Not logged in Massively parallel nanowell-based single-cell gene expression profiling Goldstein, Leonard D.; Chen, Ying-Jiun Jasmine; Dunne, Jude; Mir, Alain; Hubschle, Hermann; Guillory, Joseph; Yuan, Wenlin; Zhang, Jingli; Stinson, Jeremy; Jaiswal, Bijay; Pahuja, Kanika Bajaj; Mann, Ishminder; Schaal, Thomas; Chan, Leo; Anandakrishnan, Sangeetha; Lin, Chun-wah; Espinoza, Patricio; Husain, Syed; Shapiro, Harris; Swaminathan, Karthikeyan; Wei, Sherry; Srinivasan, Maithreyan; Seshagiri, Somasekar; Modrusan, Zora Share Save
Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control Arango Isaza, Rafael E.; Diaz-Trujillo, Caucasella; Dhillon, Braham; Aerts, Andrea; Carlier, Jean; Crane, Charles F.; de Jong, Tristan V.; de Vries, Ineke; Dietrich, Robert; Farmer, Andrew D.; Fereira, Claudia Fortes; Garcia, Suzana; Guzman, Mauricio; Hamelin, Richard C.; Lindquist, Erika A.; Mehrabi, Rahim; Quiros, Olman; Schmutz, Jeremy; Shapiro, Harris; Reynolds, Elizabeth; Scalliet, Gabriel; Souza, Manoel, Jr.; Stergiopoulos, Ioannis; Van der Lee, Theo A. J.; De Wit, Pierre J. G. M.; Zapater, Marie-Francoise; Zwiers, Lute-Harm; Grigoriev, Igor V.; Goodwin, Stephen B.; Kema, Gert H. J. Share Save
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis Tisserant, Emilie; Malbreil, Mathilde; Kuo, Alan; Kohler, Annegret; Symeonidi, Aikaterini; Balestrini, Raffaella; Charron, Philippe; Duensing, Nina; Frey, Nicolas Frei Dit; Gianinazzi-Pearson, Vivienne; Gilbert, Luz B.; Handa, Yoshihiro; Herr, Joshua R.; Hijri, Mohamed; Koul, Raman; Kawaguchi, Masayoshi; Krajinski, Franziska; Lammers, Peter J.; Masclauxm, Frederic G.; Murat, Claude; Morin, Emmanuelle; Ndikumana, Steve; Pagni, Marco; Petitpierre, Denis; Requena, Natalia; Rosikiewicz, Pawel; Riley, Rohan; Saito, Katsuharu; Clemente, Helene San; Shapiro, Harris; Van Tuinen, Diederik; Becard, Guillaume; Bonfante, Paola; Paszkowski, Uta; Shachar-Hill, Yair Y.; Tuskan, Gerald A.; Young, Peter W.; Sanders, Ian R.; Henrissat, Bernard; Rensing, Stefan A.; Grigoriev, Igor V.; Corradi, Nicolas; Roux, Christophe; Martin, Francis Share Save
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis Goodwin, Stephen B.; Ben M'Barek, Sarrah; Dhillon, Braham; Wittenberg, Alexander H. J.; Crane, Charles F.; Hane, James K.; Foster, Andrew J.; Van der Lee, Theo A. J.; Grimwood, Jane; Aerts, Andrea; Antoniw, John; Bailey, Andy; Bluhm, Burt; Bowler, Judith; Bristow, Jim; van der Burgt, Ate; Canto-Canche, Blondy; Churchill, Alice C. L.; Conde-Ferraez, Laura; Cools, Hans J.; Coutinho, Pedro M.; Csukai, Michael; Dehal, Paramvir; De Wit, Pierre; Donzelli, Bruno; van de Geest, Henri C.; van Ham, Roeland C. H. J.; Hammond-Kosack, Kim E.; Henrissat, Bernard; Kilian, Andrzej; Kobayashi, Adilson K.; Koopmann, Edda; Kourmpetis, Yiannis; Kuzniar, Arnold; Lindquist, Erika; Lombard, Vincent; Maliepaard, Chris; Martins, Natalia; Mehrabi, Rahim; Nap, Jan P. H.; Ponomarenko, Alisa; Rudd, Jason J.; Salamov, Asaf; Schmutz, Jeremy; Schouten, Henk J.; Shapiro, Harris; Stergiopoulos, Ioannis; Torriani, Stefano F. F.; Tu, Hank; de Vries, Ronald P.; Waalwijk, Cees; Ware, Sarah B.; Wiebenga, Ad; Zwiers, Lute-Harm; Oliver, Richard P.; Grigoriev, Igor V.; Kema, Gert H. J. Share Save
