Daniel W. Chan - Publications, H-index & Citations

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Daniel W. Chan

The University of Texas MD Anderson Cancer Center

63H-index

279Paper Count

1.6WCitation Count

Published Papers 89

Publication Date

Integrated Proteogenomic Characterization of Human High-Grade Serous Ovarian Cancer

Cell

IF42.5

2025-11-04

PREAI

Hui Zhang; Tao Liu; Zhen Zhang; Samuel H. Payne; Bai Zhang; Jason E. McDermott; Jian-Ying Zhou; Vladislav A. Petyuk; Li Chen; Debjit Ray; Shisheng Sun; Feng Yang; Lijun Chen; Jing Wang; Punit Shah; Seong Won Cha; Paul Aiyetan; Sunghee Woo; Yuan Tian; Marina A. Gritsenko; Therese R. Clauss; Caitlin Choi; Matthew E. Monroe; Stefani Thomas; Song Nie; Chaochao Wu; Ronald J. Moore; Kun-Hsing Yu; David L. Tabb; David Fenyö; Vineet Bafna; Yue Wang; Henry Rodriguez; Emily S. Boja; Tara Hiltke; Robert C. Rivers; Lori Sokoll; Heng Zhu; Ie-Ming Shih; Leslie Cope; Akhilesh Pandey; Bing Zhang; Michael P. Snyder; Douglas A. Levine; Richard D. Smith; Daniel W. Chan; Karin D. Rodland

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π-HuB: the proteomic navigator of the human body (Vol 636, pg 322, 2024)

NATURE

IF48.5

2024-12-23

PREAI

He, Fuchu; Aebersold, Ruedi; Baker, Mark S.; Bian, Xiuwu; Bo, Xiaochen; Chan, Daniel W.; Chang, Cheng; Chen, Luonan; Chen, Xiangmei; Chen, Yu-Ju; Cheng, Heping; Collins, Ben C.; Corrales, Fernando; Cox, Juergen; E, Weinan; Van Eyk, Jennifer E.; Fan, Jia; Faridi, Pouya; Figeys, Daniel; Gao, George Fu; Gao, Wen; Gao, Zu-Hua; Goda, Keisuke; Goh, Wilson Wen Bin; Gu, Dongfeng; Guo, Changjiang; Guo, Tiannan; He, Yuezhong; Heck, Albert J. R.; Hermjakob, Henning; Hunter, Tony; Iyer, Narayanan Gopalakrishna; Jiang, Ying; Jimenez, Connie R.; Joshi, Lokesh; Kelleher, Neil L.; Li, Ming; Li, Yang; Lin, Qingsong; Liu, Cui Hua; Liu, Fan; Liu, Guang-Hui; Liu, Yansheng; Liu, Zhihua; Low, Teck Yew; Lu, Ben; Mann, Matthias; Meng, Anming; Moritz, Robert L.; Nice, Edouard; Ning, Guang; Omenn, Gilbert S.; Overall, Christopher M.; Palmisano, Giuseppe; Peng, Yaojin; Pineau, Charles; Poon, Terence Chuen Wai; Purcell, Anthony W.; Qiao, Jie; Reddel, Roger R.; Robinson, Phillip J.; Roncada, Paola; Sander, Chris; Sha, Jiahao; Song, Erwei; Srivastava, Sanjeeva; Sun, Aihua; Sze, Siu Kwan; Tang, Chao; Tang, Liujun; Tian, Ruijun; Vizcaino, Juan Antonio; Wang, Chanjuan; Wang, Chen; Wang, Xiaowen; Wang, Xinxing; Wang, Yan; Weiss, Tobias; Wilhelm, Mathias; Winkler, Robert; Wollscheid, Bernd; Wong, Limsoon; Xie, Linhai; Xie, Wei; Xu, Tao; Xu, Tianhao; Yan, Liying; Yang, Jing; Yang, Xiao; Yates, John; Yun, Tao; Zhai, Qiwei; Zhang, Bing; Zhang, Hui; Zhang, Lihua; Zhang, Lingqiang; Zhang, Pingwen; Zhang, Yukui; Zheng, Yu Zi; Zhong, Qing; IT-HuB Consortium, Daniel W.

