, Paolo; Capella-Gutierrez, Salvador; Rodriguez, Jose M.; Camara, Francisco; Lowy, Ernesto; Cozzuto, Luca; Erb, Ionas; Tress, Michael L.; Rodriguez-Ales, Jose L.; Ruiz-Orera, Jorge; Reverter, Ferran; Casas-Marce, Mireia; Soriano, Laura; Arango, Javier R.; Derdak, Sophia; Galan, Beatriz; Blanc, Julie; Gut, Marta; Lorente-Galdos, Belen; Andres-Nieto, Marta; Lopez-Otin, Carlos; Valencia, Alfonso; Gut, Ivo; Garcia, Jose L.; Guigo, Roderic; Murphy, William J.; Ruiz-Herrera, Aurora; Marques-Bonet, Tomas; Roma, Guglielmo; Notredame, Cedric; Mailund, Thomas; Mar Alba, M.; Gabaldon, Toni; Alioto, Tyler; Godoy, Jose A. Share Save
Improved definition of the mouse transcriptome via targeted RNA sequencing Bussotti, Giovanni; Leonardi, Tommaso; Clark, Michael B.; Mercer, Tim R.; Crawford, Joanna; Malquori, Lorenzo; Notredame, Cedric; Dinger, Marcel E.; Mattick, John S.; Enright, Anton J. Share Save
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Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes Vlasova, Anna; Capella-Gutierrez, Salvador; Rendon-Anaya, Martha; Hernandez-Onate, Miguel; Minoche, Andre E.; Erb, Ionas; Camara, Francisco; Prieto-Barja, Pablo; Corvelo, Andre; Sanseverino, Walter; Westergaard, Gaston; Dohm, Juliane C.; Pappas, Georgios J., Jr.; Saburido-Alvarez, Soledad; Kedra, Darek; Gonzalez, Irene; Cozzuto, Luca; Gomez-Garrido, Jessica; Aguilar-Moron, Maria A.; Andreu, Nuria; Mario Aguilar, O.; Garcia-Mas, Jordi; Zehnsdorf, Maik; Vazquezi, Martin P.; Delgado-Salinas, Alfonso; Delaye, Luis; Lowy, Ernesto; Mentaberry, Alejandro; Vianello-Brondani, Rosana P.; Luis Garcia, Jose; Alioto, Tyler; Sanchez, Federico; Himmelbauer, Heinz; Santalla, Marta; Notredame, Cedric; Gabaldon, Toni; Herrera-Estrella, Alfredo; Guigo, Roderic Share Save
CARMEN, a human super enhancer-associated long noncoding RNA controlling cardiac specification, differentiation and homeostasis Ounzain, Samir; Micheletti, Rudi; Arnan, Carme; Plaisance, Isabelle; Cecchi, Dario; Schroen, Blanche; Reverter, Ferran; Alexanian, Michael; Gonzales, Christine; Ng, Shi Yan; Bussotti, Giovanni; Pezzuto, Iole; Notredame, Cedric; Heymans, Stephane; Guigo, Roderic; Johnson, Rory; Pedrazzini, Thierry Share Save
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