arrow
Back
R

Reed A. Cartwright

university of houston system

31H-index
190Paper Count
4.9KCitation Count
Published Papers 26
Publication Date
COATi: Statistical Pairwise Alignment of Protein-Coding Sequences
err2024-06-13
err0
errOAAI
errMesa, Juan Jose Garcia; Zhu, Ziqi; Cartwright, Reed A.
errShare
errSave
Bifidobacteria define gut microbiome profiles of golden lion tamarin (Leontopithecus rosalia) and marmoset (Callithrix sp.) metagenomic shotgun pools
err2023-09-21
err2
errOAAI
errMalukiewicz, Joanna; D'arc, Mirela; Dias, Cecilia A.; Cartwright, Reed A.; Grativol, Adriana D.; Moreira, Silvia Bahadian; Souza, Antonizete R.; Tavares, Maria Clotilde Henriques; Pissinatti, Alcides; Ruiz-Miranda, Carlos R.; Santos, Andre F. A.
errShare
errSave
Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
err2023-06-21
err17
errOAAI
errLauterbur, M. Elise; Cavassim, Maria Izabel A.; Gladstein, Ariella L.; Gower, Graham; Pope, Nathaniel S.; Tsambos, Georgia; Adrion, Jeffrey; Belsare, Saurabh; Biddanda, Arjun; Caudill, Victoria; Cury, Jean; Echevarria, Ignacio; Haller, Benjamin C.; Hasan, Ahmed R.; Huang, Xin; Iasi, Leonardo Nicola Martin; Noskova, Ekaterina; Obsteter, Jana; Pavinato, Vitor Antonio Correa; Pearson, Alice; Peede, David; Perez, Manolo F.; Rodrigues, Murillo F.; Smith, Chris C. R.; Spence, Jeffrey P.; Teterina, Anastasia; Tittes, Silas; Unneberg, Per; Vazquez, Juan Manuel; Waples, Ryan K.; Wohns, Anthony Wilder; Wong, Yan; Baumdicker, Franz; Cartwright, Reed A.; Gorjanc, Gregor; Gutenkunst, Ryan N.; Kelleher, Jerome; Kern, Andrew D.; Ragsdale, Aaron P.; Ralph, Peter L.; Schrider, Daniel R.; Gronau, Ilan
errShare
errSave
Federated learning and Indigenous genomic data sovereignty
err2022-11-15
err7
errOAAI
errBoscarino, Nima; Cartwright, Reed A.; Fox, Keolu; Tsosie, Krystal S.
errShare
errSave
The gut microbiome of exudivorous marmosets in the wild and captivity
err2022-03-23
err18
errOAAI
errMalukiewicz, Joanna; Cartwright, Reed A.; Dergam, Jorge A.; Igayara, Claudia S.; Kessler, Sharon; Moreira, Silvia B.; Nash, Leanne T.; Nicola, Patricia A.; Pereira, Luiz C. M.; Pissinatti, Alcides; Ruiz-Miranda, Carlos R.; Ozga, Andrew T.; Quirino, Adriana A.; Roos, Christian; Silva, Daniel L.; Stone, Anne C.; Grativol, Adriana D.
errShare
errSave
A Probabilistic Model for Indel Evolution: Differentiating Insertions from Deletions
err2021-09-01
err15
errOAAI
errLoewenthal, Gil; Rapoport, Dana; Avram, Oren; Moshe, Asher; Wygoda, Elya; Itzkovitch, Alon; Israeli, Omer; Azouri, Dana; Cartwright, Reed A.; Mayrose, Itay; Pupko, Tal
errShare
errSave
Genomic skimming and nanopore sequencing uncover cryptic hybridization in one of world's most threatened primates
err2021-08-26
err14
errOAAI
errMalukiewicz, Joanna; Cartwright, Reed A.; Dergam, Jorge A.; Igayara, Claudia S.; Nicola, Patricia A.; Pereira, Luiz M. C.; Ruiz-Miranda, Carlos R.; Stone, Anne C.; Silva, Daniel L.; Rodrigues da Silva, Fernanda de Fatima; Varsani, Arvind; Walter, Lutz; Wilson, Melissa A.; Zinner, Dietmar; Roos, Christian
errShare
errSave
Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
err2021-04-06
err5
errOAAI
errMalukiewicz, Joanna; Cartwright, Reed A.; Curi, Nelson H. A.; Dergam, Jorge A.; Igayara, Claudia S.; Moreira, Silvia B.; Molina, Camila, V; Nicola, Patricia A.; Noll, Angela; Passamani, Marcello; Pereira, Luiz C. M.; Pissinatti, Alcides; Ruiz-Miranda, Carlos R.; Silva, Daniel L.; Stone, Anne C.; Zinner, Dietmar; Roos, Christian
errShare
errSave
A community-maintained standard library of population genetic models
err2020-06-23
err82
errOAAI
