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Lira Mamanova

wellcome sanger institute

35H-index
90Paper Count
9.9KCitation Count
Published Papers 30
Publication Date
Single cell transcriptional evolution of myeloid leukemia of Down syndrome
err2026-04-23
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errOAAI
errMi K. Trinh; Konstantin Schuschel; Hasan Issa; Rebecca Thomas; Conor Parks; Agnes Oszlanczi; Toochi Ogbonnah; Di Zhou; Lira Mamanova; Elena Prigmore; Emilia R. Robertson; Angus Hodder; Anna Wenger; Nathaniel D. Anderson; Holly J. Whitfield; Taryn D. Treger; José Gonçalves-Dias; Karin Straathof; David O’Connor; Matthew D. Young; Laura Jardine; Stuart Adams; Jan-Henning Klusmann; Jack Bartram; Sam Behjati
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Multimodal profiling reveals tissue-directed signatures of human immune cells altered with age
err2025-08-13
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errOAAI
errSteven B. Wells; Daniel B. Rainbow; Michal Mark; Peter A. Szabo; Can Ergen; Daniel P. Caron; Ana Raquel Maceiras; Elior Rahmani; Eli Benuck; Valeh Valiollah Pour Amiri; David Chen; Allon Wagner; Sarah K. Howlett; Lorna B. Jarvis; Karen L. Ellis; Masaru Kubota; Rei Matsumoto; Krishnaa Mahbubani; Kouresh Saeb-Parsy; Cecilia Dominguez Conde; Laura Richardson; Chuan Xu; Shuang Li; Lira Mamanova; Liam Bolt; Alicja Wilk; Sarah A. Teichmann; Donna L. Farber; Peter A. Sims; Joanne L. Jones; Nir Yosef
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Single-cell transcriptomics identifies chondrocyte differentiation dynamics in vivo and in vitro
err2025-07-24
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errOAAI
errJohn E.G. Lawrence; Steven Woods; Kenny Roberts; Dinithi Sumanaweera; Petra Balogh; Tong Li; Alexander V. Predeus; Peng He; Krzysztof Polanski; Elena Prigmore; Elizabeth Tuck; Lira Mamanova; Di Zhou; Simone Webb; Laura Jardine; Xiaoling He; Roger A. Barker; Muzlifah Haniffa; Adrienne M. Flanagan; Matthew J. Young; Sam Behjati; Omer Bayraktar; Susan J. Kimber; Sarah A. Teichmann
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Early human lung immune cell development and its role in epithelial cell fate
err2024-10-30
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errBarnes, Josephine; Yoshida, Masahiro; He, Peng; Worlock, Kaylee; Lindeboom, Rik; Suo, Chenqu; Pett, J. Patrick; Wilbrey-Clark, Anna; Dann, Emma; Mamanova, Lira; Richardson, Laura; Polanski, Krzysztof; Pennycuick, Adam; Allen-Hytinnen, Jessica; Herczeg, Ivan; Arzili, Romina; Hynds, Robert; Teixeira, Vitor; Haniffa, Muzlifah; Lim, Kyungtae; Sun, Dawei; Rawlins, Emma; Oliver, Amanda; Lyons, Paul; Marioni, John; Ruhrberg, Christiana; Tuong, Zewen; Clatworthy, Menna; Reading, James; Janes, Sam; Teichmann, Sarah; Meyer, Kerstin; Nikolic, Marko
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Human SARS-CoV-2 challenge uncovers differences in local and systemic cellular responses associated with protection from infection and distinct infection states
err2024-10-30
err0
PREAI
errWorlock, Kaylee; Lindeboom, Rik G. H.; Dratva, Lisa; Yoshida, Masahiro; Scobie, David; Wagstaffe, Helen; Richardson, Laura; Wilbrey-Clark, Anna; Barnes, Josephine; Mehta, Puja; Kretschmer, Lorenz; Polanski, Krzysztof; Allen-Hyttinen, Jessica; Sumanaweera, Dinithi; Boccacino, Jacqueline M.; Sungnak, Waradon; Elmentaite, Rasa; Huang, Ni; Mamanova, Lira; Kapuge, Rakeshlal; Bolt, Liam; Prigmore, Elena; Kilingley, Ben; Kalinova, Mariya; Mayer, Maria; Boyers, Alison; Mann, Alex; Swadling, Leo; Woodall, Maximillian; Ellis, Samuel; Smith, Claire M.; Teixeira, Vitor; Janes, Sam M.; Chambers, Rachel C.; Haniffa, Muzlifah; Catchpole, Andrew; Heyderman, Rob; Noursadeghi, Mahdad; Chain, Benny; Mayer, Andreas; Meyer, Kerstin B.; Chiu, Christopher; Teichmann, Sarah A.; Nikolic, Marko Z.