Obligate biotrophy features unraveled by the genomic analysis of rust fungi Duplessis, Sebastien; Cuomo, Christina A.; Lin, Yao-Cheng; Aerts, Andrea; Tisserant, Emilie; Veneault-Fourrey, Claire; Joly, David L.; Hacquard, Stephane; Amselem, Joelle; Cantarel, Brandi L.; Chiu, Readman; Coutinho, Pedro M.; Feau, Nicolas; Field, Matthew; Frey, Pascal; Gelhaye, Eric; Goldberg, Jonathan; Grabherr, Manfred G.; Kodira, Chinnappa D.; Kohler, Annegret; Kuees, Ursula; Lindquist, Erika A.; Lucas, Susan M.; Mago, Rohit; Mauceli, Evan; Morin, Emmanuelle; Murat, Claude; Pangilinan, Jasmyn L.; Park, Robert; Pearson, Matthew; Quesneville, Hadi; Rouhier, Nicolas; Sakthikumar, Sharadha; Salamov, Asaf A.; Schmutz, Jeremy; Selles, Benjamin; Shapiro, Harris; Tanguay, Philippe; Tuskan, Gerald A.; Henrissat, Bernard; Van de Peer, Yves; Rouze, Pierre; Ellis, Jeffrey G.; Dodds, Peter N.; Schein, Jacqueline E.; Zhong, Shaobin; Hamelin, Richard C.; Grigoriev, Igor V.; Szabo, Les J.; Martin, Francis Share Save
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma Kubicek, Christian P.; Herrera-Estrella, Alfredo; Seidl-Seiboth, Verena; Martinez, Diego A.; Druzhinina, Irina S.; Thon, Michael; Zeilinger, Susanne; Casas-Flores, Sergio; Horwitz, Benjamin A.; Mukherjee, Prasun K.; Mukherjee, Mala; Kredics, Laszlo; Alcaraz, Luis D.; Aerts, Andrea; Antal, Zsuzsanna; Atanasova, Lea; Cervantes-Badillo, Mayte G.; Challacombe, Jean; Chertkov, Olga; McCluskey, Kevin; Coulpier, Fanny; Deshpande, Nandan; von Doehren, Hans; Ebbole, Daniel J.; Esquivel-Naranjo, Edgardo U.; Fekete, Erzsebet; Flipphi, Michel; Glaser, Fabian; Gomez-Rodriguez, Elida Y.; Gruber, Sabine; Han, Cliff; Henrissat, Bernard; Hermosa, Rosa; Hernandez-Onate, Miguel; Karaffa, Levente; Kosti, Idit; Le Crom, Stephane; Lindquist, Erika; Lucas, Susan; Luebeck, Mette; Luebeck, Peter S.; Margeot, Antoine; Metz, Benjamin; Misra, Monica; Nevalainen, Helena; Omann, Markus; Packer, Nicolle; Perrone, Giancarlo; Uresti-Rivera, Edith E.; Salamov, Asaf; Schmoll, Monika; Seiboth, Bernhard; Shapiro, Harris; Sukno, Serenella; Tamayo-Ramos, Juan Antonio; Tisch, Doris; Wiest, Aric; Wilkinson, Heather H.; Zhang, Michael; Coutinho, Pedro M.; Kenerley, Charles M.; Monte, Enrique; Baker, Scott E.; Grigoriev, Igor V. Share Save
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum Sucgang, Richard; Kuo, Alan; Tian, Xiangjun; Salerno, William; Parikh, Anup; Feasley, Christa L.; Dalin, Eileen; Tu, Hank; Huang, Eryong; Barry, Kerrie; Lindquist, Erika; Shapiro, Harris; Bruce, David; Schmutz, Jeremy; Salamov, Asaf; Fey, Petra; Gaudet, Pascale; Anjard, Christophe; Babu, M. Madan; Basu, Siddhartha; Bushmanova, Yulia; van der Wel, Hanke; Katoh-Kurasawa, Mariko; Dinh, Christopher; Coutinho, Pedro M.; Saito, Tamao; Elias, Marek; Schaap, Pauline; Kay, Robert R.; Henrissat, Bernard; Eichinger, Ludwig; Rivero, Francisco; Putnam, Nicholas H.; West, Christopher M.; Loomis, William F.; Chisholm, Rex L.; Shaulsky, Gad; Strassmann, Joan E.; Queller, David C.; Kuspa, Adam; Grigoriev, Igor V. Share Save
The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion Coleman, Jeffrey J.; Rounsley, Steve D.; Rodriguez-Carres, Marianela; Kuo, Alan; Wasmann, Catherine C.; Grimwood, Jane; Schmutz, Jeremy; Taga, Masatoki; White, Gerard J.; Zhou, Shiguo; Schwartz, David C.; Freitag, Michael; Ma, Li-jun; Danchin, Etienne G. J.; Henrissat, Bernard; Coutinho, Pedro M.; Nelson, David R.; Straney, Dave; Napoli, Carolyn A.; Barker, Bridget M.; Gribskov, Michael; Rep, Martijn; Kroken, Scott; Molnar, Istvan; Rensing, Christopher; Kennell, John C.; Zamora, Jorge; Farman, Mark L.; Selker, Eric U.; Salamov, Asaf; Shapiro, Harris; Pangilinan, Jasmyn; Lindquist, Erika; Lamers, Casey; Grigoriev, Igor V.; Geiser, David M.; Covert, Sarah F.; Temporini, Esteban; VanEtten, Hans D. Share Save