errAdrion, Jeffrey R.; Cole, Christopher B.; Dukler, Noah; Galloway, Jared G.; Gladstein, Ariella L.; Gower, Graham; Kyriazis, Christopher C.; Ragsdale, Aaron P.; Tsambos, Georgia; Baumdicker, Franz; Carlson, Jedidiah; Cartwright, Reed A.; Durvasula, Arun; Gronau, Ilan; Kim, Bernard Y.; McKenzie, Patrick; Messer, Philipp W.; Noskova, Ekaterina; Ortega-Del Vecchyo, Diego; Racimo, Fernando; Struck, Travis J.; Gravel, Simon; Gutenkunst, Ryan N.; Lohmueller, Kirk E.; Ralph, Peter L.; Schrider, Daniel R.; Siepel, Adam; Kelleher, Jerome; Kern, Andrew D.
errShare
errSave
A phylogenomic approach reveals a low somatic mutation rate in a long-lived plant
err2020-03-11
err39
errOAAI
errOrr, Adam J.; Padovan, Amanda; Kainer, David; Kulheim, Carsten; Bromham, Lindell; Bustos-Segura, Carlos; Foley, William; Haff, Tonya; Hsieh, Ji-Fan; Morales-Suarez, Alejandro; Cartwright, Reed A.; Lanfear, Robert
errShare
errSave
Parallel experimental evolution reveals a novel repressive control of GalP on xylose fermentation in Escherichia coli
err2019-05-21
err10
PREAI
errKurgan, Gavin; Sievert, Christian; Flores, Andrew; Schneider, Aidan; Billings, Thomas; Panyon, Larry; Morris, Chandler; Taylor, Eric; Kurgari, Logan; Cartwright, Reed; Wang, Xuan
errShare
errSave
Experimental evolution reveals an effective avenue to release catabolite repression via mutations in XylR
err2017-06-27
err75
errOAAI
errSievert, Christian; Nieves, Lizbeth M.; Panyon, Larry A.; Loeffler, Taylor; Morris, Chandler; Cartwright, Reed A.; Wang, Xuan
errShare
errSave
Inferring Rates and Length-Distributions of Indels Using Approximate Bayesian Computation
err2017-05-01
err5
errOAAI
errKarin, Eli Levy; Shkedy, Dafna; Ashkenazy, Haim; Cartwright, Reed A.; Pupko, Tal
errShare
errSave
SpartaABC: a web server to simulate sequences with indel parameters inferred using an approximate Bayesian computation algorithm
err2017-04-29
err5
errOAAI
errAshkenazy, Haim; Karin, Eli Levy; Mertens, Zach; Cartwright, Reed A.; Pupko, Tal
errShare
errSave
Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophila
err2016-09-15
err41
errOAAI
errLong, Hongan; Winter, David J.; Chang, Allan Y. -C.; Sung, Way; Wu, Steven H.; Balboa, Mariel; Azevedo, Ricardo B. R.; Cartwright, Reed A.; Lynch, Michael; Zufall, Rebecca A.
errShare
errSave
Whole Genome Sequencing of Field Isolates Reveals Extensive Genetic Diversity in Plasmodium vivax from Colombia
err2015-12-28
err50
errOAAI
errWinter, David J.; Pacheco, M. Andreina; Vallejo, Andres F.; Schwartz, Rachel S.; Arevalo-Herrera, Myriam; Herrera, Socrates; Cartwright, Reed A.; Escalante, Ananias A.
errShare
errSave
Inferring Indel Parameters using a Simulation-based Approach
err2015-11-03
err5
errOAAI
errKarin, Eli Levy; Rabin, Avigayel; Ashkenazy, Haim; Shkedy, Dafna; Avram, Oren; Cartwright, Reed A.; Pupko, Tal
errShare
errSave
DeNovoGear: de novo indel and point mutation discovery and phasing
err2013-08-25
err137
errOAAI
errRamu, Avinash; Noordam, Michiel J.; Schwartz, Rachel S.; Wuster, Arthur; Hurles, Matthew E.; Cartwright, Reed A.; Conrad, Donald F.
errShare
errSave
Comparative population genomics of maize domestication and improvement
err2012-06-03
err733
errOAAI
errHufford, Matthew B.; Xu, Xun; van Heerwaarden, Joost; Pyhaejaervi, Tanja; Chia, Jer-Ming; Cartwright, Reed A.; Elshire, Robert J.; Glaubitz, Jeffrey C.; Guill, Kate E.; Kaeppler, Shawn M.; Lai, Jinsheng; Morrell, Peter L.; Shannon, Laura M.; Song, Chi; Springer, Nathan M.; Swanson-Wagner, Ruth A.; Tiffin, Peter; Wang, Jun; Zhang, Gengyun; Doebley, John; McMullen, Michael D.; Ware, Doreen; Buckler, Edward S.; Yang, Shuang; Ross-Ibarra, Jeffrey
errShare
errSave
History Can Matter: Non-Markovian Behavior of Ancestral Lineages
err2011-03-11
err11
errOAAI
errCartwright, Reed A.; Lartillot, Nicolas; Thorne, Jeffrey L.
errShare
errSave