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Early human lung immune cell development and its role in epithelial cell fate
err2023-12-22
err14
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errBarnes, Josephine L.; Yoshida, Masahiro; He, Peng; Worlock, Kaylee B.; Lindeboom, Rik G. H.; Suo, Chenqu; Pett, J. Patrick; Wilbrey-Clark, Anna; Dann, Emma; Mamanova, Lira; Richardson, Laura; Polanski, Krzysztof; Pennycuick, Adam; Allen-Hyttinen, Jessica; Herczeg, Ivan T.; Arzili, Romina; Hynds, Robert E.; Teixeira, Vitor H.; Haniffa, Muzlifah; Lim, Kyungtae; Sun, Dawei; Rawlins, Emma L.; Oliver, Amanda J.; Lyons, Paul A.; Marioni, John C.; Ruhrberg, Christiana; Tuong, Zewen Kelvin; Clatworthy, Menna R.; Reading, James L.; Janes, Sam M.; Teichmann, Sarah A.; Meyer, Kerstin B.; Nikolic, Marko Z.
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Systematic benchmarking of single-cell ATAC-sequencing protocols
err2023-08-03
err13
errOAAI
errDe Rop, Florian V.; Hulselmans, Gert; Flerin, Chris; Soler-Vila, Paula; Rafels, Albert; Christiaens, Valerie; Gonzalez-Blas, Carmen Bravo; Marchese, Domenica; Caratu, Ginevra; Poovathingal, Suresh; Rozenblatt-Rosen, Orit; Slyper, Michael; Luo, Wendy; Muus, Christoph; Duarte, Fabiana; Shrestha, Rojesh; Bagdatli, S. Tansu; Corces, M. Ryan; Mamanova, Lira; Knights, Andrew; Meyer, Kerstin B.; Mulqueen, Ryan; Taherinasab, Akram; Maschmeyer, Patrick; Pezoldt, Jörn; Lambert, Camille Lucie Germaine; Iglesias, Marta; Najle, Sebastian R.; Dossani, Zain Y.; Martelotto, Luciano G.; Burkett, Zach; Lebofsky, Ronald; Martin-Subero, Jose Ignacio; Pillai, Satish; Sebe-Pedros, Arnau; Deplancke, Bart; Teichmann, Sarah A.; Ludwig, Leif S.; Braun, Theodore P.; Adey, Andrew C.; Greenleaf, William J.; Buenrostro, Jason D.; Regev, Aviv; Aerts, Stein; Heyn, Holger
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A spatially resolved atlas of the human lung characterizes a gland-associated immune niche
err2022-12-21
err60
errOAAI
errMadissoon, Elo; Oliver, Amanda J.; Kleshchevnikov, Vitalii; Wilbrey-Clark, Anna; Polanski, Krzysztof; Richoz, Nathan; Orsi, Ana Ribeiro; Mamanova, Lira; Bolt, Liam; Elmentaite, Rasa; Pett, J. Patrick; Huang, Ni; Xu, Chuan; He, Peng; Dabrowska, Monika; Pritchard, Sophie; Tuck, Liz; Prigmore, Elena; Perera, Shani; Knights, Andrew; Oszlanczi, Agnes; Hunter, Adam; Vieira, Sara F.; Patel, Minal; Lindeboom, Rik G. H.; Campos, Lia S.; Matsuo, Kazuhiko; Nakayama, Takashi; Yoshida, Masahiro; Worlock, Kaylee B.; Nikolic, Marko Z.; Georgakopoulos, Nikitas; Mahbubani, Krishnaa T.; Saeb-Parsy, Kourosh; Bayraktar, Omer Ali; Clatworthy, Menna R.; Stegle, Oliver; Kumasaka, Natsuhiko; Teichmann, Sarah A.; Meyer, Kerstin B.