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Detection of Pancreatic Ductal Adenocarcinoma-Associated Proteins in Serum

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2024-01-01

OAAI

Lih, T. Mamie; Cao, Liwei; Minoo, Parham; Omenn, Gilbert S.; Hruban, Ralph H.; Chan, Daniel W.; Bathe, Oliver F.; Zhang, Hui

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Epigenetic and transcriptomic characterization reveals progression markers and essential pathways in clear cell renal cell carcinoma (vol 14, 1681, 2023)

NATURE COMMUNICATIONS

IF15.7

2023-05-17

OAAI

Wu, Yige; Terekhanova, Nadezhda V.; Caravan, Wagma; Al Deen, Nataly Naser; Lal, Preet; Chen, Siqi; Mo, Chia-Kuei; Cao, Song; Li, Yize; Karpova, Alla; Liu, Ruiyang; Zhao, Yanyan; Shinkle, Andrew; Strunilin, Ilya; Weimholt, Cody; Sato, Kazuhito; Yao, Lijun; Serasanambati, Mamatha; Yang, Xiaolu; Wyczalkowski, Matthew; Zhu, Houxiang; Zhou, Daniel Cui; Jayasinghe, Reyka G.; Mendez, Daniel; Wendl, Michael C.; Clark, David; Newton, Chelsea; Ruan, Yijun; Reimers, Melissa A.; Pachynski, Russell K.; Kinsinger, Chris; Jewell, Scott; Chan, Daniel W.; Zhang, Hui; Chaudhuri, Aadel A.; Chheda, Milan G.; Humphreys, Benjamin D.; Mesri, Mehdi; Rodriguez, Henry; Hsieh, James J.; Ding, Li; Chen, Feng

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Comprehensive proteogenomic characterization of rare kidney tumors

CANCER RESEARCH

IF16.6

2023-04-04

PREAI

Li, Ginny Xiaohe; Hsiao, Yi; Chen, Lijun; Mannan, Rahul; Zhang, Yuping; Petralia, Francesca; Cho, Hanbyul; Hosseini, Noshad; Calinawan, Anna; Li, Yize; Anand, Shankara; Dagar, Aniket; Geffen, Yifat; Leprevost, Felipe V.; Le, Anne; Ponce, Sean; Schnaubelt, Michael; Al Deen, Nataly Naser; Caravan, Wagma; Houston, Andrew; Kumar-Sinha, Chandan; Wang, Xiaoming; Chugh, Seema; Omenn, Gilbert S.; Chan, Daniel W.; Ricketts, Christopher; Mehra, Rohit; Chinnaiyan, Arul; Ding, Li; Cieslik, Marcin; Zhang, Hui; Dhanasekaran, Saravana M.; Nesvizhskii, Alexey I.

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Impact of Prostate Health Index Results for Prediction of Biopsy Grade Reclassification During Active Surveillance

JOURNAL OF UROLOGY

IF6.8

2022-11-01

OAAI

Filson, Christopher P.; Zhu, Kehao; Huang, Yijian; Zheng, Yingye; Newcomb, Lisa F.; Williams, Sierra; Brooks, James D.; Carroll, Peter R.; Dash, Atreya; Ellis, William J.; Gleave, Martin E.; Liss, Michael A.; Martin, Frances; McKenney, Jesse K.; Morgan, Todd M.; Wagner, Andrew A.; Sokoll, Lori J.; Sanda, Martin G.; Chan, Daniel W.; Lin, Daniel W.

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Prospective comparison of restriction spectrum imaging and non-invasive biomarkers to predict upgrading on active surveillance prostate biopsy

PROSTATE CANCER AND PROSTATIC DISEASES

IF5.8

2022-09-12

PREAI

Eng, Stefan E.; Basasie, Benjamin; Lam, Alfonso; Semmes, O. John; Troyer, Dean A.; Clarke, Geoffrey D.; Sunnapwar, Abhijit G.; Leach, Robin J.; Johnson-Pais, Teresa L.; Sokoll, Lori J.; Chan, Daniel W.; Tosoian, Jeffrey J.; Siddiqui, Javed; Chinnaiyan, Arul M.; Thompson, Ian M.; Boutros, Paul C.; Liss, Michael A.

