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Yujia Wen

university of chicago

12H-index
74Paper Count
940Citation Count
Published Papers 15
Publication Date
QuTILs: open-source image-based infiltrating immune cell detection for research application
err2026-08-12
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errOAAI
errMark Vater; Roberto Salgado; Elijah Blige; Heather Lefebvre; Ava Strahan; Margaret Gatti-Mays; Hope S. Rugo; Karla Ballman; Mark Watson; Yujia Wen; Roberto Leon-Ferre; Khalid Niazi; W. Fraser Symmans; Lisa A. Carey; Khalid AbdulJabbar; Zaibo Li; Daniel G. Stover
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Performance of multiple multi-cancer detection tests using a large independent reference set (Alliance A212102)
err2026-03-01
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PREAI
errWood, Marie E.; Pinsky, Paul F.; Novotny, Paul J.; Leevan, Elyse; Weiss, Matthias; Edelman, Dan C.; Watson, Mark; Patriotis, Christos; Merker, Jason D.; Prorok, Philip C.; Wen, Yujia; Rubinstein, Wendy S.; Dragnev, Konstantin; Skarlupka, Amanda L.; Katki, Hormuzd A.; Chow, Selina; Kemeny, Margaret; Gautam, Umang; Reddy, Aswanth; Burak, William; Piantadosi, Steven; Minasian, Lori M.
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Radiomic signatures to estimate survival in patients with advanced hepatocellular carcinoma treated with sorafenib: Cancer and Leukemia Group B 80802 (Alliance)
err2025-12-02
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errOAAI
errL. Dercle; S. Geyer; A.B. Nixon; F. Innocenti; Q. Shi; S.B. Jacobson; L. Luk; A. Liu; H. Yang; Y. Wen; B. Zhao; T. Eche; F.-Z. Mokrane; M. Yang; J. Meyerhardt; E.M. O’Reilly; A.P. Venook; A.B. El-Khoueiry; L.H. Schwartz; G.K. Abou-Alfa
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Proteogenomic analysis of the CALGB 40601 (Alliance) HER2+ breast cancer neoadjuvant trial reveals resistance biomarkers
err2025-06-05
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errOAAI
errEric J. Jaehnig; Aranzazu Fernandez-Martinez; Tanmayi D. Vashist; Matthew V. Holt; LaTerrica Williams; Jonathan T. Lei; Chang In Moon; Beom-Jun Kim; Yongchao Dou; Haoquan Zhao; Viktoriya Korchina; Richard A. Gibbs; Donna Marie Muzny; Harshavardhan Doddapaneni; Charles M. Perou; Lisa A. Carey; Ana I. Robles; Terry Hyslop; Yujia Wen; Linda McCart; Azra Krek; Francesca Petralia; George Miles; Shyam M. Kavuri; Michael A. Gillette; D.R. Mani; Steven A. Carr; Bing Zhang; Matthew J. Ellis; Shankha Satpathy; Meenakshi Anurag
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Gene signatures derived from transcriptomic-causal networks stratify colorectal cancer patients for effective targeted therapy
err2025-01-08
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errOAAI
errYazdani, Akram; Lenz, Heinz-Josef; Pillonetto, Gianluigi; Mendez-Giraldez, Raul; Yazdani, Azam; Sanoff, Hanna; Hadi, Reza; Samiei, Esmat; Venook, Alan P.; Ratain, Mark J.; Rashid, Naim; Vincent, Benjamin G.; Qu, Xueping; Wen, Yujia; Kosorok, Michael; Symmans, William F.; Shen, John Paul Y. C.; Lee, Michael S.; Kopetz, Scott; Nixon, Andrew B.; Bertagnolli, Monica M.; Perou, Charles M.; Innocenti, Federico
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Association between tumor-infiltrating lymphocytes and survival in patients with metastatic breast cancer receiving first-line chemotherapy: analysis of CALGB 40502
err2024-08-21
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errStover, Daniel G.; Salgado, Roberto; Savenkov, Oleksander; Ballman, Karla; Mayer, Erica L.; Magbanua, Mark Jesus M.; Loi, Sherene; Vater, Mark; Glover, Kristyn; Watson, Mark; Wen, Yujia; Symmans, W. Fraser; Perou, Charles; Carey, Lisa A.; Partridge, Ann H.; Rugo, Hope S.