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Single-cell Atlas of common variable immunodeficiency shows germinal center-associated epigenetic dysregulation in B-cell responses
err2022-04-01
err33
errOAAI
errRodriguez-Ubreva, Javier; Arutyunyan, Anna; Bonder, Marc Jan; Del Pino-Molina, Lucia; Clark, Stephen J.; de la Calle-Fabregat, Carlos; Garcia-Alonso, Luz; Handfield, Louis-Francois; Ciudad, Laura; Andres-Leon, Eduardo; Krueger, Felix; Catala-Moll, Francesc; Rodriguez-Cortez, Virginia C.; Polanski, Krzysztof; Mamanova, Lira; van Dongen, Stijn; Kiselev, Vladimir Yu; Martinez-Saavedra, Maria T.; Heyn, Holger; Martin, Javier; Warnatz, Klaus; Lopez-Granados, Eduardo; Rodriguez-Gallego, Carlos; Stegle, Oliver; Kelsey, Gavin; Vento-Tormo, Roser; Ballestar, Esteban
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MultiMAP: dimensionality reduction and integration of multimodal data
err2021-12-20
err37
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errJain, Mika Sarkin; Polanski, Krzysztof; Conde, Cecilia Dominguez; Chen, Xi; Park, Jongeun; Mamanova, Lira; Knights, Andrew; Botting, Rachel A.; Stephenson, Emily; Haniffa, Muzlifah; Lamacraft, Austen; Efremova, Mirjana; Teichmann, Sarah A.
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Late Breaking Abstract - A multiomic micro- and macro-anatomical cell atlas of the human lungs and airways
err2021-11-25
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PREAI
errMeyer, Kerstin; Madisoon, Elo; Wilbrey-Clark, Anna; Kleshchevnikov, Vitalii; Orsi, Ana Ribeiro; Polanski, Krzysztof; Mamanova, Lira; Bolt, Liam; Oliver, Amanda; Kumasaka, Natsuhiko; Huang, Ni; Elmentaite, Rasa; Weller, Juliana; Pett, Jan Patrick; He, Peng; Dabrowska, Monika; Tuck, Liz; Prigmore, Elena; Knights, Andrew; Pritchard, Sophie; Hunter, Adam; Vieira, Sarah; Patel, Minal; Georgakopoulos, Nikitas; Muhbubani, Krishnaa; Saeb-Parsy, Kourosh; Stegle, Oliver; Teichmann, Sarah
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THE LOCAL AND SYSTEMIC RESPONSE TO SARS-COV-2 INFECTION IN CHILDREN AND ADULTS
errTHORAX
IF7.7
err2021-11-08
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errOAAI
errWorlock, K. B.; Yoshida, M.; Lindeboom, R. G. H.; Huang, N.; Butler, C. R.; Kumasaka, N.; Conde, C. Dominguez; Mamanova, L.; Bolt, L.; Richardson, L.; Polanski, K.; Madissoon, E.; Barnes, J. L.; Allen-Hyttinen, J.; Kilich, E.; Jones, B. C.; de Wilton, A.; Wilbrey-Clark, A.; Sungnak, W.; Pett, J. P.; Prigmore, E.; Yung, H.; Mehta, P.; Saleh, A.; Saigal, A.; Chu, V.; Cohen, J. M.; Cane, C.; Iordanidou, A.; Shibuya, S.; Reuschl, A-K; Argento, A. C.; Wunderink, R. G.; Smith, S. B.; Poor, T. A.; Gao, C. A.; Dematte, J. E.; Reynolds, G.; Haniffa, M.; Bowyer, G. S.; Coates, M.; Clatworthy, M. R.; Calero-Nieto, F. J.; Gottgens, B.; O'Callaghan, C.; Sebire, N. J.; Jolly, C.; de Coppi, P.; Smith, C. M.; Misharin, A. V.; Janes, S. M.; Teichmann, S. A.; Meyer, K. B.; Nikolic, M. Z.