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Validation of Serum Biomarkers That Complement CA19-9 in Detecting Early Pancreatic Cancer Using Electrochemiluminescent-Based Multiplex Immunoassays

BIOMEDICINES

IF3.9

2021-12-14

OAAI

Song, Jin; Sokoll, Lori J.; Chan, Daniel W.; Zhang, Zhen

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Proteomic signatures of 16 major types of human cancer reveal universal and cancer-type-specific proteins for the identification of potential therapeutic targets

JOURNAL OF HEMATOLOGY & ONCOLOGY

IF40.4

2020-12-07

OAAI

Zhou, Yangying; Lih, T. Mamie; Pan, Jianbo; Hoeti, Naseruddin; Dong, Mingming; Cao, Liwei; Hu, Yingwei; Cho, Kyung-Cho; Chen, Shao-Yung; Eguez, Rodrigo Vargas; Gabrielson, Edward; Chan, Daniel W.; Zhang, Hui; Li, Qing Kay

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Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma

CELL REPORTS

IF6.9

2020-10-01

OAAI

Hu, Yingwei; Pan, Jianbo; Shah, Punit; Ao, Minghui; Thomas, Stefani N.; Liu, Yang; Chen, Lijun; Schnaubelt, Michael; Clark, David J.; Rodriguez, Henry; Boja, Emily S.; Hiltke, Tara; Kinsinger, Christopher R.; Rodland, Karin D.; Li, Qing Kay; Qian, Jiang; Zhang, Zhen; Chan, Daniel W.; Zhang, Hui

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Proteomic Analysis of the Air-Way Fluid in Lung Cancer. Detection of Periostin in Bronchoalveolar Lavage (BAL)

FRONTIERS IN ONCOLOGY

IF3.3

2020-07-03

OAAI

Zhou, Yangying; Yang, Weiming; Ao, Minghui; Hoti, Naseruddin; Gabrielson, Edward; Chan, Daniel W.; Zhang, Hui; Li, Qing Kay

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Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability

CELL REPORTS MEDICINE

IF10.6

2020-04-01

OAAI

McDermott, Jason E.; Arshad, Osama A.; Petyuk, Vladislav A.; Fu, Yi; Gritsenko, Marina A.; Clauss, Therese R.; Moore, Ronald J.; Schepmoes, Athena A.; Zhao, Rui; Monroe, Matthew E.; Schnaubelt, Michael; Tsai, Chia-Feng; Payne, Samuel H.; Huang, Chen; Wang, Liang-Bo; Foltz, Steven; Wyczalkowski, Matthew; Wu, Yige; Song, Ehwang; Brewer, Molly A.; Thiagarajan, Mathangi; Kinsinger, Christopher R.; Robles, Ana, I; Boja, Emily S.; Rodriguez, Henry; Chan, Daniel W.; Zhang, Bing; Zhang, Zhen; Ding, Li; Smith, Richard D.; Liu, Tao; Rodland, Karin D.

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An Integrated Workflow for Global, Glyco-, and Phospho-proteomic Analysis of Tumor Tissues

ANALYTICAL CHEMISTRY

IF6.7

2019-12-20

OAAI

Zhou, Yangying; Lih, Tung-Shing Mamie; Yang, Ganglong; Chen, Shao-Yung; Chen, Lijun; Chan, Daniel W.; Zhang, Hui; Li, Qing Kay

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Challenges and opportunities in the proteomic characterization of clear cell renal cell carcinoma (ccRCC): A critical step towards the personalized care of renal cancers

SEMINARS IN CANCER BIOLOGY

IF15.7

2019-04-01

OAAI

Li, Qing Kay; Pavlovich, Christian P.; Zhang, Hui; Kinsinger, Christopher R.; Chan, Daniel W.

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Predicted glycosyltransferases promote development and prevent spurious cell clumping in the choanoflagellate S-rosetta

ELIFE

IF0

2018-12-17

OAAI

Wetzel, Laura A.; Levin, Tera C.; Hulett, Ryan E.; Chan, Daniel; King, Grant A.; Aldayafleh, Reef; Booth, David S.; Sigg, Monika Abedin; King, Nicole

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Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2017-01-01

119

OAAI

Wang, Jing; Ma, Zihao; Carr, Steven A.; Mertins, Philipp; Zhang, Hui; Zhang, Zhen; Chan, Daniel W.; Ellis, Matthew J. C.; Townsend, R. Reid; Smith, Richard D.; McDermott, Jason E.; Chen, Xian; Paulovich, Amanda G.; Boja, Emily S.; Mesri, Mehdi; Kinsinger, Christopher R.; Rodriguez, Henry; Rodland, Karin D.; Liebler, Daniel C.; Zhang, Bing

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Prostate Health Index improves multivariable risk prediction of aggressive prostate cancer

BJU INTERNATIONAL

IF4.4

2016-11-22

OAAI

Loeb, Stacy; Shin, Sanghyuk S.; Broyles, Dennis L.; Wei, John T.; Sanda, Martin; Klee, George; Partin, Alan W.; Sokoll, Lori; Chan, Daniel W.; Bangma, Chris H.; van Schaik, Ron H. N.; Slawin, Kevin M.; Marks, Leonard S.; Catalona, William J.

