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Cytoscape Web: bringing network biology to the browser Ono, Keiichiro; Fong, Dylan; Gao, Chengzhan; Churas, Christopher; Pillich, Rudolf; Lenkiewicz, Joanna; Pratt, Dexter; Pico, Alexander R.; Hanspers, Kristina; Xin, Yihang; Morris, John; Kucera, Mike; Franz, Max; Lopes, Christian; Bader, Gary; Ideker, Trey Share Save
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A global multiscale map of protein assemblies from integration of protein interactions and images Schaffer, Leah V.; Hu, Mengzhou; Huttlin, Edward L.; Qian, Gege; Pal, Abantika; Soni, Neelesh; Latham, Andrew; Vaites, Laura Pontano; Trang Le; Qin, Yue; Churas, Christopher; Pratt, Dexter; Echeverria, Ignacia; Sali, Andrej; Harper, J. Wade; Gygi, Steven P.; Lundberg, Emma; Ideker, Trey Share Save
A map of osteosarcoma cell architecture reveals convergence of pediatric cancer mutations on protein assemblies Hu, Mengzhou; Schaffer, Leah V.; Huttlin, Edward L.; Qian, Gege; Latham, Andrew; Pal, Abantika; Vaites, Laura Pontano; Le, Trang; Qin, Yue; Churas, Christopher; Pratt, Dexter; Bachelder, Robin; Zage, Peter; Echeverria, Ignacia; Sali, Andrej; Harper, J. Wade; Gygi, Steven P.; Lundberg, Emma; Ideker, Trey Share Save
A multi-scale map of protein assemblies in the DNA damage response Kratz, Anton; Kim, Minkyu; Kelly, Marcus R.; Zheng, Fan; Koczor, Christopher A.; Li, Jianfeng; Ono, Keiichiro; Qin, Yue; Churas, Christopher; Chen, Jing; Pillich, Rudolf T.; Park, Jisoo; Modak, Maya; Collier, Rachel; Licon, Kate; Pratt, Dexter; Sobol, Robert W.; Krogan, Nevan J.; Ideker, Trey Share Save
Mapping the common gene networks that underlie related diseases Rosenthal, Sara Brin; Wright, Sarah N.; Liu, Sophie; Churas, Christopher; Chilin-Fuentes, Daisy; Chen, Chi-Hua; Fisch, Kathleen M.; Pratt, Dexter; Kreisberg, Jason F.; Ideker, Trey Share Save
Functional landscape of SARS-CoV-2 cellular restriction Martin-Sancho, Laura; Lewinski, Mary K.; Pache, Lars; Stoneham, Charlotte A.; Yin, Xin; Becker, Mark E.; Pratt, Dexter; Churas, Christopher; Rosenthal, Sara B.; Liu, Sophie; Weston, Stuart; De Jesus, Paul D.; O'Neill, Alan M.; Gounder, Anshu P.; Nguyen, Courtney; Pu, Yuan; Curry, Heather M.; Oom, Aaron L.; Miorin, Lisa; Rodriguez-Frandsen, Ariel; Zheng, Fan; Wu, Chunxiang; Xiong, Yong; Urbanowski, Matthew; Shaw, Megan L.; Chang, Max W.; Benner, Christopher; Hope, Thomas J.; Frieman, Matthew B.; Garcia-Sastre, Adolfo; Ideker, Trey; Hultquist, Judd F.; Guatelli, John; Chanda, Sumit K. Share Save
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CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation Haberl, Matthias G.; Churas, Christopher; Tindall, Lucas; Boassa, Daniela; Phan, Sebastien; Bushong, Eric A.; Madany, Matthew; Akay, Raffi; Deerinck, Thomas J.; Peltier, Steven T.; Ellisman, Mark H. Share Save
Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods Wan, Xiaohua; Katchalski, Tsvi; Churas, Christopher; Ghosh, Sreya; Phan, Sebastien; Lawrence, Albert; Hao, Yu; Zhou, Ziying; Chen, Ruijuan; Chen, Yu; Zhang, Fa; Ellisman, Mark H. Share Save
High-resolution human genome structure by single-molecule analysis Teague, Brian; Waterman, Michael S.; Goldstein, Steven; Potamousis, Konstantinos; Zhou, Shiguo; Reslewic, Susan; Sarkar, Deepayan; Valouev, Anton; Churas, Christopher; Kidd, Jeffrey M.; Kohn, Scott; Runnheim, Rodney; Lamers, Casey; Forrest, Dan; Newton, Michael A.; Eichler, Evan E.; Kent-First, Marijo; Surti, Urvashi; Livny, Miron; Schwartz, David C. Share Save
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