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Single cell derived mRNA signals across human kidney tumors
err2021-06-23
err23
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errYoung, Matthew D.; Mitchell, Thomas J.; Custers, Lars; Margaritis, Thanasis; Morales-Rodriguez, Francisco; Kwakwa, Kwasi; Khabirova, Eleonora; Kildisiute, Gerda; Oliver, Thomas R. W.; de Krijger, Ronald R.; van den Heuvel-Eibrink, Marry M.; Comitani, Federico; Piapi, Alice; Bugallo-Blanco, Eva; Thevanesan, Christine; Burke, Christina; Prigmore, Elena; Ambridge, Kirsty; Roberts, Kenny; Braga, Felipe A. Vieira; Coorens, Tim H. H.; Del Valle, Ignacio; Wilbrey-Clark, Anna; Mamanova, Lira; Stewart, Grant D.; Gnanapragasam, Vincent J.; Rampling, Dyanne; Sebire, Neil; Coleman, Nicholas; Hook, Liz; Warren, Anne; Haniffa, Muzlifah; Kool, Marcel; Pfister, Stefan M.; Achermann, John C.; He, Xiaoling; Barker, Roger A.; Shlien, Adam; Bayraktar, Omer A.; Teichmann, Sarah A.; Holstege, Frank C.; Meyer, Kerstin B.; Drost, Jarno; Straathof, Karin; Behjati, Sam
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High-throughput full-length single-cell RNA-seq automation
err2021-05-14
err10
PREAI
errMamanova, Lira; Miao, Zhichao; Jinat, Ayesha; Ellis, Peter; Shirley, Lesley; Teichmann, Sarah A.
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Somatic mutations and single-cell transcriptomes reveal the root of malignant rhabdoid tumours
err2021-03-03
err50
errOAAI
errCusters, Lars; Khabirova, Eleonora; Coorens, Tim H. H.; Oliver, Thomas R. W.; Calandrini, Camilla; Young, Matthew D.; Braga, Felipe A. Vieira; Ellis, Peter; Mamanova, Lira; Segers, Heidi; Maat, Arie; Kool, Marcel; Hoving, Eelco W.; Van den Heuvel-Eibrink, Marry M.; Nicholson, James; Straathof, Karin; Hook, Liz; de Krijger, Ronald R.; Trayers, Claire; Allinson, Kieren; Behjati, Sam; Drost, Jarno
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Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
err2021-03-02
err228
errOAAI
errMuus, Christoph; Luecken, Malte D.; Eraslan, Gokcen; Sikkema, Lisa; Waghray, Avinash; Heimberg, Graham; Kobayashi, Yoshihiko; Vaishnav, Eeshit Dhaval; Subramanian, Ayshwarya; Smillie, Christopher; Jagadeesh, Karthik A.; Duong, Elizabeth Thu; Fiskin, Evgenij; Triglia, Elena Torlai; Ansari, Meshal; Cai, Peiwen; Lin, Brian; Buchanan, Justin; Chen, Sijia; Shu, Jian; Haber, Adam L.; Chung, Hattie; Montoro, Daniel T.; Adams, Taylor; Aliee, Hananeh; Allon, Samuel J.; Andrusivova, Zaneta; Angelidis, Ilias; Ashenberg, Orr; Bassler, Kevin; Becavin, Christophe; Benhar, Inbal; Bergenstrahle, Joseph; Bergenstrahle, Ludvig; Bolt, Liam; Braun, Emelie; Bui, Linh T.; Callori, Steven; Chaffin, Mark; Chichelnitskiy, Evgeny; Chiou, Joshua; Conlon, Thomas M.; Cuoco, Michael S.; Cuomo, Anna S. E.; Deprez, Marie; Duclos, Grant; Fine, Denise; Fischer, David S.; Ghazanfar, Shila; Gillich, Astrid; Giotti, Bruno; Gould, Joshua; Guo, Minzhe; Gutierrez, Austin J.; Habermann, Arun C.; Harvey, Tyler; He, Peng; Hou, Xiaomeng; Hu, Lijuan; Hu, Yan; Jaiswal, Alok; Ji, Lu; Jiang, Peiyong; Kapellos, Theodoros