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An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2016-03-01

106

OAAI

Ruggles, Kelly V.; Tang, Zuojian; Wang, Xuya; Grover, Himanshu; Askenazi, Manor; Teubl, Jennifer; Cao, Song; McLellan, Michael D.; Clauser, Karl R.; Tabb, David L.; Mertins, Philipp; Slebos, Robbert; Erdmann-Gilmore, Petra; Li, Shunqiang; Gunawardena, Harsha P.; Xie, Ling; Liu, Tao; Zhou, Jian-Ying; Sun, Shisheng; Hoadley, Katherine A.; Perou, Charles M.; Chen, Xian; Davies, Sherri R.; Maher, Christopher A.; Kinsinger, Christopher R.; Rodland, Karen D.; Zhang, Hui; Zhang, Zhen; Ding, Li; Townsend, R. Reid; Rodriguez, Henry; Chan, Daniel; Smith, Richard D.; Liebler, Daniel C.; Carr, Steven A.; Payne, Samuel; Ellis, Matthew J.; Fenyo, David

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Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

CLINICAL CHEMISTRY

IF6.3

2016-01-01

193

OAAI

Hoofnagle, Andrew N.; Whiteaker, Jeffrey R.; Carr, Steven A.; Kuhn, Eric; Liu, Tao; Massoni, Sam A.; Thomas, Stefani N.; Townsend, R. Reid; Zimmerman, Lisa J.; Boja, Emily; Chen, Jing; Crimmins, Daniel L.; Davies, Sherri R.; Gao, Yugian; Hiltke, Tara R.; Ketchum, Karen A.; Kinsinger, Christopher R.; Mesri, Mehdi; Meyer, Matthew R.; Qian, Wei-Jun; Schoenherr, Regine M.; Scott, Mitchell G.; Shi, Tujin; Whiteley, Gordon R.; Wrobel, John A.; Wu, Chaochao; Ackermann, Brad L.; Aebersold, Ruedi; Barnidge, David R.; Bunk, David M.; Clarke, Nigel; Fishman, Jordan B.; Grant, Russ P.; Kusebauch, Ulrike; Kushnir, Mark M.; Lowenthal, Mark S.; Moritz, Robert L.; Neubert, Hendrik; Patterson, Scott D.; Rockwood, Alan L.; Rogers, John; Singh, Ravinder J.; Van Eyk, Jennifer E.; Wong, Steven H.; Zhang, Shucha; Chan, Daniel W.; Chen, Xian; Ellis, Matthew J.; Liebler, Daniel C.; Rodland, Karin D.; Rodriguez, Henry; Smith, Richard D.; Zhang, Zhen; Zhang, Hui; Paulovich, Amanda G.

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Reproducibility of Differential Proteomic Technologies in CPTAC Fractionated Xenografts

JOURNAL OF PROTEOME RESEARCH

IF3.6

2015-12-22

OAAI

Tabb, David L.; Wang, Xia; Carr, Steven A.; Clauser, Karl R.; Mertins, Philipp; Chambers, Matthew C.; Holman, Jerry D.; Wang, Jing; Zhang, Bing; Zimmerman, Lisa J.; Chen, Xian; Gunawardena, Harsha P.; Davies, Sherri R.; Ellis, Matthew J. C.; Li, Shunqiang; Townsend, R. Reid; Boja, Emilsy S.; Ketchum, Karen A.; Kinsinger, Christopher R.; Mesri, Mehdi; Rodriguez, Henry; Liu, Tao; Kim, Sangtae; McDermott, Jason E.; Payne, Samuel H.; Petyuk, Vladislav A.; Rodland, Karin D.; Smith, Richard D.; Yang, Feng; Chan, Daniel W.; Zhang, Bai; Zhang, Hui; Zhang, Zhen; Zhou, Jian-Ying; Liebler, Daniel C.

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Research Directions