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion Martinez, Diego; Challacombe, Jean; Morgenstern, Ingo; Hibbett, David; Schmoll, Monika; Kubicek, Christian P.; Ferreira, Patricia; Ruiz-Duenas, Francisco J.; Martinez, Angel T.; Kersten, Phil; Hammel, Kenneth E.; Wymelenberg, Amber Vanden; Gaskell, Jill; Lindquist, Erika; Sabat, Grzegorz; BonDurant, Sandra Splinter; Larrondo, Luis F.; Canessa, Paulo; Vicuna, Rafael; Yadav, Jagjit; Doddapaneni, Harshavardhan; Subramanian, Venkataramanan; Pisabarro, Antonio G.; Lavin, Jose L.; Oguiza, Jose A.; Master, Emma; Henrissat, Bernard; Coutinho, Pedro M.; Harris, Paul; Magnuson, Jon Karl; Baker, Scott E.; Bruno, Kenneth; Kenealy, William; Hoegger, Patrik J.; Kuees, Ursula; Ramaiya, Preethi; Lucash, Susan; Salamov, Asaf; Shapiro, Harris; Tu, Hank; Chee, Christine L.; Misra, Monica; Xie, Gary; Teter, Sarah; Yaver, Debbie; James, Tim; Mokrejs, Martin; Pospisek, Martin; Grigoriev, Igor V.; Brettin, Thomas; Rokhsar, Dan; Berka, Randy; Cullen, Dan Share Save
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis Martin, F.; Aerts, A.; Ahren, D.; Brun, A.; Danchin, E. G. J.; Duchaussoy, F.; Gibon, J.; Kohler, A.; Lindquist, E.; Pereda, V.; Salamov, A.; Shapiro, H. J.; Wuyts, J.; Blaudez, D.; Buee, M.; Brokstein, P.; Canback, B.; Cohen, D.; Courty, P. E.; Coutinho, P. M.; Delaruelle, C.; Detter, J. C.; Deveau, A.; DiFazio, S.; Duplessis, S.; Fraissinet-Tachet, L.; Lucic, E.; Frey-Klett, P.; Fourrey, C.; Feussner, I.; Gay, G.; Grimwood, J.; Hoegger, P. J.; Jain, P.; Kilaru, S.; Labbe, J.; Lin, Y. C.; Legue, V.; Le Tacon, F.; Marmeisse, R.; Melayah, D.; Montanini, B.; Muratet, M.; Nehls, U.; Niculita-Hirzel, H.; Oudot-Le Secq, M. P.; Peter, M.; Quesneville, H.; Rajashekar, B.; Reich, M.; Rouhier, N.; Schmutz, J.; Yin, T.; Chalot, M.; Henrissat, B.; Kuees, U.; Lucas, S.; Van de Peer, Y.; Podila, G. K.; Polle, A.; Pukkila, P. J.; Richardson, P. M.; Rouze, P.; Sanders, I. R.; Stajich, J. E.; Tunlid, A.; Tuskan, G.; Grigoriev, I. V. Share Save
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods Mavromatis, Konstantinos; Ivanova, Natalia; Barry, Kerrie; Shapiro, Harris; Goltsman, Eugene; McHardy, Alice C.; Rigoutsos, Isidore; Salamov, Asaf; Korzeniewski, Frank; Land, Miriam; Lapidus, Alla; Grigoriev, Igor; Richardson, Paul; Hugenholtz, Philip; Kyrpides, Nikos C. Share Save
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis Jeffries, Thomas W.; Grigoriev, Igor V.; Grimwood, Jane; Laplaza, Jose M.; Aerts, Andrea; Salamov, Asaf; Schmutz, Jeremy; Lindquist, Erika; Dehal, Paramvir; Shapiro, Harris; Jin, Yong-Su; Passoth, Volkmar; Richardson, Paul M. Share Save
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities Martin, Hector Garcia; Ivanova, Natalia; Kunin, Victor; Warnecke, Falk; Barry, Kerrie W.; McHardy, Alice C.; Yeates, Christine; He, Shaomei; Salamov, Asaf A.; Szeto, Ernest; Dalin, Eileen; Putnam, Nik H.; Shapiro, Harris J.; Pangilinan, Jasmyn L.; Rigoutsos, Isidore; Kyrpides, Nikos C.; Blackall, Linda Louise; McMahon, Katherine D.; Hugenholtz, Philip Share Save
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