S.; Kuo, Christin S.; Larsson, Ludvig; Leney-Greene, Michael A.; Lim, Kyungtae; Litvinukova, Monika; Ludwig, Leif S.; Lukassen, Soeren; Luo, Wendy; Maatz, Henrike; Madissoon, Elo; Mamanova, Lira; Manakongtreecheep, Kasidet; Leroy, Sylvie; Mayr, Christoph H.; Mbano, Ian M.; McAdams, Alexi M.; Nabhan, Ahmad N.; Nyquist, Sarah K.; Penland, Lolita; Poirion, Olivier B.; Poli, Sergio; Qi, CanCan; Queen, Rachel; Reichart, Daniel; Rosas, Ivan; Schupp, Jonas C.; Shea, Conor, V; Shi, Xingyi; Sinha, Rahul; Sit, Rene, V; Slowikowski, Kamil; Slyper, Michal; Smith, Neal P.; Sountoulidis, Alex; Strunz, Maximilian; Sullivan, Travis B.; Sun, Dawei; Talavera-Lopez, Carlos; Tan, Peng; Tantivit, Jessica; Travaglini, Kyle J.; Tucker, Nathan R.; Vernon, Katherine A.; Wadsworth, Marc H.; Waldman, Julia; Wang, Xiuting; Xu, Ke; Yan, Wenjun; Zhao, William; Ziegler, Carly G. K.
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Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
err2021-02-05
err88
errOAAI
errKildisiute, Gerda; Kholosy, Waleed M.; Young, Matthew D.; Roberts, Kenny; Elmentaite, Rasa; van Hooff, Sander R.; Pacyna, Clarissa N.; Khabirova, Eleonora; Piapi, Alice; Thevanesan, Christine; Bugallo-Blanco, Eva; Burke, Christina; Mamanova, Lira; Keller, Kaylee M.; Langenberg-Ververgaert, Karin P. S.; Lijnzaad, Philip; Margaritis, Thanasis; Holstege, Frank C. P.; Tas, Michelle L.; Wijnen, Marc H. W. A.; van Noesel, Max M.; Del Valle, Ignacio; Barone, Giuseppe; van der Linden, Reinier; Duncan, Catriona; Anderson, John; Achermann, John C.; Haniffa, Muzlifah; Teichmann, Sarah A.; Rampling, Dyanne; Sebire, Neil J.; He, Xiaoling; de Krijger, Ronald R.; Barker, Roger A.; Meyer, Kerstin B.; Bayraktar, Omer; Straathof, Karin; Molenaar, Jan J.; Behjati, Sam
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Single-cell sequencing reveals clonal expansions of pro-inflammatory synovial CD8 T cells expressing tissue-homing receptors in psoriatic arthritis
err2020-09-21
err117
errOAAI
errPenkava, Frank; Velasco-Herrera, Martin Del Castillo; Young, Matthew D.; Yager, Nicole; Nwosu, Lilian N.; Pratt, Arthur G.; Lara, Alicia Lledo; Guzzo, Charlotte; Maroof, Ash; Mamanova, Lira; Cole, Suzanne; Efremova, Mirjana; Simone, Davide; Filer, Andrew; Brown, Chrysothemis C.; Croxford, Andrew L.; Isaacs, John D.; Teichmann, Sarah; Bowness, Paul; Behjati, Sam; Al-Mossawi, M. Hussein
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Understanding cell heterogeneity in the basal layer of human epidermis
err2019-09-01
err0
errOAAI
errBelokhvostova, D.; Philippeos, C.; Mamanova, L.; Smith, C.; Haniffa, M.; Teichmann, S.; Lynch, M.; Watt, F. M.
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BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq
err2018-07-31
err60
errOAAI
errLindeman, Ida; Emerton, Guy; Mamanova, Lira; Snir, Omri; Polanski, Krzysztof; Qiao, Shuo-Wang; Sollid, Ludvig M.; Teichmann, Sarah A.; Stubbington, Michael J. T.
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