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Proteogenomic profiling of fresh frozen core biopsies from CALGB 40601
err2023-03-01
err0
PREAI
errJaehnig, Eric J.; Fernandez-Martinez, Aranzazu; Vashist, Tanmayi; Holt, Matthew V.; Williams, LaTerrica; Lei, Jonathan; Kim, Beom-Jun; Dou, Yongchao; Korchina, Viktoriya; Gibbs, Richard; Muzny, Donna; Doddapaneni, Harshavardhan; Rodriguez, Henry; Robles, Ana; Hiltke, Tara; Mani, D. R.; Gillette, Michael; Hyslop, Terry; Wen, Yujia; McCart, Linda; Miles, George; Carr, Steven; Zhang, Bing; Satpathy, Shankha; Ellis, Matthew; Anurag, Meenakshi
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Challenges and Gaps in Clinical Trial Genomic Data Management
err2022-05-01
err1
errOAAI
errAsad, Sarah; Kananen, Kathryn; Mueller, Kurt R.; Symmans, W. Fraser; Wen, Yujia; Perou, Charles M.; Blachly, James S.; Chen, James; Vincent, Benjamin G.; Stover, Daniel G.
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Gene and MicroRNA Perturbations of Cellular Response to Pemetrexed Implicate Biological Networks and Enable Imputation of Response in Lung Adenocarcinoma
err2018-01-15
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errOAAI
errGamazon, Eric R.; Trendowski, Matthew R.; Wen, Yujia; Wing, Claudia; Delaney, Shannon M.; Huh, Won; Wong, Shan; Cox, Nancy J.; Dolan, M. Eileen
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Population differences in microRNA expression and biological implications
err2014-10-27
err144
errOAAI
errHuang, R. Stephanie; Gamazon, Eric R.; Ziliak, Dana; Wen, Yujia; Im, Hae Kyung; Zhang, Wei; Wing, Claudia; Duan, Shiwei; Bleibel, Wasim K.; Cox, Nancy J.; Dolan, M. Eileen
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Sorafenib Dose Escalation Is Not Uniformly Associated With Blood Pressure Elevations in Normotensive Patients With Advanced Malignancies
err2014-03-17
err13
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errKarovic, S.; Wen, Y.; Karrison, T. G.; Bakris, G. L.; Levine, M. R.; House, L. K.; Wu, K.; Thomeas, V.; Rudek, M. A.; Wright, J. J.; Cohen, E. E. W.; Fleming, G. F.; Ratain, M. J.; Maitland, M. L.
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International Transporter Consortium Commentary on Clinically Important Transporter Polymorphisms
err2013-07-01
err147
PREAI
errGiacomini, K. M.; Balimane, P. V.; Cho, S. K.; Eadon, M.; Edeki, T.; Hillgren, K. M.; Huang, S-M; Sugiyama, Y.; Weitz, D.; Wen, Y.; Xia, C. Q.; Yee, S. W.; Zimdahl, H.; Niemi, M.
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MicroRNA-30c inhibits human breast tumour chemotherapy resistance by regulating TWF1 and IL-11
err2013-01-22
err239
errOAAI
errBockhorn, Jessica; Dalton, Rachel; Nwachukwu, Chika; Huang, Simo; Prat, Aleix; Yee, Kathy; Chang, Ya-Fang; Huo, Dezheng; Wen, Yujia; Swanson, Kaitlin E.; Qiu, Tyler; Lu, Jun; Park, Seo Young; Dolan, M. Eileen; Perou, Charles M.; Olopade, Olufunmilayo I.; Clarke, Michael F.; Greene, Geoffrey L.; Liu, Huiping
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Genetic Variation That Predicts Platinum Sensitivity Reveals the Role of miR-193b* in Chemotherapeutic Susceptibility
err2012-09-06
err37
errOAAI
errZiliak, Dana; Gamazon, Eric R.; LaCroix, Bonnie; Im, Hae Kyung; Wen, Yujia; Huang, Rong Stephanie
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An eQTL-based method identifies CTTN and ZMAT3 as pemetrexed susceptibility markers
err2011-12-13
err20
errOAAI
errWen, Yujia; Gamazon, Eric R.; Bleibel, Wasim K.; Wing, Claudia; Mi, Shuangli; McIlwee, Bridget E.; Delaney, Shannon M.; Duan, Shiwei; Im, Hae Kyung; Dolan, M. Eileen
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